NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1498193275|gb|RMG48842|]
View 

bacteriochlorophyll 4-vinyl reductase [Chloroflexi bacterium]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BchJ TIGR02019
bacteriochlorophyll 4-vinyl reductase; This model represents the component of ...
 9-196 1.45e-108

bacteriochlorophyll 4-vinyl reductase; This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


:

Pssm-ID: 131074  Cd Length: 188  Bit Score: 308.73  E-value: 1.45e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275   9 RIGPNSIIQTVAAARAQYGEEAVADWLRRTGRGHLLEAMPDHMLPESEFGDLIADLRFWLGVSAAADVLAQSGDLTAQYV 88
Cdd:TIGR02019   1 RIGPNSIIQTVPALEAAYGPGAADRALAAAGQGVLRPGPPSGMLPESQFSTLHRWLRDTLGETAAARLLRESGLATADYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  89 ATHRVPVPIRWLLPRLPVGLALRIFLPAIARHAWTFAGSGRFGYTLQPAWRLTLADSVEARGVRATEPVCAYYRAAFEGL 168
Cdd:TIGR02019  81 LANRIPPPAQRLIRALPAGLAARVLLTAIAKHAWTFAGSGKFRYVSGPPLSFEIARNPVVAGESSDTPVCHWYAAVFERL 160

                         170       180
                  ....*....|....*....|....*...
gi 1498193275 169 LRRVVCDRLRVHEVACRAMGTGRCEFAV 196
Cdd:TIGR02019 161 LRRLVWPHVAVRETACCAKGAPRCRFEL 188
 
Name Accession Description Interval E-value
BchJ TIGR02019
bacteriochlorophyll 4-vinyl reductase; This model represents the component of ...
 9-196 1.45e-108

bacteriochlorophyll 4-vinyl reductase; This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 131074  Cd Length: 188  Bit Score: 308.73  E-value: 1.45e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275   9 RIGPNSIIQTVAAARAQYGEEAVADWLRRTGRGHLLEAMPDHMLPESEFGDLIADLRFWLGVSAAADVLAQSGDLTAQYV 88
Cdd:TIGR02019   1 RIGPNSIIQTVPALEAAYGPGAADRALAAAGQGVLRPGPPSGMLPESQFSTLHRWLRDTLGETAAARLLRESGLATADYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  89 ATHRVPVPIRWLLPRLPVGLALRIFLPAIARHAWTFAGSGRFGYTLQPAWRLTLADSVEARGVRATEPVCAYYRAAFEGL 168
Cdd:TIGR02019  81 LANRIPPPAQRLIRALPAGLAARVLLTAIAKHAWTFAGSGKFRYVSGPPLSFEIARNPVVAGESSDTPVCHWYAAVFERL 160

                         170       180
                  ....*....|....*....|....*...
gi 1498193275 169 LRRVVCDRLRVHEVACRAMGTGRCEFAV 196
Cdd:TIGR02019 161 LRRLVWPHVAVRETACCAKGAPRCRFEL 188
V4R pfam02830
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ...
 138-198 3.17e-15

V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.


Pssm-ID: 427011  Cd Length: 62  Bit Score: 66.93  E-value: 3.17e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498193275 138 WRLTLADSVEARG-VRATEPVCAYYRAAFEGLLRRVVCDRLRVHEVACRAMGTGRCEFAVEL 198
Cdd:pfam02830   1 LVISIEESPECAGlPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
COG1719 COG1719
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
51-198 1.90e-14

Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];


Pssm-ID: 441325 [Multi-domain]  Cd Length: 137  Bit Score: 67.03  E-value: 1.90e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  51 MLPESEF-GDLIADLRFWLGVsAAADVLAQSGDLTAQYVAtHRVPVPIRwllprlpvglalriFLPAIArHAWTFAGSGR 129
Cdd:COG1719     1 MAAEEDFlVALFRALEEELGI-AAARVLYRAGKRIGKELA-ERFKEEAD--------------LLEALK-EFWKLSGWGI 63

