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Conserved domains on  [gi|1381392414|gb|AWC26643|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Anopheles gambiae]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-175 3.35e-88

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 268.55  E-value: 3.35e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   1 FYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLL 80
Cdd:MTH00165  168 FYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLL 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  81 LVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRM 160
Cdd:MTH00165  248 LISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRF 327

                         170
                  ....*....|....*
gi 1381392414 161 MGSLSMSMPLTCSCF 175
Cdd:MTH00165  328 MGGLSNFMPLTSSCF 342
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-175 3.35e-88

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 268.55  E-value: 3.35e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   1 FYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLL 80
Cdd:MTH00165  168 FYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLL 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  81 LVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRM 160
Cdd:MTH00165  248 LISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRF 327

                         170
                  ....*....|....*
gi 1381392414 161 MGSLSMSMPLTCSCF 175
Cdd:MTH00165  328 MGGLSNFMPLTSSCF 342
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-175 8.51e-59

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 193.06  E-value: 8.51e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLM--NWWMAqFLLLVSGLTMFMAG 91
Cdd:COG1009   212 LILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFAlsPVWLT-VVAIIGAITALFAA 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  92 LGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 171
Cdd:COG1009   291 LIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPIT 369


                  ....
gi 1381392414 172 CSCF 175
Cdd:COG1009   370 AITF 373
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-175 1.73e-45

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 157.44  E-value: 1.73e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDV-LMNWWMAQFLLLVSGLTMFMA 90
Cdd:TIGR01974 212 LTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:TIGR01974 292 ATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPV 371


                  ....*
gi 1381392414 171 TCSCF 175
Cdd:TIGR01974 372 TYITF 376
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-175 3.15e-43

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 145.15  E-value: 3.15e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   2 YLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDVLM--NWWMAQF 78
Cdd:pfam00361  71 ALTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLpsSPFIQQI 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  79 LLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNS 155
Cdd:pfam00361 150 LLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHT 229

                         170       180
                  ....*....|....*....|
gi 1381392414 156 QDIRMMGSLSMSMPLTCSCF 175
Cdd:pfam00361 230 RNIRDYGGLAKTMPILALVF 249
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-175 3.35e-88

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 268.55  E-value: 3.35e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   1 FYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLL 80
Cdd:MTH00165  168 FYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLL 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  81 LVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRM 160
Cdd:MTH00165  248 LISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRF 327

                         170
                  ....*....|....*
gi 1381392414 161 MGSLSMSMPLTCSCF 175
Cdd:MTH00165  328 MGGLSNFMPLTSSCF 342
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-175 7.17e-75

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 233.97  E-value: 7.17e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   1 FYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVL-MNWWMAQFL 79
Cdd:MTH00151  164 WSILSMWDFKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLsSSSGFSSFL 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  80 LLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIR 159
Cdd:MTH00151  244 LFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIR 323

                         170
                  ....*....|....*.
gi 1381392414 160 MMGSLSMSMPLTCSCF 175
Cdd:MTH00151  324 LLGSLFLSLPLTSGCL 339
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 3-175 1.51e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 210.01  E-value: 1.51e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   3 LDMMKNNIEMMIIGGlVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMN-WWMAQFLLL 81
Cdd:MTH00207  170 TNMWQTDMNNYIALS-IMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSStYWFNPALLL 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  82 VSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMM 161
Cdd:MTH00207  249 TASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTM 328

                         170
                  ....*....|....
gi 1381392414 162 GSLSMSMPLTCSCF 175
Cdd:MTH00207  329 GNLTNQMPLTTSCL 342
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 12-174 1.23e-61

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 199.49  E-value: 1.23e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQF-LLLVSGLTMFMA 90
Cdd:MTH00209  174 GSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFFSMsLLLLGSLTTLMA 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:MTH00209  254 SMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPI 333


                  ....
gi 1381392414 171 TCSC 174
Cdd:MTH00209  334 TSIC 337
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 14-175 8.51e-59

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 193.06  E-value: 8.51e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLM--NWWMAqFLLLVSGLTMFMAG 91
Cdd:COG1009   212 LILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFAlsPVWLT-VVAIIGAITALFAA 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  92 LGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 171
Cdd:COG1009   291 LIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPIT 369


                  ....
gi 1381392414 172 CSCF 175
Cdd:COG1009   370 AITF 373
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 5-175 1.72e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 186.70  E-value: 1.72e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   5 MMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQ-FLLLVS 83
Cdd:MTH00211  196 LFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLILgAVLLLG 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  84 GLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGS 163
Cdd:MTH00211  276 ALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGG 355

                         170
                  ....*....|..
gi 1381392414 164 LSMSMPLTCSCF 175
Cdd:MTH00211  356 LSKNLPFTSSCL 367
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 5-174 5.27e-53

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 177.28  E-value: 5.27e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   5 MMKNNIEMMIIGGLvMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFL-LLVS 83
Cdd:MTH00004  202 FSPTQTPTLPLLGL-ILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQTALTIcLCLG 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  84 GLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGS 163
Cdd:MTH00004  281 ALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGG 360

                         170
                  ....*....|.
gi 1381392414 164 LSMSMPLTCSC 174
Cdd:MTH00004  361 LQKTLPITSSC 371
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 13-174 9.53e-51

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 171.69  E-value: 9.53e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  13 MIIGGLvmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNW-WMAQFLLLVSGLTMFMAG 91
Cdd:MTH00208  238 LLFGIL--LAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSpWFLSLCLILGSLTALFAA 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  92 LGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 171
Cdd:MTH00208  316 STAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVT 395


                  ...
gi 1381392414 172 CSC 174
Cdd:MTH00208  396 SSC 398
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 5-174 6.51e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 166.57  E-value: 6.51e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   5 MMKNNIEMMIIGGLVmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSG 84
Cdd:MTH00108  203 MLNPNNSNLPLMGLL-LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLCLG 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  85 --LTMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMG 162
Cdd:MTH00108  282 aiTTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMG 360

                         170
                  ....*....|..
gi 1381392414 163 SLSMSMPLTCSC 174
Cdd:MTH00108  361 GLFKTLPFTSTA 372
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 12-175 1.02e-46

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 160.71  E-value: 1.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDV-LMNWWMAQFLLLVSGLTMFMA 90
Cdd:PRK06590  216 LTLICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLfELSPEALLFVAIVGAVTALFA 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:PRK06590  296 AFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPV 375


                  ....*
gi 1381392414 171 TCSCF 175
Cdd:PRK06590  376 TYATF 380
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 17-175 1.37e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 160.38  E-value: 1.37e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  17 GLVmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSG-LTMFMAGLGAN 95
Cdd:MTH00137  220 GLI-LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLMENNQTALTTCLCLGaLTTLFTATCAL 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  96 FEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLTCSCF 175
Cdd:MTH00137  299 TQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCL 378
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 6-174 1.92e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 159.69  E-value: 1.92e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   6 MKNNIEMMIIGGLVmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSG- 84
Cdd:MTH00066  201 LLNDNSTLPLLGLI-LAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTICLCLGa 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  85 LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSL 164
Cdd:MTH00066  280 LTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGL 359

                         170
                  ....*....|
gi 1381392414 165 SMSMPLTCSC 174
Cdd:MTH00066  360 QKALPITTSC 369
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-175 1.73e-45

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 157.44  E-value: 1.73e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDV-LMNWWMAQFLLLVSGLTMFMA 90
Cdd:TIGR01974 212 LTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:TIGR01974 292 ATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPV 371


                  ....*
gi 1381392414 171 TCSCF 175
Cdd:TIGR01974 372 TYITF 376
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-175 3.15e-43

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 145.15  E-value: 3.15e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   2 YLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDVLM--NWWMAQF 78
Cdd:pfam00361  71 ALTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLpsSPFIQQI 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  79 LLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNS 155
Cdd:pfam00361 150 LLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHT 229

                         170       180
                  ....*....|....*....|
gi 1381392414 156 QDIRMMGSLSMSMPLTCSCF 175
Cdd:pfam00361 230 RNIRDYGGLAKTMPILALVF 249
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-171 3.77e-42

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 148.30  E-value: 3.77e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   1 FYLDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLL 80
Cdd:MTH00020  198 FNMVVSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIV 277

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  81 LVSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIR 159
Cdd:MTH00020  278 TIVGsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMR 357

                         170
                  ....*....|..
gi 1381392414 160 MMGSLSMSMPLT 171
Cdd:MTH00020  358 KMGGLISFLPLT 369
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 8-171 1.69e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 146.69  E-value: 1.69e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   8 NNIEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSG-LT 86
Cdd:MTH00210  206 NKESLTIICLLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVTILGaLT 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  87 MFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSM 166
Cdd:MTH00210  286 AFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIK 365


                  ....*
gi 1381392414 167 SMPLT 171
Cdd:MTH00210  366 SIPFT 370
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
18-175 1.06e-40

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 144.78  E-value: 1.06e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSG-LTMFMAGLGANF 96
Cdd:PRK07376  232 LVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQFPAVMTVIAWTGaITAFLGASIALT 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  97 EFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKN--------SQDIRMMGSLSMSM 168
Cdd:PRK07376  312 QNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYM 391


                  ....*..
gi 1381392414 169 PLTCSCF 175
Cdd:PRK07376  392 PITAITF 398
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 18-166 4.23e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 141.59  E-value: 4.23e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSGLTMFMAGLGANFE 97
Cdd:MTH00095  169 MLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVE 248

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1381392414  98 FDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSM 166
Cdd:MTH00095  249 EDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGN 317
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-171 4.91e-38

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 137.74  E-value: 4.91e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVL--MNWWMAqFLLLVSGLTMFMAGLGAN 95
Cdd:PRK12647  200 LVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQT-ILPLFGGLTMLTGALLAV 278

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1381392414  96 FEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 171
Cdd:PRK12647  279 RQTDLKLILAYSTVSALGTLVMLLGLGSelaIKAAVLFLVAHSLYKGALFMVAGIIDHET-GTRDITKLGGLRRAMPIT 356
ndhF CHL00025
NADH dehydrogenase subunit 5
 18-175 1.01e-36

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 133.86  E-value: 1.01e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR----FNDV--LMNwwmaqFLLLVSGLTMFmag 91
Cdd:CHL00025  232 LLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARllplFIVIpyIMN-----LISLIGIITAL--- 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  92 LGANFEF---DLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNM--------KNSQDIRM 160
Cdd:CHL00025  304 LGATLALaqkDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVL 383

                         170
                  ....*....|....*
gi 1381392414 161 MGSLSMSMPLTCSCF 175
Cdd:CHL00025  384 MGGLRKYMPITKTTF 398
PRK12650 PRK12650
DUF4040 family protein;
14-171 1.24e-36

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 134.01  E-value: 1.24e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMN--WWmaQFLLLVSGL-TMFMA 90
Cdd:PRK12650  209 VVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDvaVW--NWLLIIVGMiTALMG 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGF-YKL--AFFHLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMS 167
Cdd:PRK12650  287 AVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpFALtaAVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRR 365


                  ....
gi 1381392414 168 MPLT 171
Cdd:PRK12650  366 MPFT 369
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-171 1.44e-35

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 130.69  E-value: 1.44e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVL--MNWWmaqfLLLVSG---LTMFMAGL 92
Cdd:PRK12648  212 LILLGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLagTEEW----FWIVGGaglITLLLGAY 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  93 GANFEFDLKKIIALSTLSQLGLMMSILSMGfYKLA----FFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSM 168
Cdd:PRK12648  288 FALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAG-IIDHETGTRDMRRLSGLRRLM 365


                  ...
gi 1381392414 169 PLT 171
Cdd:PRK12648  366 PIT 368
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 18-171 2.99e-35

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 130.05  E-value: 2.99e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNwwMAQFLLLVSG---LTMFMAGLGA 94
Cdd:PRK12645  215 LILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAG--SQVWFWTVTLvglITLFWGSLNA 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  95 NFEFDLKKIIALSTLSQLGLMMSILSMG------------FYKLAF----FHLLTHALFKALLFMCAGSIIHNMkNSQDI 158
Cdd:PRK12645  293 VKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGSLFMIVGIVDHET-GTRDI 371

                         170
                  ....*....|...
gi 1381392414 159 RMMGSLSMSMPLT 171
Cdd:PRK12645  372 RKLGGLMTIMPIT 384
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 18-171 1.19e-33

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 125.34  E-value: 1.19e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSGL-TMFMAGLGANF 96
Cdd:TIGR00940 211 LVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTEAWFWIVGLAGLiTLLWGSYFAIF 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  97 EFDLKKIIALSTLSQLGLMMSILSMG------------FYKLAF----FHLLTHALFKALLFMCAGSIIHNmKNSQDIRM 160
Cdd:TIGR00940 291 QQDLKGILAFSTISQLGLIMVLLGLGspsyhyqgddskIYALAAvaavFHLINHATFKGSLFMAAGIIDHE-TGTRDIRK 369

                         170
                  ....*....|.
gi 1381392414 161 MGSLSMSMPLT 171
Cdd:TIGR00940 370 LGGLFHIMPIT 380
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 14-171 2.10e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 124.30  E-value: 2.10e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSG-LTMFMAGL 92
Cdd:MTH00032  226 IIGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIFGaLTAFFAAT 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  93 GANFEFDLKKIIALSTLSQLGLMMSILSM-GFYKLAFFHLLTHALFKALLFMCAGSIIHNMK-NSQDIRMMGSLSMSMPL 170
Cdd:MTH00032  306 VGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPF 385


                  .
gi 1381392414 171 T 171
Cdd:MTH00032  386 T 386
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 13-167 5.55e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 122.29  E-value: 5.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  13 MIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSGLTMFMAGL 92
Cdd:MTH00063  157 FLCCLFFFLIVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGV 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1381392414  93 GANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMS 167
Cdd:MTH00063  237 SSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILY 311
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-172 1.04e-32

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 122.73  E-value: 1.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR----FNDVLMnWwmaQFLLLVSGL-TMFMAGL 92
Cdd:PRK12644  208 LILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARlapgFADVPV-W---RPTVLVLGLaTMLLGGW 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  93 GANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHL---LTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMP 169
Cdd:PRK12644  284 RALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQP 362


                  ...
gi 1381392414 170 LTC 172
Cdd:PRK12644  363 VLA 365
PRK12646 PRK12646
DUF4040 family protein;
18-171 1.13e-30

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 116.78  E-value: 1.13e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVL-MNWWMAQFLLLVSGLTMFMAGLGANF 96
Cdd:PRK12646  215 MFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLgLSNMYIYIVTFVGLITMLFGSITALK 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  97 EFDLKKIIALSTLSQLGLMMSILSMG-------------FYKL----AFFHLLTHALFKALLFMCAGsIIHNMKNSQDIR 159
Cdd:PRK12646  295 QWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfaALFHLMNHAIFKCALFMGVG-IIDHEAGTRDIR 373

                         170
                  ....*....|..
gi 1381392414 160 MMGSLSMSMPLT 171
Cdd:PRK12646  374 ILSGMRQLFPKM 385
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-171 6.63e-29

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 111.84  E-value: 6.63e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNwwMAQFLLLVSG---LTMFMAGLGA 94
Cdd:PRK12649  219 LIFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSG--TEAWFILVSGtgmITMVLAGFLA 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  95 NFEFDLKKIIALSTLSQLGLMMSILSMGFYK-------LAFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMS 167
Cdd:PRK12649  297 FRQTDIKAILAYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKE 375


                  ....
gi 1381392414 168 MPLT 171
Cdd:PRK12649  376 MPIT 379
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 12-175 2.20e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 106.00  E-value: 2.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMTKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFN----DVLMNWWMAQFLLLVSGLT 86
Cdd:COG0651   204 LLAAFALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALL-SGLLTKVGVYAILRVLtllfGADPALFLGTLLLVLGLLT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  87 MFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKL---AFFHLLTHALFKALLFMCAGSIIHnMKNSQDIRMMGS 163
Cdd:COG0651   283 MLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIER-ATGTRDLDKLGG 361

                         170
                  ....*....|..
gi 1381392414 164 LSMSMPLTCSCF 175
Cdd:COG0651   362 LGKRMPLTAAAF 373
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 17-175 9.64e-24

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 96.58  E-value: 9.64e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  17 GLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNdVLMNW---WMAQFLLLVSGLTMFMAGLG 93
Cdd:PRK06525  211 LGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAI-QSMGPiphVIGYVGAVMAIVTLLYGFLM 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  94 ANFEFDLKKIIALSTLSQLGLMMSILSMGFY------KLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMS 167
Cdd:PRK06525  290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAILgsrlalEGSIAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKK 368


                  ....*...
gi 1381392414 168 MPLTCSCF 175
Cdd:PRK06525  369 LPLVGVGF 376
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-175 2.91e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 94.95  E-value: 2.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR----------FNDVLMNWwmaqFLLLVS 83
Cdd:PRK08375  203 TAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRiyftvfggdfRFALGLGW----LLAVLA 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  84 GLTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRM 160
Cdd:PRK08375  279 LLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTY-GTRRLSE 357

                         170
                  ....*....|....*
gi 1381392414 161 MGSLSMSMPLTCSCF 175
Cdd:PRK08375  358 LSGLGRRMPLTAAAF 372
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-149 2.48e-22

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 92.45  E-value: 2.48e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSStLVTAGVYLLIRFNDVLMNWWMAQFLLL-VSGLTMFMAGLGANF 96
Cdd:PRK08168  205 LLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQAPPARWLLVlVGLATAVLAGLVMLT 283

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1381392414  97 EFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSII 149
Cdd:PRK08168  284 RISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASEAV 336
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 11-149 1.88e-21

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 90.09  E-value: 1.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  11 EMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSStLVTAGVYLLIRFNDVLMNWWmAQFLLLVSGLTMFMA 90
Cdd:PRK08601  202 EKTGINLLLILAVMIPAAQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDI-AQILLLIFASISVLI 279

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANF-EFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSII 149
Cdd:PRK08601  280 GTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAV 339
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 17-175 1.80e-20

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 87.27  E-value: 1.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  17 GLVMLAA-MTKSAQIPFSSWLPAAMAAPTPVSALvHSSTLVTAGVYLLIRFNDVL-MNWWMAQFLLLVSGLTMFMAGLGA 94
Cdd:PRK07390  224 GLALIAGpTGKCAQFPLHLWLDEAMEGPNPASIL-RNSVVVATGAWVLIKLQPVLaLSPVALTVLIVIGTVTAIGASLVA 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  95 NFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMPLTCSC 174
Cdd:PRK07390  303 IAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLA 381


                  .
gi 1381392414 175 F 175
Cdd:PRK07390  382 F 382
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-175 7.92e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 82.69  E-value: 7.92e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  17 GLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFndVLMNWWMAQFLLLVSGLTMFMAGLGANF 96
Cdd:PRK07234  188 ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRC--ALDVPGLDLIVRIFGVGTALLGVLFALL 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  97 EFDLKKIIALSTLSQLG-LMMSILSMGFYKLAffhlltHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSMPLTCSCF 175
Cdd:PRK07234  266 EKDLKRMLAFSTISQLGfILAAPLVGGLYALA------HGLVKSTLFLCAG-ALPSRNFTELISQMLGIGKWIPLTMASF 338
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-171 9.49e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 76.78  E-value: 9.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR-----FNDVLMNWWMAQF--LLLVSGLT 86
Cdd:PRK06589  211 IILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKillyiFGLSYLQRIFAEFnwLIFIPIVS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  87 MFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGFYKLAFFHLLTHALFKALLFMCAGSIIhNMKNSQDIRMMGS 163
Cdd:PRK06589  291 IFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGSIY-SLKKEDQVDKLHG 369


                  ....*...
gi 1381392414 164 LSMSMPLT 171
Cdd:PRK06589  370 TSKSFPLI 377
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-175 1.04e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 76.55  E-value: 1.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  14 IIGGLVMLAAMTKSAQIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRF-------NDVLMNWWMA-QFLLLVSG 84
Cdd:PRK12667  224 VALALALWAFTIKAAIFPNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFlytifgiSPSLIDFRAAlSPILIILG 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  85 -LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRM 160
Cdd:PRK12667  303 aVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDE 381

                         170
                  ....*....|....*
gi 1381392414 161 MGSLSMSMPLTCSCF 175
Cdd:PRK12667  382 LAGLGRKMPIASFAF 396
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 26-175 2.92e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 72.46  E-value: 2.92e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  26 KSAQIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRF-NDVLMN--WWmaQFLLLVSGLTMFMAGLGANF-EFDL 100
Cdd:PRK08667  218 KAGIIPFHKWLPYAHpASPSNVSALM-SGVMLKVAVYGLVRFlMDVLSPelWW--GVLILLAGSISALLGVIYALkEHDL 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414 101 KKIIALSTLSQLGLMMsiLSMGFYKL----------------AFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSL 164
Cdd:PRK08667  295 KGLLAYSSIENIGIIL--MGIGLYVIfgvygldtlallalggALFHSLNHALFKSLLFLTAGSVVHAT-GTRNIEKMGGL 371

                         170
                  ....*....|.
gi 1381392414 165 SMSMPLTCSCF 175
Cdd:PRK08667  372 VKLMPYTSALF 382
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 18-175 8.66e-15

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 71.07  E-value: 8.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFN-DVLMN--WWMAQFLLLVSGLTMFMAGLG 93
Cdd:PRK06521  215 LALFGFGAKAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVfDLLGApgWWWGVLVLALGAISAVLGVLY 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  94 ANFEFDLKKIIALSTLSQLGLM-MSI-LSMGFYKL------------AFFHLLTHALFKALLFMCAGSIIHNMkNSQDIR 159
Cdd:PRK06521  294 ALAEHDLKRLLAYSTIENIGIIfVGLgLAMVFIAYgmpllaalaltaALYHLLNHALFKSLLFLGAGAVLHAT-GTRDME 372

                         170
                  ....*....|....*.
gi 1381392414 160 MMGSLSMSMPLTCSCF 175
Cdd:PRK06521  373 KLGGLIRRMPWTAWAF 388
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 2-175 1.25e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 64.72  E-value: 1.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   2 YLDMMKNNIEM---MIIGGLVMLAAMTKSAQIPFSSWLP-AAMAAPTPVSALvHSSTLVTAGVYLLIRFNDVLMN---WW 74
Cdd:COG1008   195 IAELAAAPLPLtaqLLLFLAFFIAFAVKVPMFPFHTWLPdAHVEAPTAGSVL-LAGVLLKMGGYGLLRFALPLFPeasAY 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  75 MAQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsilsMGFYKL-------AFFHLLTHALFKALLFMCAGS 147
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL----LGIFALnplglqgAVLQMVSHGLITAALFLLVGV 349

                         170       180
                  ....*....|....*....|....*...
gi 1381392414 148 IIHNMKnSQDIRMMGSLSMSMPLTCSCF 175
Cdd:COG1008   350 LYDRTH-TRDIADLGGLAKRMPVLAALF 376
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 13-171 1.81e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.25  E-value: 1.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  13 MIIGGLVMLAAMTKSAQIPFSSWLPAAMA-APTPVSAlVHSSTLVTAGVYLLIRFNDVLMN----WWMAQF--------- 78
Cdd:PRK08668  196 LIVFLFLLAFGVAKAGIFPLHVWAPDAYSeAPQSFSA-VLSGQLSKLGAYGFLLVLYVLPGtklfSEFGTYrgvplfnyi 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  79 LLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNS 155
Cdd:PRK08668  275 LAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTslgFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTT 354

                         170
                  ....*....|....*.
gi 1381392414 156 QdIRMMGSLSMSMPLT 171
Cdd:PRK08668  355 K-ISEMGGLIEKMPFT 369
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 18-171 4.21e-12

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 63.25  E-value: 4.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDVL--MNWW--MAQFLLLVSGLTMFMAGL 92
Cdd:PRK08377  211 LLIFGLAVEAELFPLNAWAPDAyQAAPHPITVMF-SAFVVKAGLYAMARILYLMqnANGWssVLKLVIIMATLTVFFAEL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  93 GANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMP 169
Cdd:PRK08377  290 SALRQKNVKRMIAYSSIGQVGMIALALALGTqagVDAGVFHMINHAIVKALLFLAVGYVGITLG-GTEIEKFEGLGKRMP 368


                  ..
gi 1381392414 170 LT 171
Cdd:PRK08377  369 LT 370
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
18-175 4.86e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 60.29  E-value: 4.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFndvlmnwwMAQFLLLVsGLTMFMAGLGANF- 96
Cdd:PRK12668  188 LILIGFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARA--------FPGTELLI-YIGAAMAVYGVFFa 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  97 --EFDLKKIIALSTLSQLGLMMSILSMGfYKL----AFFHLLTHALFKALLFMCAGSIIHnMKNSQDIRMMGSLSMSMPL 170
Cdd:PRK12668  259 llENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAGAVLY-RTGTEKLTELGGLYRSMPL 336


                  ....*
gi 1381392414 171 TCSCF 175
Cdd:PRK12668  337 TALFC 341
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
3-170 3.40e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 57.65  E-value: 3.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414   3 LDMMKNNIEMMIIGGLVMLAAMTKSAQIPFSsWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWWMA---QFL 79
Cdd:PRK12663  197 LNDMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQEREllhPLL 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  80 LLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHnMKNSQ 156
Cdd:PRK12663  276 ATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILlglALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVR-LTGYR 354

                         170
                  ....*....|....
gi 1381392414 157 DIRMMGSLSMSMPL 170
Cdd:PRK12663  355 SLQYLGGLYRKEPL 368
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 30-170 3.79e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 57.53  E-value: 3.79e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  30 IPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF---NDVLMNWWmAQFLLLVSGLTMFMAGLGANFEFDLKKIIAL 106
Cdd:PRK08042  197 IPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLsllGGNAPLWW-GVALLVLGMITAFVGGLYALMEHNIQRLLAY 275

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381392414 107 STLSQLGLMMSILSMGFYKLA--------------FFHLLTHALFKALLFMCAGSIIHNMKNsQDIRMMGSLSMSMPL 170
Cdd:PRK08042  276 HTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLGAGSVWFRTGH-RDIEKLGGIGKKMPV 352
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-175 8.47e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.64  E-value: 8.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  13 MIIGGLVMlaamtKSAQIPFSSWLPAAM-AAPTPVSALVHSSTLvtAGVYLLIR-----FNDVLMNWWMAQFLLLVSGLT 86
Cdd:PRK08376  225 LFIAGLAM-----KSGAVPVHMWLPDAYpAAPSSISAMLLVIKQ--AGLYALARvlfsiYGPAINLATVGWVIIILGCLT 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  87 MFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKL---------------AFFHLLTHALFKALLFMCAGSIIHN 151
Cdd:PRK08376  298 MFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLTAGAVIYE 377

                         170       180
                  ....*....|....*....|....
gi 1381392414 152 MkNSQDIRMMGSLSMSMPLTCSCF 175
Cdd:PRK08376  378 T-GTRNLNELGGLARTMPKTTIAF 400
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-169 3.69e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 54.57  E-value: 3.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDVLMNWWMA---QFLLLVSGLTM 87
Cdd:PRK07691  208 ITVVAILFLFVFATKAGLFPLYFWLPGSyYAPPIAIAALF-GALLTKVGVYAIARTFTLFFSHDTSfthYLILILALLTI 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  88 FMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSqDIRMMGSL 164
Cdd:PRK07691  287 IFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTesgMIGAIYYLIHDMIVKAALFLLIGIMIKITGTT-DLKKMGGL 365


                  ....*
gi 1381392414 165 SMSMP 169
Cdd:PRK07691  366 IKRYP 370
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-170 5.09e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 54.20  E-value: 5.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  13 MIIGGLVMLAAMTKSAQIPFSSWLPAAM-AAPTPVSAlVHSSTLVTAGVYLLIRFNDVLM-NWWMAQFLLLVSGLTMFMA 90
Cdd:PRK12665  209 TALFAVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFpGGGLDTLLMVVALLTMVVG 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  91 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMS 167
Cdd:PRK12665  288 ILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKA 366


                  ...
gi 1381392414 168 MPL 170
Cdd:PRK12665  367 SPL 369
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 20-170 5.70e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 5.70e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  20 MLAAMTKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNDVLM---NWWMAQFLLLVSGLTMFMAGLGAN 95
Cdd:TIGR01972 210 FIAFAVKVPLFPLHTWLPDAHVeAPTAGSVIL-AGVLLKMGTYGFLRFNLPLFpdaSLYFAPVLAALGVIAIIYGALIAL 288

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381392414  96 FEFDLKKIIALSTLSQLGL-MMSILSMGFYKL--AFFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:TIGR01972 289 AQTDIKRLIAYSSISHMGFvLLGIFSFNELGIsgAVFQMISHGLITAALFLLVG-VLYERAHTRDIAKYGGLANKMPV 365
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 25-171 2.20e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  25 TKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNDVLMNWWMAQF---LLLVSGL-TMFMAGLGANFEFD 99
Cdd:PRK06458  226 TKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAIGSDFpgrLLLIFGLlSVLVAAFFLLRQRD 304

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1381392414 100 LKKIIALSTLSQLGLMMSILSMGfYKLAFF----HLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMPLT 171
Cdd:PRK06458  305 IKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLT 378
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 18-150 3.14e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.06  E-value: 3.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNDVL-MNWWMAQFLLLVSGLTMFMAGLGAN 95
Cdd:PRK08676  211 FIFIGFLAKSGLVPFHTWLPAAYAkAPSVVSALL-SGTVLNIGIYGILRLSALLrQSGAAEQFSNVLIGLGIFSIAVAAF 289

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381392414  96 FEF---DLKKIIALSTLSQLGLMMSILSMGFYKLAF---FHLLTHALFKALLFMCAGsIIH 150
Cdd:PRK08676  290 SMLsqrNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILH 349
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 19-175 2.24e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 49.35  E-value: 2.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  19 VMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF-------NDVLMNWWMAQFLLLVSGLTMFMAG 91
Cdd:PRK12662  215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIvydvfkaNFVFTTLPFNNVFMILAALAIVFGS 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  92 LGANFEFDLKKIIALSTLSQLGLMMSILSMGFYK---LAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSM 168
Cdd:PRK12662  295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSM 373


                  ....*..
gi 1381392414 169 PLTCSCF 175
Cdd:PRK12662  374 PKITLAF 380
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 30-175 7.91e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.89  E-value: 7.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  30 IPFSSWLPAAMA-APTPVSALvHSSTLVTAGVYLLIRFNDVLMNWWMAQFLLLVSGLTMFM---AGLGANFEFDLKKIIA 105
Cdd:PRK05846  228 FPLHTWLPDAHVqAPTAGSVL-LAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIA 306

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1381392414 106 LSTLSQLGLMMsilsMGFYKL-------AFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMPLTCSCF 175
Cdd:PRK05846  307 YSSISHMGFVT----LGIFAGnqlgiqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-175 3.19e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 40.10  E-value: 3.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  12 MMIIGGLVMLAAMT-KSAQIPFSSWLP-AAMAAPTPVSALVhsSTLV-TAGVYLLIRFNDVLM---NWWMAQFLLLVSGL 85
Cdd:COG1007   201 LLLLGLVLVLAGLAfKLSAVPFHMWTPdVYEGAPTPVTAFL--ATAPkIAAFAALLRLLVEAFpglAADWQLLLAVLAVL 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  86 TMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMG 162
Cdd:COG1007   279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTplgVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLA 358

