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Conserved domains on  [gi|1498041962|gb|RMF23079|]
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cytochrome b559 subunit beta [Cyanobacteria bacterium J083]

Protein Classification

psbF family protein( domain architecture ID 10011816)

psbF family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbF PRK02561
cytochrome b559 subunit beta; Provisional
 1-44 3.18e-24

cytochrome b559 subunit beta; Provisional


:

Pssm-ID: 235051  Cd Length: 44  Bit Score: 83.93  E-value: 3.18e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1498041962  1 MTSNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:PRK02561   1 MAPNNANQPRSYPIFTVRWLAVHALGVPTVFFLGAIAAMQFIQR 44
 
Name Accession Description Interval E-value
psbF PRK02561
cytochrome b559 subunit beta; Provisional
 1-44 3.18e-24

cytochrome b559 subunit beta; Provisional


Pssm-ID: 235051  Cd Length: 44  Bit Score: 83.93  E-value: 3.18e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1498041962  1 MTSNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:PRK02561   1 MAPNNANQPRSYPIFTVRWLAVHALGVPTVFFLGAIAAMQFIQR 44
PsbF COG5721
Photosystem II cytochrome b559 beta chain, PsbF [Energy production and conversion]; ...
 1-44 6.62e-23

Photosystem II cytochrome b559 beta chain, PsbF [Energy production and conversion]; Photosystem II cytochrome b559 beta chain, PsbF is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444431  Cd Length: 45  Bit Score: 80.58  E-value: 6.62e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1498041962  1 MTSNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:COG5721    2 MTSSNPNQPRTYPIFTVRWLAVHALGVPTVFFLGAIAAMQFIQR 45
cyt_b559_beta TIGR01333
cytochrome b559, beta subunit; This model describes the beta subunit of cytochrome b559, about ...
 3-44 4.06e-16

cytochrome b559, beta subunit; This model describes the beta subunit of cytochrome b559, about 40 residues in length. It is homologous to the N-terminal half of the alpha subunit, a protein of about 83 residues. Cytochrome b559 is associated with photosystem II. [Energy metabolism, Photosynthesis]


Pssm-ID: 130400  Cd Length: 43  Bit Score: 63.49  E-value: 4.06e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1498041962  3 SNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:TIGR01333  2 AAKPLKPISYPIFTFRWLAIHALAIPTVFFFGAITAMQFIQR 43
Cytochrom_B559 pfam00283
Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;
6-34 3.51e-10

Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;


Pssm-ID: 425580  Cd Length: 29  Bit Score: 48.18  E-value: 3.51e-10
                         10        20
                 ....*....|....*....|....*....
gi 1498041962  6 PNEPVSYPIFTVRWLAVHTLAVPTVFFLG 34
Cdd:pfam00283  1 GERPFTYPIFTVRWLAIHALTVPTVFFLG 29
 
Name Accession Description Interval E-value
psbF PRK02561
cytochrome b559 subunit beta; Provisional
 1-44 3.18e-24

cytochrome b559 subunit beta; Provisional


Pssm-ID: 235051  Cd Length: 44  Bit Score: 83.93  E-value: 3.18e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1498041962  1 MTSNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:PRK02561   1 MAPNNANQPRSYPIFTVRWLAVHALGVPTVFFLGAIAAMQFIQR 44
PsbF COG5721
Photosystem II cytochrome b559 beta chain, PsbF [Energy production and conversion]; ...
 1-44 6.62e-23

Photosystem II cytochrome b559 beta chain, PsbF [Energy production and conversion]; Photosystem II cytochrome b559 beta chain, PsbF is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444431  Cd Length: 45  Bit Score: 80.58  E-value: 6.62e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1498041962  1 MTSNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:COG5721    2 MTSSNPNQPRTYPIFTVRWLAVHALGVPTVFFLGAIAAMQFIQR 45
psbF CHL00039
photosystem II protein VI
 11-44 1.94e-16

photosystem II protein VI


Pssm-ID: 176980  Cd Length: 39  Bit Score: 63.99  E-value: 1.94e-16
                         10        20        30
                 ....*....|....*....|....*....|....
gi 1498041962 11 SYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:CHL00039   6 TYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR 39
cyt_b559_beta TIGR01333
cytochrome b559, beta subunit; This model describes the beta subunit of cytochrome b559, about ...
 3-44 4.06e-16

cytochrome b559, beta subunit; This model describes the beta subunit of cytochrome b559, about 40 residues in length. It is homologous to the N-terminal half of the alpha subunit, a protein of about 83 residues. Cytochrome b559 is associated with photosystem II. [Energy metabolism, Photosynthesis]


Pssm-ID: 130400  Cd Length: 43  Bit Score: 63.49  E-value: 4.06e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1498041962  3 SNNPNEPVSYPIFTVRWLAVHTLAVPTVFFLGAIAAMQFIQR 44
Cdd:TIGR01333  2 AAKPLKPISYPIFTFRWLAIHALAIPTVFFFGAITAMQFIQR 43
Cytochrom_B559 pfam00283
Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;
6-34 3.51e-10

Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;


Pssm-ID: 425580  Cd Length: 29  Bit Score: 48.18  E-value: 3.51e-10
                         10        20
                 ....*....|....*....|....*....
gi 1498041962  6 PNEPVSYPIFTVRWLAVHTLAVPTVFFLG 34
Cdd:pfam00283  1 GERPFTYPIFTVRWLAIHALTVPTVFFLG 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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