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Conserved domains on  [gi|13445835|gb|AAK26397|]
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cytochrome b, partial (mitochondrion) [Macaca brunnescens]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 552.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00100 245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 552.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00100 245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-286 2.63e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.44  E-value: 2.63e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   5 PIMKMInRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGAS 84
Cdd:COG1290  19 PLASLV-REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  85 VLFICLFLHMGRGLYYGSY-----LLletWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQW 159
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835 160 IWGGYAIGSPTLTRFFTLH-FILPFIIVALTTVQLLFLHETGSNNPCGISSDS----DKIAFHPYYTVKDILGLVLLLFV 234
Cdd:COG1290 175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGV 254

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....
gi 13445835 235 LAMLTLFSPNllNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVP--NKLGG 286
Cdd:COG1290 255 FALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 3.33e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.85  E-value: 3.33e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   5 PIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGAS 84
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  85 VLFICLFLHMGRGLYYGSY--LLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWG 162
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 13445835 163 GYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSN 202
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 3.63e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.07  E-value: 3.63e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    14 LIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLFICLFLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    94 MGRGLYYG--SYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIGSPTL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 13445835   172 TRFFTLHFILPFIIVALTTVQLLFLHETG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-286 4.01e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 45.94  E-value: 4.01e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 13445835   254 PADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLG 97
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 552.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00100 245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
CYTB MTH00119
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 514.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00119 166 WGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLAL 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00119 246 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 291
CYTB MTH00156
cytochrome b; Provisional
 7-286 3.46e-177

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 492.37  E-value: 3.46e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    7 MKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVL 86
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   87 FICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAI 166
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  167 GSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTLFSPNLL 246
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 13445835  247 NDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 280
CYTB MTH00191
cytochrome b; Provisional
 1-286 2.09e-176

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 490.97  E-value: 2.09e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGG 287
CYTB MTH00131
cytochrome b; Provisional
 1-286 6.71e-175

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 487.62  E-value: 6.71e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00131 245 FSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 290
CYTB MTH00145
cytochrome b; Provisional
 1-286 4.83e-171

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 477.86  E-value: 4.83e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00145   6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00145  86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00145 246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGG 291
CYTB MTH00074
cytochrome b; Provisional
 1-286 8.23e-170

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 474.94  E-value: 8.23e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00074   6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00074  86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00074 166 WGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSL 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00074 246 FSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGG 291
CYTB MTH00016
cytochrome b; Validated
 1-286 3.62e-165

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 462.99  E-value: 3.62e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00016 246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGG 291
CYTB MTH00034
cytochrome b; Validated
 1-286 4.07e-163

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 458.02  E-value: 4.07e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGG 290
CYTB MTH00022
cytochrome b; Validated
 1-286 8.45e-143

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 406.39  E-value: 8.45e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGG 289
CYTB MTH00224
cytochrome b; Provisional
 1-286 7.69e-142

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 403.92  E-value: 7.69e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00224 246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGG 291
CYTB MTH00053
cytochrome b; Provisional
 1-286 1.21e-138

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 396.00  E-value: 1.21e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    1 RKSNPIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHA 80
Cdd:MTH00053   6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   81 NGASVLFICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWI 160
Cdd:MTH00053  86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  161 WGGYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:MTH00053 166 WGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVF 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 13445835  241 FSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00053 246 LFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGG 291
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-286 2.63e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.44  E-value: 2.63e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   5 PIMKMInRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGAS 84
Cdd:COG1290  19 PLASLV-REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  85 VLFICLFLHMGRGLYYGSY-----LLletWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQW 159
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTW 174

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835 160 IWGGYAIGSPTLTRFFTLH-FILPFIIVALTTVQLLFLHETGSNNPCGISSDS----DKIAFHPYYTVKDILGLVLLLFV 234
Cdd:COG1290 175 LFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGV 254

