NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1379150216|gb|AWB27773|]
View 

hypothetical protein HARCEL1_08645 [Halococcoides cellulosivorans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BglC COG2730
Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism];
66-375 5.97e-34

Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism];


:

Pssm-ID: 442036 [Multi-domain]  Cd Length: 295  Bit Score: 132.48  E-value: 5.97e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  66 GNEVVLRGVNIGDPKRLNVTASARGKTAEQVVRAAtdesdGWHSRFIRIPVQPWdvaelppvpmAWGMDDPPAEFVkvge 145
Cdd:COG2730     2 AMGPRLRGVNLGNWLELWFETLWGNITEEDIDAIA-----DWGFNTVRLPVSWE----------RLQDPDNPYTLD---- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 146 eqgyyepplftadelETYIEtHLKPVVQACIDNDVYCIVDYHRHWGDGElaWAegdeygnpkgpNPGLDEEVRTFWDTVA 225
Cdd:COG2730    63 ---------------EAYLE-RVDEVVDWAKARGLYVILDLHHAPGYQG--WY-----------DAATQERFIAFWRQLA 113

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 226 PHFADVPNVL-FELYNEPTkpgwgpeDVIWNGWRSVAQPWVDIIREHAPRNMILIGNPRWSRMVWGIKYGEFDGDNLGYT 304
Cdd:COG2730   114 ERYKDYPNVLgFELLNEPH-------GATWADWNALAQRAIDAIRATNPDRLIIVEGNNWGGAHNLRALDPLDDDNLVYS 186

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 305 YHAYPGHAVT---------DFDDDTGNAWEQ---------APLFVTEWGYSEgrcKWICGNDQRFGTPFKEWASERPIHW 366
Cdd:COG2730   187 VHFYGPFVFThqgawfagpTYPANLEARLDNwgdwaadngVPVFVGEFGAYN---DDPDASRLAWLRDLLDYLEENGIGW 263


                  ....*....
gi 1379150216 367 TAWCFDPVW 375
Cdd:COG2730   264 TYWSFNPSG 272
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
462-712 9.72e-17

Fibronectin type 3 domain [General function prediction only];


:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 85.05  E-value: 9.72e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 462 TSVAIGWDQPANPGdspFDGYVVYvdgRQRTTLGP-------DTTTYTVEELLSDTRYQISVTGIDVAGNEGRP-ATVTV 533
Cdd:COG3401   247 GSVTLSWDPVTESD---ATGYRVY---RSNSGDGPftkvatvTTTSYTDTGLTNGTTYYYRVTAVDAAGNESAPsNVVSV 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 534 TTDayddSTPPDVPSGLEIVDRTHESITVSWSGVTDTGPSGVHHYTVALDGSVRTRVAAGSTETTLED--LAPETEYEIT 611
Cdd:COG3401   321 TTD----LTPPAAPSGLTATAVGSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAETVTTTSYTDtgLTPGTTYYYK 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 612 VTAVDTAGNESAASAPLAAATEVDRPGADALLLHTFDDRDAWPDGNCQ-GEGWTGQSGLTTEQSDGRIAVSYDGGGWMGS 690
Cdd:COG3401   397 VTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAaSAASNPGVSAAVLADGGDTGNAVPFTTTSST 476

                         250       260
                  ....*....|....*....|..
gi 1379150216 691 KLGTDISGYDYLKLRMAGAAGG 712
Cdd:COG3401   477 VTATTTDTTTANLSVTTGSLVG 498
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 794-883 2.54e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.20  E-value: 2.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 794 PSTPADLAVDGTTDESITVSWTESTDAGGSgVANYALWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAID 873
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGP-ITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGL-KPGTEYEFRVRAVN 78

                          90
                  ....*....|
gi 1379150216 874 GAGnKSAPAT 883
Cdd:cd00063    79 GGG-ESPPSE 87
Dockerin_like super family cl21530
Dockerin repeat domains and domains resembling dockerin repeats; Dockerins are modules in the ...
 920-968 3.98e-05

Dockerin repeat domains and domains resembling dockerin repeats; Dockerins are modules in the cellulosome complex that often anchor catalytic subunits by binding to cohesin domains of scaffolding proteins. Three types of dockerins and their corresponding cohesin have been described in the literature. This alignment models two consecutive dockerin repeats, the functional unit.