                         170
                  ....*....|...
gi 1381392414 163 SLSMSMPLTCSCF 175
Cdd:COG1007   359 GLARRSPLLALAM 371
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 18-148 7.68e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 39.00  E-value: 7.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPF--SSWLPAAMA-APTPVSAlVHSSTLVTAGVYLLIRFNDVLMNW---WMAQFLLLVSGLTMFMAG 91
Cdd:PRK06459  163 LASFGFIIKMGMMPFlvSEWLPIAHGnAPSNFSA-ILSATMTLMGVYGILKMTILTQTIpigYFGLTILAIGAFSILFGA 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  92 LGANFEFDLKKIIALSTLSQLGLMMSILSM------------GFYKLA-FFHLLTHALFKALLFMCAGSI 148
Cdd:PRK06459  242 LYAYVSENVKGLLAFSTIENNGAILVALGLymvtkqlitsieHFSLITvILYSFAHSVAKTGLFLSSGLQ 311
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 26-172 9.77e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.88  E-value: 9.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  26 KSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDVLM---NWWMAQFLLLVSGLTMFMAGLGANFEFDLK 101
Cdd:MTH00217  219 KIPKIPFHIWLPQAhVEAPVAGSVIL-AGVLLKLGGYGFIRFSWPLLpeaSEYFSPLIQTLSLLAIIYGSLTTCRQVDLK 297

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1381392414 102 KIIALSTLSQLGLM-MSILSMGFYKL--AFFHLLTHALFKALLFMcAGSIIHNMKNSQDIRMMGSLSMSMPLTC 172
Cdd:MTH00217  298 RIIAYSSVAHMGLVtLGIFSHTIQGLvaAIFLMLAHGLVSSALFI-AVTFLYERHHTRLIKYYRGMVITMPLFG 370
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
30-158 1.33e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.53  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  30 IPFSSWLP-AAMAAPTPVSALVhSSTLVTAGVYLLIRF--NDVLMNW-WMAQFLLLVSGLTMFMAGLGANFEFDLKKIIA 105
Cdd:PRK06473  222 VPFHTWLPdAHVEASTPVSVLL-AGVLLKLGTYGLLRFgvGLFPEAWvYLAPWLATWAVVSVLYGASCAIAQKDMKKMVA 300

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1381392414 106 LSTLSQLGLMM---------SILSmgfyklAFFHLLTHALFKALLFMCAGsIIHNMKNSQDI 158
Cdd:PRK06473  301 YSSIGHMGYILlaaaaatplSILA------AVFQMISHGLISALLFLLVG-VVYKKTGSRDV 355
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-173 1.67e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 38.17  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  18 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDvlmnwwMAQFLLLVSGLTMFMAGLGANFE 97
Cdd:PRK12664  149 LFMLGLLINCACFPASSWVVDAYPAASNFGIIVLSLFTTKVAALVLLLFFS------GEEILLFLGIITAIYGIIFASLE 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  98 FDLKKIIALSTLSQLGLMM-----SILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLTC 172
Cdd:PRK12664  223 QNIRRLLCYNVVGQMGLLIiaigfSGSSGVAIGILILQIVLSVVYQTLLFMVADSVINRTRKFNLNRVGGLFKMSLEAMC 302


                  .
gi 1381392414 173 S 173
Cdd:PRK12664  303 C 303
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
79-171 4.04e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 36.93  E-value: 4.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  79 LLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGsIIHNMKNS 155
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTplgIVAGIFHAINHVIYKSALFLGAG-IVSYRTKT 347

                          90
                  ....*....|....*.
gi 1381392414 156 QDIRMMGSLSMSMPLT 171
Cdd:PRK06277  348 SNLRKLGGLLPVMPVV 363
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 19-170 4.81e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 36.82  E-value: 4.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  19 VMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDVLMNWW---MAQFLLLVSGLTMFMAGLGAN 95
Cdd:MTH00226  236 IFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGaqnLAPAVIAMGIVGIVYGSFATC 315

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1381392414  96 FEFDLKKIIALSTLSQLGLM-MSILSMGFYKL--AFFHLLTHALFKALLFMCAgSIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:MTH00226  316 RQIDVKRLVAYSSVAHMGLVsITLVTHDIIGLtgSIFIMLAHGIVSSLLFILV-TILYDRHHTRLIKYYRGLSITMPI 392
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 19-170 7.19e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 36.19  E-value: 7.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381392414  19 VMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDVLM---NWWMAQFLLLVSGLTMFMAGLGA 94
Cdd:MTH00204  215 FFLSLAVKIPQIPFHIWLPQAhVEAPVAGSVIL-AGILLKLGGYGFLRFSWPLFpaaSEYFAPLIVMLSVIAVIYGSLTT 293

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1381392414  95 NFEFDLKKIIALSTLSQLGLM-MSILSMGFYKL--AFFHLLTHALFKALLFMcAGSIIHNMKNSQDIRMMGSLSMSMPL 170
Cdd:MTH00204  294 CRQVDFKRLIAYSSVAHMGLVpLGLFTHTIEGLvaAVFLMLAHGFVSSALFI-AVTFLYERHHTRLIKYYRGLTLTMPL 371
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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