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Conserved domains on  [gi|1371371875|gb|PSQ93774|]
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hypothetical protein BRD52_00050 [Bacteroidetes bacterium SW_4_67_19]

Protein Classification

molecular chaperone DnaJ( domain architecture ID 1000952)

molecular chaperone DnaJ, part of the DnaK-DnaJ-GrpE system, prevents the aggregation of unfolded substrate and acts primarily by stimulating the ATPase activity of Hsp70

CATH:  2.10.230.10
Gene Ontology:  GO:0051082|GO:0005524|GO:0009408|GO:0006457
PubMed:  8016869|15063739|29290615

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 5-88 2.34e-42

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 144.52  E-value: 2.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPF--AGRGPGA 82
Cdd:PRK10767    4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFeqGGGGGGF 83


                  ....*.
gi 1371371875  83 GGQNPF 88
Cdd:PRK10767   84 GGGGGF 89
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 5-88 2.34e-42

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 144.52  E-value: 2.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPF--AGRGPGA 82
Cdd:PRK10767    4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFeqGGGGGGF 83


                  ....*.
gi 1371371875  83 GGQNPF 88
Cdd:PRK10767   84 GGGGGF 89
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 6-123 2.97e-40

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 138.89  E-value: 2.97e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPdDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPF-AGRGPGAGG 84
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFnGGGGGGGGG 79

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1371371875  85 QNPFGGQNPFGGGGGrtrvrFEQRGGRGGDPAAGRRRAA 123
Cdd:TIGR02349  80 FNGFDIGFFGDFGDI-----FGDFFGGGGGSGRRRRSGP 113
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 6-68 2.11e-37

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 122.97  E-value: 2.11e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYD 68
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
1-80 8.06e-35

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 126.09  E-value: 8.06e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGP 80
Cdd:NF037946    1 MEEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPD-AAEIFAEINEAYEVLSNPEKRANYDKYGHDGVDGEGG 79
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 6-76 3.08e-31

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 109.79  E-value: 3.08e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFA 76
Cdd:COG0484     1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAEL 71
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 6-60 3.22e-29

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 101.85  E-value: 3.22e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGD 60
Cdd:cd06257     1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
5-63 3.25e-29

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 101.93  E-value: 3.25e-29
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875    5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDD-EAEDRFKEVQEAYDVLGDEEK 63
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKeEAEEKFKEINEAYEVLSDPEK 60
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 5-88 2.34e-42

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 144.52  E-value: 2.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPF--AGRGPGA 82
Cdd:PRK10767    4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFeqGGGGGGF 83


                  ....*.
gi 1371371875  83 GGQNPF 88
Cdd:PRK10767   84 GGGGGF 89
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 6-123 2.97e-40

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 138.89  E-value: 2.97e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPdDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPF-AGRGPGAGG 84
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFnGGGGGGGGG 79

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1371371875  85 QNPFGGQNPFGGGGGrtrvrFEQRGGRGGDPAAGRRRAA 123
Cdd:TIGR02349  80 FNGFDIGFFGDFGDI-----FGDFFGGGGGSGRRRRSGP 113
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 6-68 2.11e-37

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 122.97  E-value: 2.11e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYD 68
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
1-80 8.06e-35

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 126.09  E-value: 8.06e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGP 80
Cdd:NF037946    1 MEEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPD-AAEIFAEINEAYEVLSNPEKRANYDKYGHDGVDGEGG 79
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 1-84 1.21e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 116.82  E-value: 1.21e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGP 80
Cdd:PRK14277    1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGF 80


                  ....
gi 1371371875  81 GAGG 84
Cdd:PRK14277   81 GQGG 84
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 6-76 3.08e-31

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 109.79  E-value: 3.08e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFA 76
Cdd:COG0484     1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAEL 71
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 1-86 3.88e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 115.57  E-value: 3.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQTkDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDR----GGRNPFA 76
Cdd:PRK14276    1 MNNT-EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-AEEKYKEVQEAYETLSDPQKRAAYDQygaaGANGGFG 78

                          90
                  ....*....|
gi 1371371875  77 GRGPGAGGQN 86
Cdd:PRK14276   79 GGAGGFGGFD 88
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 5-86 4.10e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 115.22  E-value: 4.10e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGAGG 84
Cdd:PRK14301    4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGF 83


                  ..
gi 1371371875  85 QN 86
Cdd:PRK14301   84 SS 85
PRK14297 PRK14297
molecular chaperone DnaJ;
1-84 4.49e-30

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 112.57  E-value: 4.49e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQtKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGp 80
Cdd:PRK14297    1 MAS-KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG- 78


                  ....
gi 1371371875  81 GAGG 84
Cdd:PRK14297   79 GFGS 82
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 5-88 1.32e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 111.44  E-value: 1.32e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRnpfAGRGPGA-- 82
Cdd:PRK14281    3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH---AGVGSSAas 79


                  ....*.
gi 1371371875  83 GGQNPF 88
Cdd:PRK14281   80 GGGPGY 85
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 1-71 2.43e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 110.68  E-value: 2.43e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNpDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGG 71
Cdd:PRK14283    1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 1-71 2.56e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 110.71  E-value: 2.56e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGG 71
Cdd:PRK14298    1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAYAVLSDAEKRAQYDRFG 70
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 6-60 3.22e-29

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 101.85  E-value: 3.22e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGD 60
Cdd:cd06257     1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
5-63 3.25e-29

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 101.93  E-value: 3.25e-29
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875    5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDD-EAEDRFKEVQEAYDVLGDEEK 63
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKeEAEEKFKEINEAYEVLSDPEK 60
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 3-88 4.11e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 109.86  E-value: 4.11e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   3 QTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPdDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGA 82
Cdd:PRK14291    1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQ 79


                  ....*.
gi 1371371875  83 GGQNPF 88
Cdd:PRK14291   80 QGQEGF 85
PRK14289 PRK14289
molecular chaperone DnaJ;
1-84 7.56e-29

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 109.54  E-value: 7.56e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRnpfAGRGP 80
Cdd:PRK14289    1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH---AGVGG 77


                  ....
gi 1371371875  81 GAGG 84
Cdd:PRK14289   78 AAGG 81
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 6-85 8.32e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 109.55  E-value: 8.32e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRN-PFAGRGpGAGG 84
Cdd:PRK14284    2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDgPFAGAG-GFGG 80


                  .
gi 1371371875  85 Q 85
Cdd:PRK14284   81 A 81
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 6-66 1.93e-28

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 100.07  E-value: 1.93e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQ 66
Cdd:COG5407     1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPKAEERFKEINEAYELLSDAEKRAR 61
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 5-86 1.98e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 108.09  E-value: 1.98e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDD-DEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGAG 83
Cdd:PRK14290    3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNkAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82


                  ...
gi 1371371875  84 GQN 86
Cdd:PRK14290   83 WDN 85
PRK14280 PRK14280
molecular chaperone DnaJ;
5-120 3.90e-28

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 107.50  E-value: 3.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGGrnpFAGRGPGAGG 84
Cdd:PRK14280    4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYEVLSDDQKRAQYDQFG---HAGPNQGFGG 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1371371875  85 QNPFGGQNPFGGGGGRTRVRFEQRGGRGGDPAAGRR 120
Cdd:PRK14280   80 GGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQ 115
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 5-84 5.34e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 106.77  E-value: 5.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGAGG 84
Cdd:PRK14294    4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFS 83
PRK14295 PRK14295
molecular chaperone DnaJ;
5-88 1.71e-27

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 105.70  E-value: 1.71e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYD-------RGGRNPfaG 77
Cdd:PRK14295    9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDearslfgNGGFRP--G 86

                          90
                  ....*....|.
gi 1371371875  78 RGPGAGGQNPF 88
Cdd:PRK14295   87 PGGGGGGGFNF 97
PRK14279 PRK14279
molecular chaperone DnaJ;
5-86 2.61e-27

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 105.20  E-value: 2.61e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRgGRNPFAGRGPGAGG 84
Cdd:PRK14279    9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE-TRRLFAGGGFGGRR 87


                  ..
gi 1371371875  85 QN 86
Cdd:PRK14279   88 FD 89
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 5-88 5.73e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 103.92  E-value: 5.73e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGAGG 84
Cdd:PRK14285    3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGF 82


                  ....
gi 1371371875  85 QNPF 88
Cdd:PRK14285   83 SGGF 86
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 5-84 1.53e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 103.21  E-value: 1.53e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPdDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGrNPFAGRGPGAGG 84
Cdd:PRK14278    3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGG-DPLESAGGGGGG 80
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 5-77 4.91e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 101.56  E-value: 4.91e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAG 77
Cdd:PRK14296    4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDG 75
PRK14293 PRK14293
molecular chaperone DnaJ;
6-85 9.23e-26

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 100.83  E-value: 9.23e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGGRnpfAGRGPGAGGQ 85
Cdd:PRK14293    4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-AEDRFKEINRAYEVLSDPETRARYDQFGE---AGVSGAAGFP 79
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 5-71 2.85e-25

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 101.04  E-value: 2.85e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGG 71
Cdd:TIGR03835   2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEANDVLSNPKKRANYDKYG 67
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 2-80 3.99e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 99.10  E-value: 3.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   2 PQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDD-DEAEDRFKEVQEAYDVLGDEEKRKQYDRGGrnpFAGRGP 80
Cdd:PRK14282    1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENrKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG---YVGEQP 77
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
1-87 1.33e-23

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 88.62  E-value: 1.33e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   1 MPQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDE-AEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRG 79
Cdd:COG2214     1 MPDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKAlAEELFQRLNEAYEVLSDPERRAEYDRELGQSGKGSA 80


                  ....*...
gi 1371371875  80 PGAGGQNP 87
Cdd:COG2214    81 SQPSAAAQ 88
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 5-84 5.64e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 93.52  E-value: 5.64e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRnpfAGRGPGAGG 84
Cdd:PRK14286    4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK---AGVNAGAGG 80
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 4-86 2.06e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 92.00  E-value: 2.06e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   4 TKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDrNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGAG 83
Cdd:PRK14300    2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG 80


                  ...
gi 1371371875  84 GQN 86
Cdd:PRK14300   81 GGN 83
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 6-123 8.82e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 89.95  E-value: 8.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   6 DYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPfagrGPGAGGQ 85
Cdd:PRK14292    3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG-AAEKFAQINEAYAVLSDAEKRAHYDRFGTAP----GAGMPGG 77

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1371371875  86 NPFGGQNPFGGGGgrtrvrFEQR-GGRGGDPAAGRRRAA 123
Cdd:PRK14292   78 DPFGGMGFDPMDI------FEQLfGGAGFGGGRGRRGPA 110
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 5-84 2.14e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 88.91  E-value: 2.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYDR-GGRNPFAGRGPGAG 83
Cdd:PRK14287    4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPD-AEDKFKEVKEAYDTLSDPQKKAHYDQfGHTDPNQGFGGGGA 82


                  .
gi 1371371875  84 G 84
Cdd:PRK14287   83 G 83
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 5-128 3.33e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 84.61  E-value: 3.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNpDDDEAEDRFKEVQEAYDVLGDEEKRKQYDR----GGRNPFAGRGP 80
Cdd:PRK14299    4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRRIYDTygttAASAGWQGPPP 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1371371875  81 GAGGQNPFGGQNPFGGGGGRTRVrFEQRGGRGG----DPAAGRR-RAAVDERA 128
Cdd:PRK14299   83 GPPGGGDFSGFNVGDFSDFFQQL-FGGRGGFGGfgdlFGSVGRRaRKGRDLEA 134
PRK10266 PRK10266
curved DNA-binding protein;
5-88 3.68e-20

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 84.87  E-value: 3.68e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1371371875   5 KDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDeAEDRFKEVQEAYDVLGDEEKRKQYD--RGGRN-PFAGRGPG 81
Cdd:PRK10266    4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWEVLSDEQRRAEYDqlWQHRNdPQFNRQFQ 82


                  ....*..
gi 1371371875  82 AGGQNPF 88
Cdd:PRK10266   83 HGDGQSF 89
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 4-82 4.12e-20

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 86.03  E-value: 4.12e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1371371875   4 TKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDddeaEDRFKEVQEAYDVLGDEEKRKQYDRGGRNPFAGRGPGA 82
Cdd:PTZ00037   27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101
PRK14288 PRK14288
molecular chaperone DnaJ;
7-72 6.79e-19

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 82.04  E-value: 6.79e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1371371875   7 YYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNPDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGGR 72
Cdd:PRK14288    5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 1-71 2.13e-13

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 67.12  E-value: 2.13e-13
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371371875    1 MPQTKdYYDVLGVDRDASEKDIKKAYRKLAQKYHPDRNpDDDEAEDRFKEVQEAYDVLGDEEKRKQYDRGG 71
Cdd:PTZ00341   570 IPDTL-FYDILGVGVNADMKEISERYFKLAENYYPPKR-SGNEGFHKFKKINEAYQILGDIDKKKMYNKFG 638
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
3-61 8.21e-13

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 60.20  E-value: 8.21e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371371875   3 QTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDR----NPDDD--EAEDRFKEVQEAYDVLGDE 61
Cdd:COG1076     2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRlaagLPEEEqrLALQKAAAINEAYETLKDP 66
djlA PRK09430
co-chaperone DjlA;
2-58 6.84e-09

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 53.28  E-value: 6.84e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1371371875   2 PQTKDYYDVLGVDRDASEKDIKKAYRKLAQKYHPDR-----NPDD--DEAEDRFKEVQEAYDVL 58
Cdd:PRK09430  197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKlvakgLPPEmmEMAKEKAQEIQAAYELI 260
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 4-68 2.37e-08

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 52.34  E-value: 2.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1371371875   4 TKDYYDVLGVDR---DASEKDIKKAYRKLAQKYHPDR-----NPDDDEAedrFKEVQEAYDVLGDEEKRKQYD 68
Cdd:COG5269    42 KVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKtaaggNKGCDEF---FKLIQKAREVLGDRKLRLQYD 111
PHA03102 PHA03102
Small T antigen; Reviewed
 9-64 3.50e-05

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 41.58  E-value: 3.50e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1371371875   9 DVLGVDRDA--SEKDIKKAYRKLAQKYHPDRNPDddeaEDRFKEVQEAYDVLGDEEKR 64
Cdd:PHA03102    9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKS 62
PHA02624 PHA02624
large T antigen; Provisional
 9-64 4.97e-04

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 39.58  E-value: 4.97e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1371371875   9 DVLGVDRDA--SEKDIKKAYRKLAQKYHPDRNPDddeaEDRFKEVQEAYDVLGDEEKR 64
Cdd:PHA02624   15 DLLGLPMAAwgNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKS 68
hscB PRK01356
co-chaperone HscB; Provisional
 6-67 3.50e-03

co-chaperone HscB; Provisional


Pssm-ID: 167217 [Multi-domain]  Cd Length: 166  Bit Score: 36.39  E-value: 3.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1371371875   6 DYYDVLGVDRDAS--EKDIKKAYRKLAQKYHPDRNPDDDEAEDRF---KEVQEAYDVLGDEEKRKQY 67
Cdd:PRK01356    3 NYFQLLGLPQEYNidLKILEKQYFAMQVKYHPDKAKTLQEKEQNLiiaSELNNAYSTLKDALKRAEY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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