The actual alignment was detected with superfamily member cd14254:

Pssm-ID: 277547  Cd Length: 54  Bit Score: 41.81  E-value: 3.98e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1379150216 920 DLSGDGRINFPDVNTLFQNTDSDRAARNSEFYDFTGDGVVDMQDVLALF 968
Cdd:cd14254     2 DVNGDGVVDIADLALVSQHFGKTSDAGYVPAADLNGDGVIDAADLALLA 50
TAT_signal pfam10518
TAT (twin-arginine translocation) pathway signal sequence;
19-44 6.47e-03

TAT (twin-arginine translocation) pathway signal sequence;


:

Pssm-ID: 463131 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 6.47e-03
                          10        20
                  ....*....|....*....|....*.
gi 1379150216  19 TRRDFLKktVGAGVAAAGLTGAVGTA 44
Cdd:pfam10518   3 SRRDFLK--GSAAAAAAAALGGCAAA 26
 
Name Accession Description Interval E-value
BglC COG2730
Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism];
66-375 5.97e-34

Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism];


Pssm-ID: 442036 [Multi-domain]  Cd Length: 295  Bit Score: 132.48  E-value: 5.97e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  66 GNEVVLRGVNIGDPKRLNVTASARGKTAEQVVRAAtdesdGWHSRFIRIPVQPWdvaelppvpmAWGMDDPPAEFVkvge 145
Cdd:COG2730     2 AMGPRLRGVNLGNWLELWFETLWGNITEEDIDAIA-----DWGFNTVRLPVSWE----------RLQDPDNPYTLD---- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 146 eqgyyepplftadelETYIEtHLKPVVQACIDNDVYCIVDYHRHWGDGElaWAegdeygnpkgpNPGLDEEVRTFWDTVA 225
Cdd:COG2730    63 ---------------EAYLE-RVDEVVDWAKARGLYVILDLHHAPGYQG--WY-----------DAATQERFIAFWRQLA 113

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 226 PHFADVPNVL-FELYNEPTkpgwgpeDVIWNGWRSVAQPWVDIIREHAPRNMILIGNPRWSRMVWGIKYGEFDGDNLGYT 304
Cdd:COG2730   114 ERYKDYPNVLgFELLNEPH-------GATWADWNALAQRAIDAIRATNPDRLIIVEGNNWGGAHNLRALDPLDDDNLVYS 186

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 305 YHAYPGHAVT---------DFDDDTGNAWEQ---------APLFVTEWGYSEgrcKWICGNDQRFGTPFKEWASERPIHW 366
Cdd:COG2730   187 VHFYGPFVFThqgawfagpTYPANLEARLDNwgdwaadngVPVFVGEFGAYN---DDPDASRLAWLRDLLDYLEENGIGW 263


                  ....*....
gi 1379150216 367 TAWCFDPVW 375
Cdd:COG2730   264 TYWSFNPSG 272
Cellulase pfam00150
Cellulase (glycosyl hydrolase family 5);
148-373 2.87e-23

Cellulase (glycosyl hydrolase family 5);


Pssm-ID: 395098 [Multi-domain]  Cd Length: 272  Bit Score: 100.53  E-value: 2.87e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 148 GYYEPPLFTADELETYIEThLKPVVQACIDNDVYCIVDYHrhwgdgelawaegDEYGNPKGPNPGLDEEVR---TFWDTV 224
Cdd:pfam00150  48 GGYVPNNPDYLIDENWLNR-VDEVVDYAIDNGMYVIIDWH-------------HDGGWPGDPNGNIDTAKAffkKIWTQI 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 225 APHFADVPNVLFELYNEPTkpgwGPEDVIW-NGWRSVAQPWVDIIREHAPRNMILIGNPRWS--RMVWGIKYGEfDGDNL 301
Cdd:pfam00150 114 ATRYGNNPNVIFELMNEPH----GNDQATWaDDVKDYAQEAIDAIRAAGPNNLIIVGGNSWSqnPDGAALNDPN-DDDNL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 302 GYTYHAYPG----------HAVTDFDDDTGNAWEQA-----PLFVTEWG-------YSEGRCKWIcgndqrfgtpfkEWA 359
Cdd:pfam00150 189 IYSVHFYAPsdfsgtwfdcEDPTNLAQRLRAAANWAldngiPVFIGEFGggnadgpCRDEAEKWL------------DYL 256

                         250
                  ....*....|....
gi 1379150216 360 SERPIHWTAWCFDP 373
Cdd:pfam00150 257 KENGISWTGWSNGN 270
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
462-712 9.72e-17

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 85.05  E-value: 9.72e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 462 TSVAIGWDQPANPGdspFDGYVVYvdgRQRTTLGP-------DTTTYTVEELLSDTRYQISVTGIDVAGNEGRP-ATVTV 533
Cdd:COG3401   247 GSVTLSWDPVTESD---ATGYRVY---RSNSGDGPftkvatvTTTSYTDTGLTNGTTYYYRVTAVDAAGNESAPsNVVSV 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 534 TTDayddSTPPDVPSGLEIVDRTHESITVSWSGVTDTGPSGVHHYTVALDGSVRTRVAAGSTETTLED--LAPETEYEIT 611
Cdd:COG3401   321 TTD----LTPPAAPSGLTATAVGSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAETVTTTSYTDtgLTPGTTYYYK 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 612 VTAVDTAGNESAASAPLAAATEVDRPGADALLLHTFDDRDAWPDGNCQ-GEGWTGQSGLTTEQSDGRIAVSYDGGGWMGS 690
Cdd:COG3401   397 VTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAaSAASNPGVSAAVLADGGDTGNAVPFTTTSST 476

                         250       260
                  ....*....|....*....|..
gi 1379150216 691 KLGTDISGYDYLKLRMAGAAGG 712
Cdd:COG3401   477 VTATTTDTTTANLSVTTGSLVG 498
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 544-619 2.43e-10

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 57.62  E-value: 2.43e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  544 PDVPSGLEIVDRTHESITVSWSGVTDTGPSG-VHHYTVALDGS----VRTRVAAGSTETTLEDLAPETEYEITVTAVDTA 618
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGyIVGYRVEYREEgsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                   .
gi 1379150216  619 G 619
Cdd:smart00060  81 G 81
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 794-883 2.54e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.20  E-value: 2.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 794 PSTPADLAVDGTTDESITVSWTESTDAGGSgVANYALWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAID 873
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGP-ITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGL-KPGTEYEFRVRAVN 78

                          90
                  ....*....|
gi 1379150216 874 GAGnKSAPAT 883
Cdd:cd00063    79 GGG-ESPPSE 87
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 544-619 4.18e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 4.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 544 PDVPSGLEIVDRTHESITVSWSGVTDTGpSGVHHYTV----ALDGSVRT--RVAAGSTETTLEDLAPETEYEITVTAVDT 617
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVeyreKGSGDWKEveVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79


                  ..
gi 1379150216 618 AG 619
Cdd:cd00063    80 GG 81
fn3 pfam00041
Fibronectin type III domain;
795-877 8.45e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 53.57  E-value: 8.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 795 STPADLAVDGTTDESITVSWTESTDAGGSgVANYALWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAIDG 874
Cdd:pfam00041   1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGP-ITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGL-KPGTEYEVRVQAVNG 78


                  ...
gi 1379150216 875 AGN 877
Cdd:pfam00041  79 GGE 81
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 794-876 1.04e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.00  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  794 PSTPADLAVDGTTDESITVSWTESTDAGGSG-VANYalWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAI 872
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGyIVGY--RVEYREEGSEWKEVNVTPSSTSYTLTGL-KPGTEYEFRVRAV 77


                   ....
gi 1379150216  873 DGAG 876
Cdd:smart00060  78 NGAG 81
fn3 pfam00041
Fibronectin type III domain;
545-620 3.16e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 51.65  E-value: 3.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 545 DVPSGLEIVDRTHESITVSWSGVTDtGPSGVHHYTVAL------DGSVRTRVAAGSTETTLEDLAPETEYEITVTAVDTA 618
Cdd:pfam00041   1 SAPSNLTVTDVTSTSLTVSWTPPPD-GNGPITGYEVEYrpknsgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGG 79


                  ..
gi 1379150216 619 GN 620
Cdd:pfam00041  80 GE 81
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
788-887 5.98e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 56.55  E-value: 5.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 788 TADSIAPSTPADLAVDGTTDESITVSWTESTDaggSGVANYALW--ASTHGPVETVAETTvdgkTTQATLSGLiKADRTY 865
Cdd:COG3401   227 TTPTTPPSAPTGLTATADTPGSVTLSWDPVTE---SDATGYRVYrsNSGDGPFTKVATVT----TTSYTDTGL-TNGTTY 298

                          90       100
                  ....*....|....*....|..
gi 1379150216 866 QIHVQAIDGAGNKSAPATVLAA 887
Cdd:COG3401   299 YYRVTAVDAAGNESAPSNVVSV 320
Dockerin_II cd14254
Type II dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein ...
 920-968 3.98e-05

Type II dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II dockerins, which are responsible for mediating attachment of the cellulosome complex to the bacterial cell wall.


Pssm-ID: 271213  Cd Length: 54  Bit Score: 41.81  E-value: 3.98e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1379150216 920 DLSGDGRINFPDVNTLFQNTDSDRAARNSEFYDFTGDGVVDMQDVLALF 968
Cdd:cd14254     2 DVNGDGVVDIADLALVSQHFGKTSDAGYVPAADLNGDGVIDAADLALLA 50
TAT_signal pfam10518
TAT (twin-arginine translocation) pathway signal sequence;
19-44 6.47e-03

TAT (twin-arginine translocation) pathway signal sequence;


Pssm-ID: 463131 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 6.47e-03
                          10        20
                  ....*....|....*....|....*.
gi 1379150216  19 TRRDFLKktVGAGVAAAGLTGAVGTA 44
Cdd:pfam10518   3 SRRDFLK--GSAAAAAAAALGGCAAA 26
 
Name Accession Description Interval E-value
BglC COG2730
Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism];
66-375 5.97e-34

Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism];


Pssm-ID: 442036 [Multi-domain]  Cd Length: 295  Bit Score: 132.48  E-value: 5.97e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  66 GNEVVLRGVNIGDPKRLNVTASARGKTAEQVVRAAtdesdGWHSRFIRIPVQPWdvaelppvpmAWGMDDPPAEFVkvge 145
Cdd:COG2730     2 AMGPRLRGVNLGNWLELWFETLWGNITEEDIDAIA-----DWGFNTVRLPVSWE----------RLQDPDNPYTLD---- 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 146 eqgyyepplftadelETYIEtHLKPVVQACIDNDVYCIVDYHRHWGDGElaWAegdeygnpkgpNPGLDEEVRTFWDTVA 225
Cdd:COG2730    63 ---------------EAYLE-RVDEVVDWAKARGLYVILDLHHAPGYQG--WY-----------DAATQERFIAFWRQLA 113

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 226 PHFADVPNVL-FELYNEPTkpgwgpeDVIWNGWRSVAQPWVDIIREHAPRNMILIGNPRWSRMVWGIKYGEFDGDNLGYT 304
Cdd:COG2730   114 ERYKDYPNVLgFELLNEPH-------GATWADWNALAQRAIDAIRATNPDRLIIVEGNNWGGAHNLRALDPLDDDNLVYS 186

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 305 YHAYPGHAVT---------DFDDDTGNAWEQ---------APLFVTEWGYSEgrcKWICGNDQRFGTPFKEWASERPIHW 366
Cdd:COG2730   187 VHFYGPFVFThqgawfagpTYPANLEARLDNwgdwaadngVPVFVGEFGAYN---DDPDASRLAWLRDLLDYLEENGIGW 263


                  ....*....
gi 1379150216 367 TAWCFDPVW 375
Cdd:COG2730   264 TYWSFNPSG 272
Cellulase pfam00150
Cellulase (glycosyl hydrolase family 5);
148-373 2.87e-23

Cellulase (glycosyl hydrolase family 5);


Pssm-ID: 395098 [Multi-domain]  Cd Length: 272  Bit Score: 100.53  E-value: 2.87e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 148 GYYEPPLFTADELETYIEThLKPVVQACIDNDVYCIVDYHrhwgdgelawaegDEYGNPKGPNPGLDEEVR---TFWDTV 224
Cdd:pfam00150  48 GGYVPNNPDYLIDENWLNR-VDEVVDYAIDNGMYVIIDWH-------------HDGGWPGDPNGNIDTAKAffkKIWTQI 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 225 APHFADVPNVLFELYNEPTkpgwGPEDVIW-NGWRSVAQPWVDIIREHAPRNMILIGNPRWS--RMVWGIKYGEfDGDNL 301
Cdd:pfam00150 114 ATRYGNNPNVIFELMNEPH----GNDQATWaDDVKDYAQEAIDAIRAAGPNNLIIVGGNSWSqnPDGAALNDPN-DDDNL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 302 GYTYHAYPG----------HAVTDFDDDTGNAWEQA-----PLFVTEWG-------YSEGRCKWIcgndqrfgtpfkEWA 359
Cdd:pfam00150 189 IYSVHFYAPsdfsgtwfdcEDPTNLAQRLRAAANWAldngiPVFIGEFGggnadgpCRDEAEKWL------------DYL 256

                         250
                  ....*....|....
gi 1379150216 360 SERPIHWTAWCFDP 373
Cdd:pfam00150 257 KENGISWTGWSNGN 270
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
462-712 9.72e-17

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 85.05  E-value: 9.72e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 462 TSVAIGWDQPANPGdspFDGYVVYvdgRQRTTLGP-------DTTTYTVEELLSDTRYQISVTGIDVAGNEGRP-ATVTV 533
Cdd:COG3401   247 GSVTLSWDPVTESD---ATGYRVY---RSNSGDGPftkvatvTTTSYTDTGLTNGTTYYYRVTAVDAAGNESAPsNVVSV 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 534 TTDayddSTPPDVPSGLEIVDRTHESITVSWSGVTDTGPSGVHHYTVALDGSVRTRVAAGSTETTLED--LAPETEYEIT 611
Cdd:COG3401   321 TTD----LTPPAAPSGLTATAVGSSSITLSWTASSDADVTGYNVYRSTSGGGTYTKIAETVTTTSYTDtgLTPGTTYYYK 396

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 612 VTAVDTAGNESAASAPLAAATEVDRPGADALLLHTFDDRDAWPDGNCQ-GEGWTGQSGLTTEQSDGRIAVSYDGGGWMGS 690
Cdd:COG3401   397 VTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAaSAASNPGVSAAVLADGGDTGNAVPFTTTSST 476

                         250       260
                  ....*....|....*....|..
gi 1379150216 691 KLGTDISGYDYLKLRMAGAAGG 712
Cdd:COG3401   477 VTATTTDTTTANLSVTTGSLVG 498
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 544-619 2.43e-10

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 57.62  E-value: 2.43e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  544 PDVPSGLEIVDRTHESITVSWSGVTDTGPSG-VHHYTVALDGS----VRTRVAAGSTETTLEDLAPETEYEITVTAVDTA 618
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGyIVGYRVEYREEgsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                   .
gi 1379150216  619 G 619
Cdd:smart00060  81 G 81
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
411-639 5.15e-10

