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Conserved domains on  [gi|148276985|ref|NP_001087228|]
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trafficking protein particle complex subunit 13 isoform 2 [Mus musculus]

Protein Classification

TRAPPC13 family protein( domain architecture ID 10533054)

trafficking protein particle complex subunit 13 (TRAPPC13) family protein is a DUF974 domain-containing protein; similar to TRAPPC13, which is part of the multisubunit TRAPP (transport protein particle) complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF974 pfam06159
Protein of unknown function (DUF974); Family of uncharacterized eukaryotic proteins.
 65-298 1.19e-120

Protein of unknown function (DUF974); Family of uncharacterized eukaryotic proteins.


:

Pssm-ID: 461841  Cd Length: 244  Bit Score: 350.39  E-value: 1.19e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985   65 LTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQRLNL--SASNAAVAELKPDCCIDDVIHHEVKEIGTH 142
Cdd:pfam06159   1 LTLPQSFGSIYLGETFSCYLCVNNESTKVVRDVRIKAEMQTPSQRLELgeDGDGGPGVDLAPGESLQKIVSHELKELGNH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985  143 ILVCAVSYT---TQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDlSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMY 219
Cdd:pfam06159  81 VLACTVSYTeatAASGRVRTFRKFYKFVVQNPLSVRTKVYTPESP-SALRDRVFLEAQLENVTEGPIVLEKVKLEPSDGF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985  220 NVTELN---SVTQAGECISTFGSRGYLQPMDTRQYLYCLKPKKEFAE---KAGIIKGVTVIGKLDIVWKTNLGERGRLQT 293
Cdd:pfam06159 160 TATSLNgweSESGGSASSSIFSSKPVLQPGDIRQYLFLLEETPKPLEapgPLKTADGRTPLGKLDISWRSAMGERGRLQT 239


                  ....*
gi 148276985  294 SQLQR 298
Cdd:pfam06159 240 SQLQR 244
 
Name Accession Description Interval E-value
DUF974 pfam06159
Protein of unknown function (DUF974); Family of uncharacterized eukaryotic proteins.
 65-298 1.19e-120

Protein of unknown function (DUF974); Family of uncharacterized eukaryotic proteins.


Pssm-ID: 461841  Cd Length: 244  Bit Score: 350.39  E-value: 1.19e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985   65 LTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQRLNL--SASNAAVAELKPDCCIDDVIHHEVKEIGTH 142
Cdd:pfam06159   1 LTLPQSFGSIYLGETFSCYLCVNNESTKVVRDVRIKAEMQTPSQRLELgeDGDGGPGVDLAPGESLQKIVSHELKELGNH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985  143 ILVCAVSYT---TQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDlSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMY 219
Cdd:pfam06159  81 VLACTVSYTeatAASGRVRTFRKFYKFVVQNPLSVRTKVYTPESP-SALRDRVFLEAQLENVTEGPIVLEKVKLEPSDGF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985  220 NVTELN---SVTQAGECISTFGSRGYLQPMDTRQYLYCLKPKKEFAE---KAGIIKGVTVIGKLDIVWKTNLGERGRLQT 293
Cdd:pfam06159 160 TATSLNgweSESGGSASSSIFSSKPVLQPGDIRQYLFLLEETPKPLEapgPLKTADGRTPLGKLDISWRSAMGERGRLQT 239


                  ....*
gi 148276985  294 SQLQR 298
Cdd:pfam06159 240 SQLQR 244
 
Name Accession Description Interval E-value
DUF974 pfam06159
Protein of unknown function (DUF974); Family of uncharacterized eukaryotic proteins.
 65-298 1.19e-120

Protein of unknown function (DUF974); Family of uncharacterized eukaryotic proteins.


Pssm-ID: 461841  Cd Length: 244  Bit Score: 350.39  E-value: 1.19e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985   65 LTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQRLNL--SASNAAVAELKPDCCIDDVIHHEVKEIGTH 142
Cdd:pfam06159   1 LTLPQSFGSIYLGETFSCYLCVNNESTKVVRDVRIKAEMQTPSQRLELgeDGDGGPGVDLAPGESLQKIVSHELKELGNH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985  143 ILVCAVSYT---TQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDlSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMY 219
Cdd:pfam06159  81 VLACTVSYTeatAASGRVRTFRKFYKFVVQNPLSVRTKVYTPESP-SALRDRVFLEAQLENVTEGPIVLEKVKLEPSDGF 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148276985  220 NVTELN---SVTQAGECISTFGSRGYLQPMDTRQYLYCLKPKKEFAE---KAGIIKGVTVIGKLDIVWKTNLGERGRLQT 293
Cdd:pfam06159 160 TATSLNgweSESGGSASSSIFSSKPVLQPGDIRQYLFLLEETPKPLEapgPLKTADGRTPLGKLDISWRSAMGERGRLQT 239


                  ....*
gi 148276985  294 SQLQR 298
Cdd:pfam06159 240 SQLQR 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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