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498193275 130 FGYTLQPAWRL--TLADSVEARGVR-ATEPVCAYYRAAFEGLLRRVVCDRLRVHEVACRAMGTGRCEFAVEL 198
Cdd:COG1719    64 LEIDELSEGPLviTVEDSPECRGLPnSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRP 135
V4R smart00989
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ...
 139-197 5.18e-10

The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;


Pssm-ID: 198057  Cd Length: 61  Bit Score: 53.05  E-value: 5.18e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  139 RLTLADSVEARG-VRATEPVCAYYRAAFEGLLRRVVCDRLRVHEVACRAMGTGRCEFAVE 197
Cdd:smart00989   1 VISVEDCPECAGlGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVK 60
 
Name Accession Description Interval E-value
BchJ TIGR02019
bacteriochlorophyll 4-vinyl reductase; This model represents the component of ...
 9-196 1.45e-108

bacteriochlorophyll 4-vinyl reductase; This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 131074  Cd Length: 188  Bit Score: 308.73  E-value: 1.45e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275   9 RIGPNSIIQTVAAARAQYGEEAVADWLRRTGRGHLLEAMPDHMLPESEFGDLIADLRFWLGVSAAADVLAQSGDLTAQYV 88
Cdd:TIGR02019   1 RIGPNSIIQTVPALEAAYGPGAADRALAAAGQGVLRPGPPSGMLPESQFSTLHRWLRDTLGETAAARLLRESGLATADYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  89 ATHRVPVPIRWLLPRLPVGLALRIFLPAIARHAWTFAGSGRFGYTLQPAWRLTLADSVEARGVRATEPVCAYYRAAFEGL 168
Cdd:TIGR02019  81 LANRIPPPAQRLIRALPAGLAARVLLTAIAKHAWTFAGSGKFRYVSGPPLSFEIARNPVVAGESSDTPVCHWYAAVFERL 160

                         170       180
                  ....*....|....*....|....*...
gi 1498193275 169 LRRVVCDRLRVHEVACRAMGTGRCEFAV 196
Cdd:TIGR02019 161 LRRLVWPHVAVRETACCAKGAPRCRFEL 188
V4R pfam02830
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ...
 138-198 3.17e-15

V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.


Pssm-ID: 427011  Cd Length: 62  Bit Score: 66.93  E-value: 3.17e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498193275 138 WRLTLADSVEARG-VRATEPVCAYYRAAFEGLLRRVVCDRLRVHEVACRAMGTGRCEFAVEL 198
Cdd:pfam02830   1 LVISIEESPECAGlPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
COG1719 COG1719
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
51-198 1.90e-14

Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];


Pssm-ID: 441325 [Multi-domain]  Cd Length: 137  Bit Score: 67.03  E-value: 1.90e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  51 MLPESEF-GDLIADLRFWLGVsAAADVLAQSGDLTAQYVAtHRVPVPIRwllprlpvglalriFLPAIArHAWTFAGSGR 129
Cdd:COG1719     1 MAAEEDFlVALFRALEEELGI-AAARVLYRAGKRIGKELA-ERFKEEAD--------------LLEALK-EFWKLSGWGI 63

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498193275 130 FGYTLQPAWRL--TLADSVEARGVR-ATEPVCAYYRAAFEGLLRRVVCDRLRVHEVACRAMGTGRCEFAVEL 198
Cdd:COG1719    64 LEIDELSEGPLviTVEDSPECRGLPnSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRP 135
V4R smart00989
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ...
 139-197 5.18e-10

The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;


Pssm-ID: 198057  Cd Length: 61  Bit Score: 53.05  E-value: 5.18e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498193275  139 RLTLADSVEARG-VRATEPVCAYYRAAFEGLLRRVVCDRLRVHEVACRAMGTGRCEFAVE 197
Cdd:smart00989   1 VISVEDCPECAGlGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVK 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH