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Conserved domains on  [gi|1585693440|ref|XP_028120533|]
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EPIDERMAL PATTERNING FACTOR-like protein 9 isoform X2 [Camellia sinensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
stomagen-like super family cl25585
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
 1-112 3.61e-42

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


The actual alignment was detected with superfamily member PLN03207:

Pssm-ID: 452405  Cd Length: 113  Bit Score: 134.21  E-value: 3.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585693440   1 MANTRLLNNLLLLFFTIICAAHVIQGSRTQVLFSYirraHQSSTSEREFLMQDSIKQWMNRNSRRAMIGSTAPTCTYNEC 80
Cdd:PLN03207    6 MTATTRCLTLFFLLFFLLLGAYVIQGSRNQSILPY----DQSISYPHQETVKLLNGGHLSKSSRRLMIGSTAPTCTYNEC 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1585693440  81 RGCKYKCSAEQVPVEGNDPINSAYHYKCVCHR 112
Cdd:PLN03207   82 RGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
 
Name Accession Description Interval E-value
PLN03207 PLN03207
stomagen; Provisional
 1-112 3.61e-42

stomagen; Provisional


Pssm-ID: 215632  Cd Length: 113  Bit Score: 134.21  E-value: 3.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585693440   1 MANTRLLNNLLLLFFTIICAAHVIQGSRTQVLFSYirraHQSSTSEREFLMQDSIKQWMNRNSRRAMIGSTAPTCTYNEC 80
Cdd:PLN03207    6 MTATTRCLTLFFLLFFLLLGAYVIQGSRNQSILPY----DQSISYPHQETVKLLNGGHLSKSSRRLMIGSTAPTCTYNEC 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1585693440  81 RGCKYKCSAEQVPVEGNDPINSAYHYKCVCHR 112
Cdd:PLN03207   82 RGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
 62-111 5.93e-28

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


Pssm-ID: 407095  Cd Length: 50  Bit Score: 96.45  E-value: 5.93e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1585693440  62 NSRRAMIGSTAPTCTYNECRGCKYKCSAEQVPVEGNDPINSAYHYKCVCH 111
Cdd:pfam16851   1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
stomagen-like cd22743
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
 68-112 3.00e-14

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


Pssm-ID: 439359  Cd Length: 45  Bit Score: 61.70  E-value: 3.00e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1585693440  68 IGSTAPTCTYNECRGCKYKCSAEQVPVEGNDPINSAYHYKCVCHR 112
Cdd:cd22743     1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
 
Name Accession Description Interval E-value
PLN03207 PLN03207
stomagen; Provisional
 1-112 3.61e-42

stomagen; Provisional


Pssm-ID: 215632  Cd Length: 113  Bit Score: 134.21  E-value: 3.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1585693440   1 MANTRLLNNLLLLFFTIICAAHVIQGSRTQVLFSYirraHQSSTSEREFLMQDSIKQWMNRNSRRAMIGSTAPTCTYNEC 80
Cdd:PLN03207    6 MTATTRCLTLFFLLFFLLLGAYVIQGSRNQSILPY----DQSISYPHQETVKLLNGGHLSKSSRRLMIGSTAPTCTYNEC 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1585693440  81 RGCKYKCSAEQVPVEGNDPINSAYHYKCVCHR 112
Cdd:PLN03207   82 RGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
 62-111 5.93e-28

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


Pssm-ID: 407095  Cd Length: 50  Bit Score: 96.45  E-value: 5.93e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1585693440  62 NSRRAMIGSTAPTCTYNECRGCKYKCSAEQVPVEGNDPINSAYHYKCVCH 111
Cdd:pfam16851   1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
stomagen-like cd22743
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
 68-112 3.00e-14

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


Pssm-ID: 439359  Cd Length: 45  Bit Score: 61.70  E-value: 3.00e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1585693440  68 IGSTAPTCTYNECRGCKYKCSAEQVPVEGNDPINSAYHYKCVCHR 112
Cdd:cd22743     1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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