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 63.10  E-value: 5.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 411 DWRVLGQDGNYAGVLVKDWLTEVREDSVPQVDYDPHPPAAPPDLAATAVDQTSVAIGWDQPANPGDSPFDGYVVYVDGRQ 490
Cdd:COG3401   106 ATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSVAGAGVVVSPDTSATAAVATTSL 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 491 RTTlgPDTTTYTVEELLSDTRYQISVTGIDVAGNEGRPATVTVTTDayddSTPPDVPSGLEIVDRTHESITVSWSGVTDT 570
Cdd:COG3401   186 TVT--STTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTP----TTPPSAPTGLTATADTPGSVTLSWDPVTES 259

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1379150216 571 GPSGvhhYTV--ALDGSVRTRVAAGSTETTLED--LAPETEYEITVTAVDTAGNESAASAPLAAATEVDRPGA 639
Cdd:COG3401   260 DATG---YRVyrSNSGDGPFTKVATVTTTSYTDtgLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLTPPAA 329
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 794-883 2.54e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 55.20  E-value: 2.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 794 PSTPADLAVDGTTDESITVSWTESTDAGGSgVANYALWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAID 873
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGP-ITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGL-KPGTEYEFRVRAVN 78

                          90
                  ....*....|
gi 1379150216 874 GAGnKSAPAT 883
Cdd:cd00063    79 GGG-ESPPSE 87
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 544-619 4.18e-09

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 54.42  E-value: 4.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 544 PDVPSGLEIVDRTHESITVSWSGVTDTGpSGVHHYTV----ALDGSVRT--RVAAGSTETTLEDLAPETEYEITVTAVDT 617
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVeyreKGSGDWKEveVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79


                  ..
gi 1379150216 618 AG 619
Cdd:cd00063    80 GG 81
fn3 pfam00041
Fibronectin type III domain;
795-877 8.45e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 53.57  E-value: 8.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 795 STPADLAVDGTTDESITVSWTESTDAGGSgVANYALWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAIDG 874
Cdd:pfam00041   1 SAPSNLTVTDVTSTSLTVSWTPPPDGNGP-ITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGL-KPGTEYEVRVQAVNG 78


                  ...
gi 1379150216 875 AGN 877
Cdd:pfam00041  79 GGE 81
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 794-876 1.04e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.00  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  794 PSTPADLAVDGTTDESITVSWTESTDAGGSG-VANYalWASTHGPVETVAETTVDGKTTQATLSGLiKADRTYQIHVQAI 872
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGyIVGY--RVEYREEGSEWKEVNVTPSSTSYTLTGL-KPGTEYEFRVRAV 77


                   ....
gi 1379150216  873 DGAG 876
Cdd:smart00060  78 NGAG 81
fn3 pfam00041
Fibronectin type III domain;
545-620 3.16e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 51.65  E-value: 3.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 545 DVPSGLEIVDRTHESITVSWSGVTDtGPSGVHHYTVAL------DGSVRTRVAAGSTETTLEDLAPETEYEITVTAVDTA 618
Cdd:pfam00041   1 SAPSNLTVTDVTSTSLTVSWTPPPD-GNGPITGYEVEYrpknsgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGG 79


                  ..
gi 1379150216 619 GN 620
Cdd:pfam00041  80 GE 81
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
788-887 5.98e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 56.55  E-value: 5.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 788 TADSIAPSTPADLAVDGTTDESITVSWTESTDaggSGVANYALW--ASTHGPVETVAETTvdgkTTQATLSGLiKADRTY 865
Cdd:COG3401   227 TTPTTPPSAPTGLTATADTPGSVTLSWDPVTE---SDATGYRVYrsNSGDGPFTKVATVT----TTSYTDTGL-TNGTTY 298

                          90       100
                  ....*....|....*....|..
gi 1379150216 866 QIHVQAIDGAGNKSAPATVLAA 887
Cdd:COG3401   299 YYRVTAVDAAGNESAPSNVVSV 320
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
788-912 1.69e-07

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 55.01  E-value: 1.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 788 TADSIAPSTPADLAVDGTTDESITVSWTESTDAGgsgVANYALWASTH--GPVETVAETTvdgKTTQATLSGLiKADRTY 865
Cdd:COG3401   321 TTDLTPPAAPSGLTATAVGSSSITLSWTASSDAD---VTGYNVYRSTSggGTYTKIAETV---TTTSYTDTGL-TPGTTY 393

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1379150216 866 QIHVQAIDGAGNKSAPATVLAATTGDGDPPTTTPTDEPDWPAGATDP 912
Cdd:COG3401   394 YYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAG 440
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 459-535 1.89e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 49.80  E-value: 1.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 459 VDQTSVAIGWDQPANPGdSPFDGYVVYV------DGRQRTTLGPDTTTYTVEELLSDTRYQISVTGIDVAGnEGRPAT-V 531
Cdd:cd00063    12 VTSTSVTLSWTPPEDDG-GPITGYVVEYrekgsgDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG-ESPPSEsV 89


                  ....
gi 1379150216 532 TVTT 535
Cdd:cd00063    90 TVTT 93
fn3 pfam00041
Fibronectin type III domain;
459-524 3.25e-06

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 45.87  E-value: 3.25e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1379150216 459 VDQTSVAIGWdQPANPGDSPFDGYVVYV------DGRQRTTLGPDTTTYTVEELLSDTRYQISVTGIDVAGN 524
Cdd:pfam00041  11 VTSTSLTVSW-TPPPDGNGPITGYEVEYrpknsgEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGE 81
COG4733 COG4733
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
461-884 4.08e-06

Phage-related protein, tail protein J [Mobilome: prophages, transposons];


Pssm-ID: 443767 [Multi-domain]  Cd Length: 978  Bit Score: 51.10  E-value: 4.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 461 QTSVAIGWDQPANpgdspFDGYVVYV--DGRQRTTLGPDTTTYTVEELLSDTRYQISVTGIDVAGNEGRPATvTVTTDAY 538
Cdd:COG4733   551 VTTLTVSWDAPAG-----AVAYEVEWrrDDGNWVSVPRTSGTSFEVPGIYAGDYEVRVRAINALGVSSAWAA-SSETTVT 624

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 539 DDSTPPDVPSGLEIVDRThESITVSWSGVTDTGPSGVH-HYTVALDGSVRT--RVAAGSTETTLEDLAPETEYEITVTAV 615
Cdd:COG4733   625 GKTAPPPAPTGLTATGGL-GGITLSWSFPVDADTLRTEiRYSTTGDWASATvaQALYPGNTYTLAGLKAGQTYYYRARAV 703

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 616 DTAGNESAASAPLAAATEVDRPGADALLLHTFDDRDAWPDGNCQGEGWTGQSGLTTEQSDGRIAVSYDGGGWM-GSKLGT 694
Cdd:COG4733   704 DRSGNVSAWWVSGQASADAAGILDAITGQILETELGQELDAIIQNATVAEVVAATVTDVTAQIDTAVLFAGVAtAAAIGA 783

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 695 DISGYDYL--KLRMAGAAGGEHEQVSIRLGGQSSSFEDTIGALSGQELGTEMSVLAVDLAANDAPATPAEFRLFFEGTGS 772
Cdd:COG4733   784 EARVAATVaeSATAAAATGTAADAAGDASGGVTAGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAIIESGNTGDIVAT 863

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 773 VTLDDVWLDSVPPGETADSIApstPADLAVDGTTDESITVSWTESTDAGGSGVANYALWASTHGPVETVAETTVDGKTTQ 852
Cdd:COG4733   864 GDIASAAAGAVATTVSGTTAA---DVSAVADSTAASLTAIVIAATTIIDAIGDGTTREPAGDIGASGGAQGFAVTIVGSF 940

                         410       420       430
                  ....*....|....*....|....*....|..
gi 1379150216 853 ATlsglIKADRTYQIHVQAIDGAGNKSAPATV 884
Cdd:COG4733   941 DG----AGAVATVDAGQSVVDGVGTAVEAANG 968
COG3979 COG3979
Chitodextrinase [Carbohydrate transport and metabolism];
542-920 1.16e-05

Chitodextrinase [Carbohydrate transport and metabolism];


Pssm-ID: 443178 [Multi-domain]  Cd Length: 369  Bit Score: 48.61  E-value: 1.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 542 TPPDVPSGLEIVDRTHESITVSWSGVTDTgpSGVHHYTVALDGSVRTrVAAGSTETTLEDLAPETEYEITVTAVDTAGNE 621
Cdd:COG3979     1 QAPTAPTGLTASNVTSSSVSLSWDASTDN--VGVTGYDVYRGGDQVA-TVTGLTAWTVTGLTPGTEYTFTVGACDAAGNV 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 622 SAASAPLAAATEVDRPGADalllhTFDDRDAWPDGNCQGEGWTGQSGLTTEQSDGRIAVSYDGGGWMGSKLGTDISGYDY 701
Cdd:COG3979    78 SAASGTSTAMFGGSSTTLG-----SAEGVADTSGNLAASGAFFGVTTPPTPSSTLVVDGTTTVNAAATANGGTGGSGGTT 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 702 LKLRMAGAAGGEHEQVSIRLGGQSSSFEDTIGALSGQELGTEMSVLAVDLAANDAPATPAEFRLFfegtgSVTLDDVWLD 781
Cdd:COG3979   153 TIITTGVEGGGGSKTAQSLNAITAAGTAALNGGVVGGADEVLTCSAVKDDGSGGAGAGNTYWALN-----TLGVSDTPSG 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216 782 SVPPGETADSIAPSTPADLAVDGTTDESITVSWTESTDAGGSGVANYALWASTHGPVETVAETTVDGKTTQATLSGLIKA 861
Cdd:COG3979   228 TTATGGTVGITSAYGAGVSGNAAVNVNAGFVVGNVGGAAGNTGTTSGTATSDAATNDVGDAAVTGLNDGAANGPTGGYGA 307

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1379150216 862 DRTYQIHVQAIDGAGNKSAPATVLAATTGDGDPPTTTPTDEPDWPAGATDPDGDGLFED 920
Cdd:COG3979   308 TGTTVAGAAGVGGTKSGTGALGLSGAGGAGAAVSGTATGDDDAGADDSTAGVSGAGSTT 366
Dockerin_II cd14254
Type II dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein ...
 920-968 3.98e-05

Type II dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II dockerins, which are responsible for mediating attachment of the cellulosome complex to the bacterial cell wall.


Pssm-ID: 271213  Cd Length: 54  Bit Score: 41.81  E-value: 3.98e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1379150216 920 DLSGDGRINFPDVNTLFQNTDSDRAARNSEFYDFTGDGVVDMQDVLALF 968
Cdd:cd14254     2 DVNGDGVVDIADLALVSQHFGKTSDAGYVPAADLNGDGVIDAADLALLA 50
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 459-523 9.65e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.83  E-value: 9.65e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379150216  459 VDQTSVAIGWDQPANPG-DSPFDGYVVYVDGR----QRTTLGPDTTTYTVEELLSDTRYQISVTGIDVAG 523
Cdd:smart00060  12 VTSTSVTLSWEPPPDDGiTGYIVGYRVEYREEgsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
TAT_signal pfam10518
TAT (twin-arginine translocation) pathway signal sequence;
19-44 6.47e-03

TAT (twin-arginine translocation) pathway signal sequence;


Pssm-ID: 463131 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 6.47e-03
                          10        20
                  ....*....|....*....|....*.
gi 1379150216  19 TRRDFLKktVGAGVAAAGLTGAVGTA 44
Cdd:pfam10518   3 SRRDFLK--GSAAAAAAAALGGCAAA 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH