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Conserved domains on  [gi|1377632604|dbj|BBD76024|]
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octamer-binding transcription factor 4 alternative variant [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pou super family cl22952
Pou domain - N-terminal to homeobox domain;
1-38 2.11e-16

Pou domain - N-terminal to homeobox domain;


The actual alignment was detected with superfamily member smart00352:

Pssm-ID: 473999  Cd Length: 75  Bit Score: 65.92  E-value: 2.11e-16
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1377632604   1 MKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFG 38
Cdd:smart00352  2 DDTDPRELEAFAKQFKQRRIKLGFTQADVGLALGALYG 39
 
Name Accession Description Interval E-value
POU smart00352
Found in Pit-Oct-Unc transcription factors;
1-38 2.11e-16

Found in Pit-Oct-Unc transcription factors;


Pssm-ID: 197673  Cd Length: 75  Bit Score: 65.92  E-value: 2.11e-16
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1377632604   1 MKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFG 38
Cdd:smart00352  2 DDTDPRELEAFAKQFKQRRIKLGFTQADVGLALGALYG 39
Pou pfam00157
Pou domain - N-terminal to homeobox domain;
5-52 1.54e-15

Pou domain - N-terminal to homeobox domain;


Pssm-ID: 459692  Cd Length: 72  Bit Score: 63.83  E-value: 1.54e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1377632604  5 QKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGG--SPPACSDLTALNV 52
Cdd:pfam00157  3 LEELEEFAKEFKQRRIKLGYTQADVGSALGALYGPvfSQSTICRFEKLDL 52
 
Name Accession Description Interval E-value
POU smart00352
Found in Pit-Oct-Unc transcription factors;
1-38 2.11e-16

Found in Pit-Oct-Unc transcription factors;


Pssm-ID: 197673  Cd Length: 75  Bit Score: 65.92  E-value: 2.11e-16
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1377632604   1 MKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFG 38
Cdd:smart00352  2 DDTDPRELEAFAKQFKQRRIKLGFTQADVGLALGALYG 39
Pou pfam00157
Pou domain - N-terminal to homeobox domain;
5-52 1.54e-15

Pou domain - N-terminal to homeobox domain;


Pssm-ID: 459692  Cd Length: 72  Bit Score: 63.83  E-value: 1.54e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1377632604  5 QKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGG--SPPACSDLTALNV 52
Cdd:pfam00157  3 LEELEEFAKEFKQRRIKLGYTQADVGSALGALYGPvfSQSTICRFEKLDL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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