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....
gi 13445835 235 LAMLTLFSPNllNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVP--NKLGG 286
Cdd:COG1290 255 FALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306
CYTB MTH00033
cytochrome b; Provisional
 14-286 1.10e-108

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 319.96  E-value: 1.10e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   14 LIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLFICLFLH 93
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   94 MGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIGSPTLTR 173
Cdd:MTH00033  95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  174 FFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTLFS--PNLLNDPNN 251
Cdd:MTH00033 175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPEN 254

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 13445835  252 YIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00033 255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 289
CYTB MTH00086
cytochrome b; Provisional
 8-286 3.83e-105

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 309.95  E-value: 3.83e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    8 KMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLF 87
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   88 ICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIG 167
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  168 SPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDIlGLVLLLFVLAMLTLFSPNLLN 247
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA-YNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 13445835  248 DPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLG 278
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 3.33e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.85  E-value: 3.33e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   5 PIMKMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGAS 84
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  85 VLFICLFLHMGRGLYYGSY--LLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWG 162
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 13445835 163 GYAIGSPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSN 202
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 8-286 5.61e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 263.77  E-value: 5.61e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    8 KMINRSLIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLF 87
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   88 ICLFLHMGRGLYYGSYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIG 167
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  168 SPTLTRFFTLHFILPFIIVALTTVQLLFLHETGSNNPCGISSD-SDKIAFHPYYTVKDILGLVLLLFVLAMLTLFSPNLL 246
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 13445835  247 NDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 3.63e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.07  E-value: 3.63e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    14 LIDLPTPPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLFICLFLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    94 MGRGLYYG--SYLLLETWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIGSPTL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 13445835   172 TRFFTLHFILPFIIVALTTVQLLFLHETG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-249 1.69e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 143.54  E-value: 1.69e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835    84 SVLFICLFLHMGRGLYYGSYLLLE--TWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIW 161
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   162 GGYAIGSPTLTRFFTLHF-ILPFIIVALTTVQLLFLHETGSNNPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTL 240
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 13445835   241 FSPNLLNDP 249
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 29-204 4.92e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.38  E-value: 4.92e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   29 FGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLFICLFLHMGRGLYYGSYLLLE- 107
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  108 -TWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIGSPTLTRFFTLH-FILPFII 185
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 13445835  186 VALTTVQLLFLHETGSNNP 204
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 20-204 3.28e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 123.29  E-value: 3.28e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835   20 PPNLSMWWNFGSLLAACLILQIITGLFLAMHYSPDTSSAFSSIAHITRDVNYGWTTRYLHANGASVLFICLFLHMGRGLY 99
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835  100 YGSYLLLE--TWNIGIMLLLMTMTTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNIVQWIWGGYAIGSPTLTRFFTL 177
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 13445835  178 H-FILPFIIVALTTVQLLFLHETGSNNP 204
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 203-286 1.46e-27

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 103.88  E-value: 1.46e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13445835 203 NPCGISSDSDKIAFHPYYTVKDILGLVLLLFVLAMLTLFSPNLLNDPNNYIPADPLNTPPHIKPEWYFLFAYTILRSVPN 282
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                ....
gi 13445835 283 KLGG 286
Cdd:cd00290  81 KLLG 84
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
254-286 7.92e-16

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 71.36  E-value: 7.92e-16
                          10        20        30
                  ....*....|....*....|....*....|...
gi 13445835   254 PADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGG 33
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 254-286 9.91e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 50.56  E-value: 9.91e-08
                        10        20        30
                ....*....|....*....|....*....|...
gi 13445835 254 PADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:COG5679  66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLG 98
petD CHL00058
cytochrome b6/f complex subunit IV
 254-286 1.10e-06

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 47.69  E-value: 1.10e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 13445835  254 PADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLG 97
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-286 4.01e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 45.94  E-value: 4.01e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 13445835   254 PADPLNTPPHIKPEWYFLFAYTILRSVPNKLGG 286
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLG 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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