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Conserved domains on  [gi|148698159|gb|EDL30106|]
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regulator of chromosome condensation 1, isoform CRA_a, partial [Mus musculus]

Protein Classification

ATS1 family protein( domain architecture ID 11474102)

ATS1 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 40-397 6.01e-54

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 182.87  E-value: 6.01e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159  40 TEPGLVLTLGQGDVGQLGLGESVlERKKPALVPLLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSemV 119
Cdd:COG5184   14 KSDGTVWCWGDNSYGQLGDGTTT-DRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRT--T 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 120 PGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSfrDNNGVIGLLEPMKKSmVPVQVQLDA-PVVKVASGNDHLVMLTND 198
Cdd:COG5184   91 PVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGD--NSSGQLGDGTTTNRL-TPVQVDAGLsGVVAIAAGGYHTCALKSD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 199 GDLYTLGCGEQGQLGRVpelfanrggrqGLGRLLVPRCVllksRGTRGrvrFQDAFCGAYFTFAISREGHVYGFGLSNYH 278
Cdd:COG5184  168 GTVWCWGANSYGQLGDG-----------TTTDRPTPVQV----GGLSG---VVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 279 QLGTPGTGSCFIPQNLTSFKNstksWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGeGAEEKSIPTLISRLPVVSSV 358
Cdd:COG5184  230 QLGDGTTTDRATPVQVAGLTG----VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG-TTTDRSTPVKVPGLSGVVAV 304

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 148698159 359 ACGASVGYAVSKDGRVFAWGMGTNYQLGTGQDEDAWSPV 397
Cdd:COG5184  305 AAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 40-397 6.01e-54

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 182.87  E-value: 6.01e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159  40 TEPGLVLTLGQGDVGQLGLGESVlERKKPALVPLLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSemV 119
Cdd:COG5184   14 KSDGTVWCWGDNSYGQLGDGTTT-DRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRT--T 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 120 PGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSfrDNNGVIGLLEPMKKSmVPVQVQLDA-PVVKVASGNDHLVMLTND 198
Cdd:COG5184   91 PVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGD--NSSGQLGDGTTTNRL-TPVQVDAGLsGVVAIAAGGYHTCALKSD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 199 GDLYTLGCGEQGQLGRVpelfanrggrqGLGRLLVPRCVllksRGTRGrvrFQDAFCGAYFTFAISREGHVYGFGLSNYH 278
Cdd:COG5184  168 GTVWCWGANSYGQLGDG-----------TTTDRPTPVQV----GGLSG---VVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 279 QLGTPGTGSCFIPQNLTSFKNstksWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGeGAEEKSIPTLISRLPVVSSV 358
Cdd:COG5184  230 QLGDGTTTDRATPVQVAGLTG----VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG-TTTDRSTPVKVPGLSGVVAV 304

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 148698159 359 ACGASVGYAVSKDGRVFAWGMGTNYQLGTGQDEDAWSPV 397
Cdd:COG5184  305 AAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
371-422 1.18e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 59.45  E-value: 1.18e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148698159  371 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMTGkqLENRVVLTVSSGGQHTVLL 422
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEG--LSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 40-397 6.01e-54

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 182.87  E-value: 6.01e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159  40 TEPGLVLTLGQGDVGQLGLGESVlERKKPALVPLLQDVVQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSemV 119
Cdd:COG5184   14 KSDGTVWCWGDNSYGQLGDGTTT-DRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRT--T 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 120 PGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSfrDNNGVIGLLEPMKKSmVPVQVQLDA-PVVKVASGNDHLVMLTND 198
Cdd:COG5184   91 PVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGD--NSSGQLGDGTTTNRL-TPVQVDAGLsGVVAIAAGGYHTCALKSD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 199 GDLYTLGCGEQGQLGRVpelfanrggrqGLGRLLVPRCVllksRGTRGrvrFQDAFCGAYFTFAISREGHVYGFGLSNYH 278
Cdd:COG5184  168 GTVWCWGANSYGQLGDG-----------TTTDRPTPVQV----GGLSG---VVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 279 QLGTPGTGSCFIPQNLTSFKNstksWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGeGAEEKSIPTLISRLPVVSSV 358
Cdd:COG5184  230 QLGDGTTTDRATPVQVAGLTG----VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG-TTTDRSTPVKVPGLSGVVAV 304

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 148698159 359 ACGASVGYAVSKDGRVFAWGMGTNYQLGTGQDEDAWSPV 397
Cdd:COG5184  305 AAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 78-425 1.88e-52

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 179.02  E-value: 1.88e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159  78 VQAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSemVPGKVELQEKVVQVSAGDSHTAALTEDGRVFLWGSfrDN 157
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRS--TPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGN--NS 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 158 NGVIGLLEPmKKSMVPVQVQLDAPVVKVASGNDHLVMLTNDGDLYTLGCGEQGQLGRvpelfANRGGRqglgrlLVPRCV 237
Cdd:COG5184   77 YGQLGDGTT-TDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD-----GTTTNR------LTPVQV 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 238 LLksrgtrGRVRFQDAFCGAYFTFAISREGHVYGFGLSNYHQLGTPGTGSCFIPQNLTSFKNstksWVGFSGGQHHTVCM 317
Cdd:COG5184  145 DA------GLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSG----VVAVAAGGDHSCAL 214

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148698159 318 DSEGKAYSLGRAEYGRLGLGeGAEEKSIPTLISRLPVVSSVACGASVGYAVSKDGRVFAWGMGTNYQLGTGQDEDAWSPV 397
Cdd:COG5184  215 KSDGTVWCWGSNSSGQLGDG-TTTDRATPVQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPV 293

                        330       340
                 ....*....|....*....|....*...
gi 148698159 398 EMTGkqLENrvVLTVSSGGQHTVLLVKD 425
Cdd:COG5184  294 KVPG--LSG--VVAVAAGSSHTCALLTD 317
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
371-422 1.18e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 59.45  E-value: 1.18e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148698159  371 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMTGkqLENRVVLTVSSGGQHTVLL 422
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEG--LSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
93-142 1.11e-10

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 56.37  E-value: 1.11e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148698159   93 SGQVYSFGCNDEGALGRDTSVegSEMVPGKVEL--QEKVVQVSAGDSHTAAL 142
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTE--NVLVPQKVEGlsGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
266-317 1.09e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 50.98  E-value: 1.09e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148698159  266 EGHVYGFGLSNYHQLGTPGTGSCFIPQNLTSFKNstKSWVGFSGGQHHTVCM 317
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSG--NKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
43-90 6.89e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 45.97  E-value: 6.89e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 148698159   43 GLVLTLGQGDVGQLGLGeSVLERKKPALVPLLQD--VVQAEAGGMHTVCL 90
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLG-TTENVLVPQKVEGLSGnkVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
129-153 8.81e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 45.11  E-value: 8.81e-07
                          10        20
                  ....*....|....*....|....*
gi 148698159  129 VVQVSAGDSHTAALTEDGRVFLWGS 153
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGD 25
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
198-263 1.52e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.12  E-value: 1.52e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148698159  198 DGDLYTLGCGEQGQLGRVPElfANRggrqglgrlLVPRCVllksrGTRGRVRFQDAFCGAYFTFAI 263
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTT--ENV---------LVPQKV-----EGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
320-363 8.14e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.81  E-value: 8.14e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 148698159  320 EGKAYSLGRAEYGRLGLGEGaEEKSIPTLISRLPV--VSSVACGAS 363
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTT-ENVLVPQKVEGLSGnkVVQVACGGD 45
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
145-195 1.22e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.42  E-value: 1.22e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 148698159  145 DGRVFLWGsfRDNNGVIGlLEPMKKSMVPVQVQL--DAPVVKVASGNDHLVML 195
Cdd:pfam00415   1 DGRVYTWG--RNDYGQLG-LGTTENVLVPQKVEGlsGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
77-105 7.96e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 36.63  E-value: 7.96e-04
                          10        20
                  ....*....|....*....|....*....
gi 148698159   77 VVQAEAGGMHTVCLSQSGQVYSFGCNDEG 105
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYG 29
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
355-384 1.19e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 36.25  E-value: 1.19e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 148698159  355 VSSVACGASVGYAVSKDGRVFAWGMGTNYQ 384
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
255-279 2.47e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.09  E-value: 2.47e-03
                          10        20
                  ....*....|....*....|....*
gi 148698159  255 CGAYFTFAISREGHVYGFGLSNYHQ 279
Cdd:pfam13540   6 AGDNHTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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