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Conserved domains on  [gi|1371371831|gb|PSQ93736|]
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hypothetical protein BRD52_00200 [Bacteroidetes bacterium SW_4_67_19]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YraI super family cl28549
Uncharacterized conserved protein YraI [Function unknown];
249-325 2.11e-05

Uncharacterized conserved protein YraI [Function unknown];


The actual alignment was detected with superfamily member COG4991:

Pssm-ID: 444015 [Multi-domain]  Cd Length: 92  Bit Score: 42.36  E-value: 2.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371371831 249 LLVAGLGVWLAAPSPDGRAVALR-DPLTLRAGPAARADSAAAVPEGTVLRLTGRADGSDWARVrSSRGDAGWARTDAL 325
Cdd:COG4991     5 LLAAALALLLLAPAAAAAATAVAtDDLNLRSGPGTGYPVVGTLPAGATVTVLGCTSGGGWCKV-SYGGQRGWVSARYL 81
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 111-181 4.57e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.57e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371831 111 YAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPaESQRLQHNLSVVRSQ 181
Cdd:COG5010    65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP-DNPNAYSNLAALLLS 134
 
Name Accession Description Interval E-value
YraI COG4991
Uncharacterized conserved protein YraI [Function unknown];
249-325 2.11e-05

Uncharacterized conserved protein YraI [Function unknown];


Pssm-ID: 444015 [Multi-domain]  Cd Length: 92  Bit Score: 42.36  E-value: 2.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371371831 249 LLVAGLGVWLAAPSPDGRAVALR-DPLTLRAGPAARADSAAAVPEGTVLRLTGRADGSDWARVrSSRGDAGWARTDAL 325
Cdd:COG4991     5 LLAAALALLLLAPAAAAAATAVAtDDLNLRSGPGTGYPVVGTLPAGATVTVLGCTSGGGWCKV-SYGGQRGWVSARYL 81
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 111-181 4.57e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.57e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371831 111 YAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPaESQRLQHNLSVVRSQ 181
Cdd:COG5010    65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP-DNPNAYSNLAALLLS 134
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 112-178 3.49e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 37.73  E-value: 3.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371831 112 AEGDYAGALRQYDTVL---ESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQRLQhNLSVV 178
Cdd:PRK02603   47 ADGEYAEALENYEEALkleEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN-NIAVI 115
SH3_3 pfam08239
Bacterial SH3 domain;
272-325 6.30e-03

Bacterial SH3 domain;


Pssm-ID: 462405 [Multi-domain]  Cd Length: 54  Bit Score: 34.53  E-value: 6.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1371371831 272 DPLTLRAGPAARADSAAAVPEGTVLRLTGRaDGSDWARVRSSRGDAGWARTDAL 325
Cdd:pfam08239   1 SGLNVRSGPSTSSEVVGTLPKGEKVEVLEE-QGGGWYKVRTYDGYEGWVSSSYL 53
TPR_1 pfam00515
Tetratricopeptide repeat;
137-165 7.25e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.55  E-value: 7.25e-03
                          10        20
                  ....*....|....*....|....*....
gi 1371371831 137 YYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
 
Name Accession Description Interval E-value
YraI COG4991
Uncharacterized conserved protein YraI [Function unknown];
249-325 2.11e-05

Uncharacterized conserved protein YraI [Function unknown];


Pssm-ID: 444015 [Multi-domain]  Cd Length: 92  Bit Score: 42.36  E-value: 2.11e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371371831 249 LLVAGLGVWLAAPSPDGRAVALR-DPLTLRAGPAARADSAAAVPEGTVLRLTGRADGSDWARVrSSRGDAGWARTDAL 325
Cdd:COG4991     5 LLAAALALLLLAPAAAAAATAVAtDDLNLRSGPGTGYPVVGTLPAGATVTVLGCTSGGGWCKV-SYGGQRGWVSARYL 81
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 111-181 4.57e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.57e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371831 111 YAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPaESQRLQHNLSVVRSQ 181
Cdd:COG5010    65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP-DNPNAYSNLAALLLS 134
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 104-165 9.49e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 9.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371371831 104 FETGNRRYAEGDYAGALRQYDTVLE----SKWASGALYYnVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG1729    34 YWLGEAYYALGDYDEAAEAFEKLLKrypdSPKAPDALLK-LGLSYLELGDYDKARATLEELIKKYP 98
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
107-165 1.06e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.06e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
107-165 1.21e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 1.21e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 95-165 1.59e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.44  E-value: 1.59e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371831  95 AQPTGVRSAFETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG3914   107 LNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 104-169 2.58e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 2.58e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371371831 104 FETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQ 169
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE 73
YgiM COG3103
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family ...
 266-325 4.98e-04

Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family [General function prediction only];


Pssm-ID: 442337 [Multi-domain]  Cd Length: 119  Bit Score: 39.34  E-value: 4.98e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371831 266 RAVALRDPLTLRAGPAARADSAAAVPEGTVLRLTGRADGsdWARVRSSRGDAGWARTDAL 325
Cdd:COG3103     6 RYVVDADALNVRSGPGTSYRIVGTLPKGEKVTVLGRSGG--WYKVRYSNGKTGWVSSRYL 63
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 111-167 5.82e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 5.82e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1371371831 111 YAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAE 167
Cdd:COG4783    83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 95-171 5.92e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 5.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371371831  95 AQPTGVRSAFETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQRL 171
Cdd:COG2956   173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 107-184 1.02e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.02e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQRLQhnlsvVRSQIEA 184
Cdd:COG4235    58 AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL-----LEASIAE 130
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
107-182 1.53e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 1.53e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPaESQRLQHNLSVVRSQI 182
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP-DDAEALNNLGLALQAL 89
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 107-178 1.57e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 1.57e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQrLQHNLSVV 178
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE-AYLNLGEA 155
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
107-171 1.90e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 1.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQRL 171
Cdd:COG4785   114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERA 178
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 111-160 2.28e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 2.28e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1371371831 111 YAEGDYAGALRQYDTVLE----SKWASGALYYnVGGAHFRRGNMGQAVRYYEKA 160
Cdd:COG1729     4 LKAGDYDEAIAAFKAFLKrypnSPLAPDALYW-LGEAYYALGDYDEAAEAFEKL 56
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
92-165 2.76e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 2.76e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1371371831  92 PTVAQPTGVRSAFETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDP 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 112-165 3.04e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 3.04e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1371371831 112 AEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG2956   122 QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDP 175
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 112-178 3.49e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 37.73  E-value: 3.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371831 112 AEGDYAGALRQYDTVL---ESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQRLQhNLSVV 178
Cdd:PRK02603   47 ADGEYAEALENYEEALkleEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN-NIAVI 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 104-175 5.92e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.79  E-value: 5.92e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371371831 104 FETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPaESQRLQHNL 175
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP-DRAEALLEL 82
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 107-165 6.08e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 36.86  E-value: 6.08e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG5010    95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
SH3_3 pfam08239
Bacterial SH3 domain;
272-325 6.30e-03

Bacterial SH3 domain;


Pssm-ID: 462405 [Multi-domain]  Cd Length: 54  Bit Score: 34.53  E-value: 6.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1371371831 272 DPLTLRAGPAARADSAAAVPEGTVLRLTGRaDGSDWARVRSSRGDAGWARTDAL 325
Cdd:pfam08239   1 SGLNVRSGPSTSSEVVGTLPKGEKVEVLEE-QGGGWYKVRTYDGYEGWVSSSYL 53
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
107-166 7.18e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.53  E-value: 7.18e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371831 107 GNRRYAEGDYAGALrQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPA 166
Cdd:COG3063    33 GLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_1 pfam00515
Tetratricopeptide repeat;
137-165 7.25e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.55  E-value: 7.25e-03
                          10        20
                  ....*....|....*....|....*....
gi 1371371831 137 YYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 96-166 7.54e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.40  E-value: 7.54e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371831  96 QPTGVRSAFETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPA 166
Cdd:COG2956   140 GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
107-172 7.61e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.29  E-value: 7.61e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371371831 107 GNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLPAESQRLQ 172
Cdd:COG0457   117 GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 95-165 7.86e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.14  E-value: 7.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371831  95 AQPTGVRSAFETGNRRYAEGDYAGALRQYDTVLESKWASGALYYNVGGAHFRRGNMGQAVRYYEKARRLLP 165
Cdd:COG4235    12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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