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Conserved domains on  [gi|1399629|gb|AAB03305|]
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non-structural protein sigma 1s [Reovirus sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sigma_1s pfam02454
Sigma 1s protein; The reoviral gene S1 encodes for haemagglutinin (sigma 1 protein), an outer ...
 5-120 1.44e-51

Sigma 1s protein; The reoviral gene S1 encodes for haemagglutinin (sigma 1 protein), an outer capsid protein and a major factor in determining virus-host cell interactions. Sigma 1s is one of two translation products of the S1 gene.


:

Pssm-ID: 111360  Cd Length: 116  Bit Score: 158.54  E-value: 1.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1399629      5 CQKGLNQGSRRSRRRLKYTLILSSGSPRDSMMQTNESSLLSKVGMTWLHQSVMLNLQSPDWKALSEPSKQLSMDLIRVLP 84
Cdd:pfam02454   1 CQPGLNQGSRKSRNKLKYTLIQSSGSLRDSMMQTDESSLLSKAGQPLLHQLVRRNIQLPDSKALSEPYKQLSADLIRVYP 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1399629     85 SWVLEWDNLRQDLQSYALSTAISLREWILQNVTLDH 120
Cdd:pfam02454  81 SWVTESMLLNQELQSWILSRTISLREWILRNVTLDH 116
 
Name Accession Description Interval E-value
Sigma_1s pfam02454
Sigma 1s protein; The reoviral gene S1 encodes for haemagglutinin (sigma 1 protein), an outer ...
 5-120 1.44e-51

Sigma 1s protein; The reoviral gene S1 encodes for haemagglutinin (sigma 1 protein), an outer capsid protein and a major factor in determining virus-host cell interactions. Sigma 1s is one of two translation products of the S1 gene.


Pssm-ID: 111360  Cd Length: 116  Bit Score: 158.54  E-value: 1.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1399629      5 CQKGLNQGSRRSRRRLKYTLILSSGSPRDSMMQTNESSLLSKVGMTWLHQSVMLNLQSPDWKALSEPSKQLSMDLIRVLP 84
Cdd:pfam02454   1 CQPGLNQGSRKSRNKLKYTLIQSSGSLRDSMMQTDESSLLSKAGQPLLHQLVRRNIQLPDSKALSEPYKQLSADLIRVYP 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1399629     85 SWVLEWDNLRQDLQSYALSTAISLREWILQNVTLDH 120
Cdd:pfam02454  81 SWVTESMLLNQELQSWILSRTISLREWILRNVTLDH 116
 
Name Accession Description Interval E-value
Sigma_1s pfam02454
Sigma 1s protein; The reoviral gene S1 encodes for haemagglutinin (sigma 1 protein), an outer ...
 5-120 1.44e-51

Sigma 1s protein; The reoviral gene S1 encodes for haemagglutinin (sigma 1 protein), an outer capsid protein and a major factor in determining virus-host cell interactions. Sigma 1s is one of two translation products of the S1 gene.


Pssm-ID: 111360  Cd Length: 116  Bit Score: 158.54  E-value: 1.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1399629      5 CQKGLNQGSRRSRRRLKYTLILSSGSPRDSMMQTNESSLLSKVGMTWLHQSVMLNLQSPDWKALSEPSKQLSMDLIRVLP 84
Cdd:pfam02454   1 CQPGLNQGSRKSRNKLKYTLIQSSGSLRDSMMQTDESSLLSKAGQPLLHQLVRRNIQLPDSKALSEPYKQLSADLIRVYP 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1399629     85 SWVLEWDNLRQDLQSYALSTAISLREWILQNVTLDH 120
Cdd:pfam02454  81 SWVTESMLLNQELQSWILSRTISLREWILRNVTLDH 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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