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Conserved domains on  [gi|1591473816|gb|QBM10146|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Piranga erythrocephala]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475907)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 734.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPL 160
Cdd:MTH00124   81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 161 LIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGG 240
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 241 YGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHG 320
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 321 LTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAI 400
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 401 LLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISGI 457
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 734.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPL 160
Cdd:MTH00124   81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 161 LIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGG 240
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 241 YGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHG 320
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 321 LTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAI 400
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 401 LLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISGI 457
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-397 8.54e-73

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 231.05  E-value: 8.54e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 112 ASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 192 SLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 272 TSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLA-NTNYERTHSRILLLTRGLQP 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1591473816 351 LLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTG 397
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAG 287
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
57-449 1.59e-69

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 228.81  E-value: 1.59e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQNHLEQeptiRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRW 136
Cdd:COG1008    79 GVDGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIW 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 137 GSqPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSsLIAGLALLLAFMVKAPLYGLHLWL 216
Cdd:COG1008   155 GG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPFHTWL 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 217 PKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP-TSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMG 295
Cdd:COG1008   233 PDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 296 LVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNL 375
Cdd:COG1008   313 FVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGF 392
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1591473816 376 MAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMAlhmiPMALLIL 449
Cdd:COG1008   393 VGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLA----PLAALIL 462
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
57-454 5.20e-58

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 198.24  E-value: 5.20e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQnhleqePTIRKRV--FTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILIT 134
Cdd:TIGR01972  74 GVDGISLLLVLLTALLTLLAILASW------ESIQKRVkeFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIG 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 135 RWGSqPERLNAGIYLLFYTLASSLPLLIAILHLHNQIG--TLYLPMLKLSHPTLNSSWssliAGLALLLAFMVKAPLYGL 212
Cdd:TIGR01972 148 VWGG-PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtFDLLELLNLPLPFGVQTW----LFLAFFIAFAVKVPLFPL 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 213 HLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP-TSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSV 291
Cdd:TIGR01972 223 HTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 292 SHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPP 371
Cdd:TIGR01972 303 SHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPG 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 372 TTNLMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALP-SHITSIQNSSTREHLLMALHMIPMALLILK 450
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnPEVAEFPDLNGREIAVLAPLVVLILFLGLY 462

                  ....
gi 1591473816 451 PELI 454
Cdd:TIGR01972 463 PNPL 466
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 734.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPL 160
Cdd:MTH00124   81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 161 LIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGG 240
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 241 YGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHG 320
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 321 LTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAI 400
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 401 LLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISGI 457
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 598.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPL 160
Cdd:MTH00068   81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 161 LIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGG 240
Cdd:MTH00068  161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 241 YGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHG 320
Cdd:MTH00068  241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 321 LTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAI 400
Cdd:MTH00068  321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 401 LLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISGI 457
Cdd:MTH00068  401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGM 457
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 594.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 161 LIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 241 YGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 321 LTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAI 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 401 LLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISGI 457
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-456 1.44e-176

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 502.56  E-value: 1.44e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLT-PTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMA 79
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLKnLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  80 SQNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLP 159
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 160 LLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLG 239
Cdd:MTH00127  161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 240 GYGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISH 319
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 320 GLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAA 399
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 400 ILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISG 456
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 1.68e-163

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 468.65  E-value: 1.68e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   3 KIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWL-TPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMASQ 81
Cdd:MTH00206    1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFkWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  82 NHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLL 161
Cdd:MTH00206   81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 162 IAILHLHNQIGTLYLPMLKLSHPTlnsSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGY 241
Cdd:MTH00206  161 IALLFLQNSLGSLSLYILYFSKLT---TWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 242 GIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGL 321
Cdd:MTH00206  238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 322 TSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAIL 401
Cdd:MTH00206  318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1591473816 402 LTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELI 454
Cdd:MTH00206  398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 2.28e-145

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 422.85  E-value: 2.28e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWT-AIDQISSPLLVLSCWLLPLMIMA 79
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLNNHWSSSWHNLSLSlATDSLSSPLIILSCWLAPLSLLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  80 SQNHLEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLP 159
Cdd:MTH00044   81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 160 LLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLG 239
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 240 GYGIMR-ITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMIS 318
Cdd:MTH00044  241 GYGLIRlINLFSLPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 319 HGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGA 398
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 399 AILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELIS 455
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-454 1.81e-118

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 353.69  E-value: 1.81e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSprKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLtpWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLK--NSWWLVQSLLFLLSFLFMLLFSLSFYFSNISY--FFGLDLLSFGLILLSFWICMLMILSS 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPTirKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPL 160
Cdd:MTH00163   77 ESVYKKNNY--SNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 161 LIAILHLHNQIGTLYLPMLKlshptlNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGG 240
Cdd:MTH00163  155 LVGIFYLYNNSGSLSFFLLN------FFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 241 YGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHG 320
Cdd:MTH00163  229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 321 LTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAI 400
Cdd:MTH00163  309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1591473816 401 LLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELI 454
Cdd:MTH00163  389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
59-457 3.73e-113

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 339.12  E-value: 3.73e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  59 DQISSPLLVLSCWLLPLMIMASQNhlEQEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGS 138
Cdd:MTH00150   23 DSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLLILGWGY 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 139 QPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSsliAGLALLLAFMVKAPLYGLHLWLPK 218
Cdd:MTH00150  101 QPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMGL---WGLLVFLAFLVKLPMYPFHLWLPK 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 219 AHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVV 298
Cdd:MTH00150  178 AHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVL 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 299 AATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAE 378
Cdd:MTH00150  258 AGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSE 337
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1591473816 379 LTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELISGI 457
Cdd:MTH00150  338 IMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFMW 416
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-455 2.41e-111

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 335.94  E-value: 2.41e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSpRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIK-YPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QN--HLEQEPtirkRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSL 158
Cdd:MTH00014   80 FKifQNNKAP----KTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 159 PLLIAILHLHNQIGTLYLPMLKLSHPTLnssWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKL 238
Cdd:MTH00014  156 PLLMSILLIFYTNNSLSMLMSSMEPPSI---YLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKL 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 239 GGYGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMIS 318
Cdd:MTH00014  233 GGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIA 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 319 HGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGA 398
Cdd:MTH00014  313 HGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAI 392
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 399 AILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELIS 455
Cdd:MTH00014  393 TSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLIT 449
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
59-454 1.69e-106

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 323.47  E-value: 1.69e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  59 DQISSPLLVLSCWLLPLMIMASQNHLEQEPTirKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGS 138
Cdd:MTH00205   56 DSLSLPLIMLSFWISLLMVLASYKVFKSNKN--SKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGY 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 139 QPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLylpMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPK 218
Cdd:MTH00205  134 QPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSL---SMFFNFPLNFSDFYLFLYWIFLMLAFLVKLPMYFVHLWLPK 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 219 AHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVV 298
Cdd:MTH00205  211 AHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMV 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 299 AATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAE 378
Cdd:MTH00205  291 VGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASE 370
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1591473816 379 LTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELI 454
Cdd:MTH00205  371 ILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-397 8.54e-73

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 231.05  E-value: 8.54e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 112 ASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 192 SLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 272 TSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLA-NTNYERTHSRILLLTRGLQP 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1591473816 351 LLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTG 397
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAG 287
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
57-449 1.59e-69

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 228.81  E-value: 1.59e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQNHLEQeptiRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRW 136
Cdd:COG1008    79 GVDGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIW 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 137 GSqPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSsLIAGLALLLAFMVKAPLYGLHLWL 216
Cdd:COG1008   155 GG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPFHTWL 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 217 PKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP-TSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMG 295
Cdd:COG1008   233 PDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPeASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 296 LVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNL 375
Cdd:COG1008   313 FVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGF 392
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1591473816 376 MAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMAlhmiPMALLIL 449
Cdd:COG1008   393 VGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLA----PLAALIL 462
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
57-449 4.30e-61

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 206.98  E-value: 4.30e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQNhleqepTIRKRV--FTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILIT 134
Cdd:PRK05846   79 GVDGISLLLVVLTALLTPLAVLASWE------EIKKRVkfYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 135 RWGSqPERLNAGIYLLFYTLASSLPLLIAILHL----HNQIGT---LYLPMLKLSHPTLNSSWssliagLALLLAFMVKA 207
Cdd:PRK05846  153 VWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTfdiADLLNLPLPPGVQYWLF------LAFFIAFAVKM 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 208 PLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP-TSNNLHYPFITLALWGALMTSAICLRQIDLKSLI 286
Cdd:PRK05846  226 PMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLI 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 287 AYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTN 366
Cdd:PRK05846  306 AYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMAS 385
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 367 MALPPTTNLMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMAlhmiPMAL 446
Cdd:PRK05846  386 LGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILL----PLVA 461

                  ...
gi 1591473816 447 LIL 449
Cdd:PRK05846  462 LLL 464
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
14-454 1.16e-60

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 205.30  E-value: 1.16e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  14 LAILSPRKYLWTNTTLYSLLIATISLQWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMASQNHLeqepTIRKR 93
Cdd:MTH00204   37 LAILFSTLVLWGAFDGEGQFQFINLIEWIISPTLNFQWGPLVFAVDGVSLFFILLTTLLIPICILISWKSI----KFLFK 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  94 VFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGT 173
Cdd:MTH00204  113 EFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGT 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 174 L-YLPMLKLSHPTLNSSWssliAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP 252
Cdd:MTH00204  193 TdYQILLNIKLPLSIQKW----LLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFP 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 253 TSNNLHYPFITL-----ALWGALMTSaiclRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLF 327
Cdd:MTH00204  269 AASEYFAPLIVMlsviaVIYGSLTTC----RQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALF 344
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 328 CLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAILLTASYT 407
Cdd:MTH00204  345 IAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYS 424
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 1591473816 408 LYMLMMTQRGALPSHITSIQNSSTREHLLMALHMIPMALLILKPELI 454
Cdd:MTH00204  425 LYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
57-454 5.20e-58

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 198.24  E-value: 5.20e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQnhleqePTIRKRV--FTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILIT 134
Cdd:TIGR01972  74 GVDGISLLLVLLTALLTLLAILASW------ESIQKRVkeFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIG 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 135 RWGSqPERLNAGIYLLFYTLASSLPLLIAILHLHNQIG--TLYLPMLKLSHPTLNSSWssliAGLALLLAFMVKAPLYGL 212
Cdd:TIGR01972 148 VWGG-PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtFDLLELLNLPLPFGVQTW----LFLAFFIAFAVKVPLFPL 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 213 HLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP-TSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSV 291
Cdd:TIGR01972 223 HTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 292 SHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPP 371
Cdd:TIGR01972 303 SHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPG 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 372 TTNLMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALP-SHITSIQNSSTREHLLMALHMIPMALLILK 450
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnPEVAEFPDLNGREIAVLAPLVVLILFLGLY 462

                  ....
gi 1591473816 451 PELI 454
Cdd:TIGR01972 463 PNPL 466
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
57-448 1.55e-55

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 192.44  E-value: 1.55e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQNHLEqeptIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRW 136
Cdd:MTH00226   99 AVDGISIYFIILTGFIVPCSILISWHSVK----YLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIW 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 137 GSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTL-YLPMLKLSHptLNSSWSSLIAGLALLLAFMVKAPLYGLHLW 215
Cdd:MTH00226  175 GSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTdYLTLASCSH--VVSEQTQKWIFLGIFLAMAVKIPIFPFHIW 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 216 LPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPT-SNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHM 294
Cdd:MTH00226  253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 295 GLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTN 374
Cdd:MTH00226  333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1591473816 375 LMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSIQNSSTREHLLMAlHMIPMALLI 448
Cdd:MTH00226  413 FIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITA-SMVFFAFLI 485
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
57-410 9.07e-53

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 184.49  E-value: 9.07e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQNHLEqeptIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRW 136
Cdd:MTH00217   77 AVDGISIFFLILTALLTPICILISWNSIK----FLIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIW 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 137 GSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTL-YLPMLKLShptLNSSWSsLIAGLALLLAFMVKAPLYGLHLW 215
Cdd:MTH00217  153 GSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTdYQALCCLK---IEKELQ-YFIFLGFFLSLAIKIPKIPFHIW 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 216 LPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFI-TLALWGALMTSAICLRQIDLKSLIAYSSVSHM 294
Cdd:MTH00217  229 LPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIqTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHM 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 295 GLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTN 374
Cdd:MTH00217  309 GLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCN 388
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1591473816 375 LMAELTIVIALFNWSAFTIILTGAAILLTASYTLYM 410
Cdd:MTH00217  389 FVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
104-412 8.70e-47

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 166.62  E-value: 8.70e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 104 LFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHlhnqigtlYLPMLKLSH 183
Cdd:MTH00094   73 LICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLK--------NFFFFSLCY 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 184 PTLNSSWSSLIAGLALllaFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLhypFIT 263
Cdd:MTH00094  145 FDFFLSWEMFFILSLS---FMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNF---WII 218
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 264 LALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILL 343
Cdd:MTH00094  219 FSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIY 298
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1591473816 344 LTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLM 412
Cdd:MTH00094  299 FMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIV 367
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
48-411 6.84e-39

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 147.10  E-value: 6.84e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  48 PNKGLTPWTAIDQISSPLLVLSCWLLPLMIMASQNhLEQEPtirkRVFTTTVILAQLFILLAFSASELMLFYIAFEATLI 127
Cdd:PRK12561   47 PQIGLEWSLGVDGLSMPLVLLSGLITTLSIFASWK-VTRKP----RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELV 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 128 PTLILITRWGSQpERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLnSSWSSLIAGLALLLAFMVKA 207
Cdd:PRK12561  122 PVYLLISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSY-PLALELLLYAGFLIAFGVKL 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 208 PLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYP-FITLA----LWGALMTSAiclrQIDL 282
Cdd:PRK12561  200 PIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGvvniIYGALNAFA----QDNV 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 283 KSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLA 362
Cdd:PRK12561  276 KRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTAS 355
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1591473816 363 NLTNMALPPTTNLMAELTIVIALFNWSAF-------TIILTGAAILLTASYTLYML 411
Cdd:PRK12561  356 SMASLALPGMSGFVSELTVFLGITSSDVYsstfrtiTILLAAVGLILTPIYLLSML 411
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
57-412 4.83e-37

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 140.67  E-value: 4.83e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  57 AIDQISSPLLVLSCWLLPLMIMASQNHLEQEPtiRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITrW 136
Cdd:COG0651    73 VADRLSALFLLLTALVALAVLLYSIGYMRHER--RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVA-L 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 137 GSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAGLALLLaFMVKAPLYGLHLWL 216
Cdd:COG0651   150 GGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLLAAFALLLVG-FGIKAALFPLHFWL 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 217 PKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPT--SNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHM 294
Cdd:COG0651   229 PDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGAdpALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQI 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 295 GLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTN 374
Cdd:COG0651   309 GYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSG 388
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1591473816 375 LMAELTIVIALFNWSAFTIIltgAAILLTASYTLYMLM 412
Cdd:COG0651   389 FVSKWLLLQAALEAGAWLLA---AVLLLSSLLTLAYFV 423
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
45-457 6.36e-33

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 130.60  E-value: 6.36e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  45 TYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMASQnhleqEPTIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEA 124
Cdd:PRK02546   72 SWLPQLGLTWSVGADGLSMPLILLTGFITTLAVLAAW-----PVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWEL 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 125 TLIPTLILITRWGSQpERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSsLIAGLALLLAFM 204
Cdd:PRK02546  147 ELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGFQ-LLCYAGLLIAYG 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 205 VKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYP-FITLALWGALMTSAICLRQIDLK 283
Cdd:PRK02546  225 VKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLK 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 284 SLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLAN 363
Cdd:PRK02546  305 RKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACS 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 364 LTNMALPPTTNLMAELTIVIALFNWSAFT-------IILTGAAILLTASYTLYMLMMTQRGALPSHITSIQN---SSTRE 433
Cdd:PRK02546  385 LASLALPGMSGFVAELMVFVGFATSDAYTlpfrvvvVFLAAVGVILTPIYLLSMLREIFFGPENKELVSHEKlvdAEPRE 464
                         410       420
                  ....*....|....*....|....
gi 1591473816 434 HLLMALHMIPMALLILKPELISGI 457
Cdd:PRK02546  465 VFIIACLLVPIIGIGLYPKLVTQS 488
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
36-426 2.94e-30

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 122.89  E-value: 2.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  36 TISLQWLTPTyypnkGLTPWTAIDQISSPLLVLSCWLLPLMIMASQNHLEqeptiRKRVFTTTVILAQLFILLAFSASEL 115
Cdd:PRK06473   60 TEFIPWIDSL-----GLSYHLGVDGLSLPLLVLNSLLTLIAIYSSDESIQ-----RPRFYYSLLLLLNAGVSGAFLAQDL 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 116 MLFYIAFEATLIPTLILITRWGSQpERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSwSSLIA 195
Cdd:PRK06473  130 LLFFLFYELELIPLYLLIAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLL 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 196 GLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFI-TLALWGALMTSA 274
Cdd:PRK06473  208 LAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGAS 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 275 ICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGL---QPL 351
Cdd:PRK06473  288 CAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERG 367
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1591473816 352 LPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSHITSI 426
Cdd:PRK06473  368 LPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNL 442
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-422 2.51e-29

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 120.20  E-value: 2.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  51 GLTPWTAIDQISSPLLVLSCWLLPLMIMASQNHLEqeptiRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTL 130
Cdd:PRK07363   70 GLSYSLGVDGLSLPLLVLNSLLTWIAIYSIGENTE-----RPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFY 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 131 ILITRWGSQpERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSwSSLIAGLALLLAFMVKAPLY 210
Cdd:PRK07363  145 LLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLV 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 211 GLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPfiTLALWGA---LMTSAICLRQIDLKSLIA 287
Cdd:PRK07363  223 PLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTisvIYGALSAIAQKDIKRMVA 300
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 288 YSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGL-QPL--LPLMATWWLLANL 364
Cdd:PRK07363  301 YSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLmNPIrgLPLTSALLVLAGM 380
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1591473816 365 TNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAILLTASYTLYMLMMTQRGALPSH 422
Cdd:PRK07363  381 ASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNK 438
ndhD CHL00011
NADH dehydrogenase subunit 4
110-411 6.41e-27

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 113.12  E-value: 6.41e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 110 FSASELMLFYIAFEATLIPTLILITRWGSQpERLNAGIYLLFYTLASSLPLLIAILHLhnqigTLYLPmlklSHPTLNSS 189
Cdd:CHL00011  129 FSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGM-----GLYGS----NEPTLNFE 198
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 190 WSS---------LIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYP 260
Cdd:CHL00011  199 TLAnqsypvaleILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSP 278
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 261 FitLALWGALM---TSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERT 337
Cdd:CHL00011  279 W--LVIVGAIQiiyAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI 356
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 338 HSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIA-------LFNWSAFTIILTGAAILLTASYTLYM 410
Cdd:CHL00011  357 RLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGiitsqkyLLMPKILITFVMAIGMILTPIYLLSM 436

                  .
gi 1591473816 411 L 411
Cdd:CHL00011  437 L 437
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
58-449 9.36e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 103.90  E-value: 9.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  58 IDQISSPLLVLSCWLLPLMIMASQNHLEQEPTIRkrVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWG 137
Cdd:PRK12667   80 VDLLGALLGLLTALVMFLILIYSYWYLEHESGPE--WYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYR 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 138 SQPERLNAGI-YLLFYTLASSLpLLIAILHLHNQIGTLYLPMLKL----------SHPTLNSSWSSLIAGLALLLAFMVK 206
Cdd:PRK12667  158 DRGDAVEAAIkYALIGAVGTTL-YFLALAFLYATFGTLNMADLSAkirglsfpltGGLAGNPPLALGVALALALWAFTIK 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 207 APLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRI-------TILVNPTSNNLHYPFITLALWGALMTSAICLRQ 279
Cdd:PRK12667  237 AAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQ 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 280 IDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWW 359
Cdd:PRK12667  317 KDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAF 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 360 LLANLTNMALPPTTNLMAELTIVIALFNWSAFT---IILTGAAILLTASYTLYMLMMTQRGalpshiTSIQNSSTREHLL 436
Cdd:PRK12667  397 LIGALSLVGIPPLNGFFSKLLLFNALLESGFYLpalVLLIASAISLVGYFRAWYSLFFGKP------KSGEEVEHKESPS 470
                         410
                  ....*....|...
gi 1591473816 437 MALHMIPMALLIL 449
Cdd:PRK12667  471 MSVVILVLALAVL 483
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 1.08e-23

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 95.28  E-value: 1.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   1 MLKIIAPTAMLLPLAILSPRKYLWTNTTLYSLLIATISLQWLT-PTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNnPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 1591473816  80 SQNHLEQEPTIRKRVFTTTVILAQLFILLA 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
109-406 7.38e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 88.78  E-value: 7.38e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 109 AFSASELMLFYIAFEATLIPTLILITRWGSqPERLNAG-IYLLFYTLASSLpLLIAILHLHNQIGTLYLPMLK---LSHP 184
Cdd:PRK08375  122 ALLTADLFNLFVFLEIMSLSSYALVAMGGD-RRALAAArKYLIVGLIGSTF-LLIGVGLLYGVTGTLNMADLAgalAENP 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 185 TLNsswsslIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILV----NPTSNNLHYP 260
Cdd:PRK08375  200 TVV------TAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWL 273
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 261 FITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSR 340
Cdd:PRK08375  274 LAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTR 353
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1591473816 341 ILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALF---NWSAFTIILtgAAILLTASY 406
Cdd:PRK08375  354 RLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVLL--ASSLLALLY 420
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-449 1.37e-14

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 75.74  E-value: 1.37e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 206 KAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILV--NPTSNNLHYPFITLALWGALMTSAICLRQIDLK 283
Cdd:PRK06458  227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIK 306
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 284 SLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLAN 363
Cdd:PRK06458  307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 364 LTNMALPPTTNLMAELTIVIALFN---WSAFTIILTGAAILLTAsytlyMLMMTQRGALPSHitsiqNSSTREHLLMALH 440
Cdd:PRK06458  387 LAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAA-----LVRRVAGMVFGEP-----PEAVNRGDLGWLT 456

                  ....*....
gi 1591473816 441 MIPMALLIL 449
Cdd:PRK06458  457 TSPMFVHLV 465
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
97-406 1.39e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 72.29  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  97 TTVILAQLFIL-----LAFSASELMLFYIAFEATLIPTLILITrWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQI 171
Cdd:PRK07234   93 TRFFYAQLLILhgsvnAAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQAN 171
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 172 GTLYLPMLKLSHPTlnsswssliAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVn 251
Cdd:PRK07234  172 GTFAFSGLATADPE---------AFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDV- 241
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 252 ptsNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIqtqwafsgAMILMISHGLTSSMLFCLAN 331
Cdd:PRK07234  242 ---PGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAG 310
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1591473816 332 TNYERTHSRILLLTRGLQPLLPLmatwwLLANLTNMALPPTTNLMAELTIVIALFNWsaFTIILTGAAILLTASY 406
Cdd:PRK07234  311 ALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLPW--QAIALNLAAVGTAASF 378
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
9-386 8.93e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 70.53  E-value: 8.93e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   9 AMLLPLAILSPRKYLWTN------TTLYSLLIATISLQWLTPTYYPNKGLTPWT----AIDQISSPLLVLSCWLLPLMIM 78
Cdd:PRK08667   16 AAVIPLVFRHKRKRVWQSvlwlviAIALLLFAGSLQLFTGNPLDIPLWGIAPGLditfHIDRLAAFFIILIGLVSLCVAI 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  79 ASQNHLEQEPTIRKR----VFTTTVILAQLFILLAFSASELMLFYiafEATLIPTLILITRWGSQPERLNAGIYLLFYTL 154
Cdd:PRK08667   96 YSLGYNEHMSSNERAnllsALTALFILSMLGVVASANTFSFLFFW---EIMALSSFFLVMNDYQEEETQRAGIFYFVMTQ 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 155 ASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWssliagLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAAL 234
Cdd:PRK08667  173 LSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVF------LLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGV 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 235 LLKLGGYGIMRitILVNPTSNNLHYPFITLAL--WGALMTSAICLRQIDLKSLIAYSSVSHMGLV-----------VAAT 301
Cdd:PRK08667  247 MLKVAVYGLVR--FLMDVLSPELWWGVLILLAgsISALLGVIYALKEHDLKGLLAYSSIENIGIIlmgiglyvifgVYGL 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 302 MIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTI 381
Cdd:PRK08667  325 DTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLL 404

                  ....*
gi 1591473816 382 VIALF 386
Cdd:PRK08667  405 YESFF 409
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
72-395 2.55e-12

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 68.41  E-value: 2.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  72 LLPLMI-MASQNHLEQEPTIRKRVFtttVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLL 150
Cdd:MTH00062   52 LLVLFLgLYSQVMFYNLLSGVSRFF---LFLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFL 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 151 FYTLASSLPLLIAILHLHNQIGTLYLpmlklshptlnSSWSSLIAGLALL-----LAFMVKAPLYGLHLWLPKAHVEAPI 225
Cdd:MTH00062  129 GYLLLTSLPLLLCLLYLSLVNGSFNF-----------SDWGSDDSVSLIVyyvlsFMFITKVPLFPFHTWLPIVHAEASS 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 226 AGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALMTSaicLRQIDLKSLIAYSSVSHMglVVAATMIQT 305
Cdd:MTH00062  198 PVSIFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITA---CSELDGKRWLAFLSLSHI--LVPVLGLFV 272
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 306 QWAFSGAMILMIS--HGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVI 383
Cdd:MTH00062  273 GDWSSINLSFFYClgHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVS 352
                         330
                  ....*....|..
gi 1591473816 384 ALFNWSAFTIIL 395
Cdd:MTH00062  353 SSFGVLVYLLFW 364
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-409 2.72e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 68.46  E-value: 2.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 108 LAFSASELMLFYIAFEATLIPTLILITRWGSqPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLn 187
Cdd:PRK12665  126 NAFLAGDLFNLYVGFEILLVASYVLLTLGAT-AARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVRLDEL- 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 188 SSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPtsnnlHYPFITLALW 267
Cdd:PRK12665  204 PSGTRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFP-----GGGLDTLLMV 278
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 268 GALMTSAI----CLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILL 343
Cdd:PRK12665  279 VALLTMVVgilgAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLR 358
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 344 LTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIA-LFNWSAFTIILTGAAIlLTASYTLY 409
Cdd:PRK12665  359 RLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAgAEDGTWLAWALVAGGV-VTSLLTLY 424
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
213-401 5.39e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 68.02  E-value: 5.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 213 HLWLPKAhVEAPIAGSMLLAALLLKLGG-YGIMRItilvNPTSNNLHYPFITLALWGA---LMTSAICLRQIDLKSLIAY 288
Cdd:PRK12647  215 HFWLPNA-MEAPTPVSAYLHSATMVKAGiYLLARL----NPVLGGTPLWQTILPLFGGltmLTGALLAVRQTDLKLILAY 289
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 289 SSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMA 368
Cdd:PRK12647  290 STVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAG 369
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1591473816 369 LPPTTNLMAELTIVIALFNWSAFTIILTGAAIL 401
Cdd:PRK12647  370 LPPLFGFLAKELIYEALLEAPLWSLILTVAAVL 402
PRK12650 PRK12650
DUF4040 family protein;
106-407 7.10e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 67.76  E-value: 7.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 106 ILLAFSASELMLFYIAFEATLIPTLILITRWGSQPErlNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLP-MLKLSHP 184
Cdd:PRK12650  123 MLLLVLADDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSgILHSDVW 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 185 TLNSSWSSLIAGLALLLAFmVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILV--NPTSNNLhypFI 262
Cdd:PRK12650  201 AEKPGLTTVVAVLIAVAAF-TKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVWNWL---LI 276
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 263 TLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRIL 342
Cdd:PRK12650  277 IVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDI 356
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 343 LLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFN--WSAFTIILTGAAILLTASYT 407
Cdd:PRK12650  357 RRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEapGGNAGVVLLLVGAALGAVFT 423
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
95-407 2.94e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 65.50  E-value: 2.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  95 FTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGI-YLLFYTLASSLpLLIAILHLHNQIGT 173
Cdd:PRK08376  123 YYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIkYMFVGSLASSM-VLLGIALLYGQYGT 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 174 LYLPMLKlSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPiAGSMLLAALLLKLGGYGIMRITI-LVNP 252
Cdd:PRK08376  202 LNMAYLA-VKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAP-SSISAMLLVIKQAGLYALARVLFsIYGP 279
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 253 TSNNLHYPF--ITLALWGALMTSAICLRQIDLKSLIAYSSVSHMG---------LVVAATMIQTQW---AFSGAMILMIS 318
Cdd:PRK08376  280 AINLATVGWviIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGymllglgvgLAALGDPAMASYgeiALAGGIYHIVN 359
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 319 HGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIV--IALFN--WSAFTII 394
Cdd:PRK08376  360 HALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYesSALFNpiLGVIAMI 439
                         330
                  ....*....|...
gi 1591473816 395 LTgaaILLTASYT 407
Cdd:PRK08376  440 GS---VLTLASFV 449
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
93-412 8.06e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 64.01  E-value: 8.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  93 RVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQpERLNAGIYLLFYTLASSLPLLIAILHL----H 168
Cdd:PRK08676  102 KVFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSAR-ENIDAALKYIFIASTAMIFAFIGLIFLfsltR 180
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 169 NQIGTLYLPMLKL-SHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRIT 247
Cdd:PRK08676  181 QALGTGTLNWTELaAHASLLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLS 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 248 ILVNPTSNNLHYPFITLALwGALMTSAIC---LRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSS 324
Cdd:PRK08676  261 ALLRQSGAAEQFSNVLIGL-GIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKS 339
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 325 MLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAILLTA 404
Cdd:PRK08676  340 GLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAA 419

                  ....*...
gi 1591473816 405 SYTLYMLM 412
Cdd:PRK08676  420 SSFAIFLL 427
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
203-449 1.14e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 63.25  E-value: 1.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 203 FMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTS--NNLHYPFITLALWGALMTSAICLRQI 280
Cdd:PRK08377  216 LAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQK 295
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 281 DLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWL 360
Cdd:PRK08377  296 NVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALT 375
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 361 LANLTNMALPPTTNLMAELTIVIALFN--WSAFTIILTGAAILLTASYTLYMLMMTQRGalpshitsiQNSSTREHLLMA 438
Cdd:PRK08377  376 IGALSTVGIPLFNVFWSKFRIILAGLSagYTWPVALVLGASVVEAVYYFRLIHTMWFKG---------EGERIRENAAIG 446
                         250
                  ....*....|.
gi 1591473816 439 LHMIPMALLIL 449
Cdd:PRK08377  447 IILLLLAALIV 457
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
109-412 2.35e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 62.27  E-value: 2.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 109 AFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLpLLIAILHLHNQIGTLYLPML--KLSHPTL 186
Cdd:PRK07691  124 AFLTGDIFNLFVFFEVMLMASYVLIVIGGTKIQLRESIKYVLINVVSSAF-FVVAVAILYSVVGTLNMADIsvKIAELSA 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 187 NSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRI-TILVNPTSNNLHYPFITLA 265
Cdd:PRK07691  203 GQTGLITVVAILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILA 282
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 266 LWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLT 345
Cdd:PRK07691  283 LLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKM 362
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1591473816 346 RGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIiltGAAILLTASYTLYMLM 412
Cdd:PRK07691  363 GGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVS---GIIVLLSSLLVLYSVI 426
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
262-449 8.88e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 60.94  E-value: 8.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 262 ITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQtqwAFSGAMILMISHGLTSSMLFCLANTNYERTHSRI 341
Cdd:COG1009   279 AIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRD 355
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 342 LLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILTGAAIL---LTASYTLYMLMMT---- 414
Cdd:COG1009   356 IRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVffgk 435
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1591473816 415 QRGALPSHItsiqnssTREHLLMALHMIPMALLIL 449
Cdd:COG1009   436 PRPKTPKHP-------HESPWLMTLPLVVLAVLSL 463
PRK12646 PRK12646
DUF4040 family protein;
112-448 1.68e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 60.15  E-value: 1.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 112 ASELMLFYIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLP-MLKLSHPTLNSSW 190
Cdd:PRK12646  129 SDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITeILGQADHIKNHGL 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 191 SSLIAGLALLLAFmVKAPLYGLHLWLPKAhVEAPIAGSMLLAALLLKLGG-YGIMRITILVNpTSNNLHYPFITLALWGA 269
Cdd:PRK12646  209 FIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLHSATMVKAGiFLLFRFTPLLG-LSNMYIYIVTFVGLITM 285
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 270 LMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFS--------------GAMILMISHGLTSSMLFCLANTNYE 335
Cdd:PRK12646  286 LFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHqqdaiasiyvfvlfAALFHLMNHAIFKCALFMGVGIIDH 365
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 336 RTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAE---LTIVIALFNWSAFTIILTGA-------AILLTAS 405
Cdd:PRK12646  366 EAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKemfLDALTQTGQLSQFSLISMIIivfigviASIFTFT 445
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1591473816 406 YTLYMLMMTQRGalPSHITSIQNSSTREHLLMALHMIPMALLI 448
Cdd:PRK12646  446 YALYMVKEVFWG--KYDSKVFTKKNIHEPWLFSLPSLILMVLV 486
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
110-327 2.61e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 59.24  E-value: 2.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 110 FSASELMLFYIAFEATLIPTLILITRwGSQPERLNAGIYLLFYTLASSLpLLIAILHLHNQIGTLYLPMLkLSHPTLNSS 189
Cdd:PRK08668  115 FLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVLSAIGAYA-MLYAIFLIYAKTGTFDFADI-SQGLINDTS 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 190 WSSLIAGLALLLAFMV-KAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMrITILVNPTS------------NN 256
Cdd:PRK08668  192 TGFALIVFLFLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTklfsefgtyrgvPL 270
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1591473816 257 LHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLF 327
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
99-421 2.66e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 59.06  E-value: 2.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  99 VILAQLFILLAFSaSELMLFYIAFEATLIPTLILITrWGSQPERLNAGI-YLLFYTLASSLPLLIAILHLHNQIGTLYLP 177
Cdd:PRK06589  123 NLTILIGVLIALS-SDLFTMFVCYELLTISTAFLIG-HTRNNISLSGGYkYLKILMISALLLFLPAVILIYTKTGNLDFV 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 178 MLKLShptlnsSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSN-- 255
Cdd:PRK06589  201 SGGLF------SKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYlq 274
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 256 ---NLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANT 332
Cdd:PRK06589  275 rifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGS 354
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 333 NYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWS--AFTIILTGAAILLTASYTLYM 410
Cdd:PRK06589  355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpWLSIIVMLVVIASSILSALYL 434
                         330
                  ....*....|.
gi 1591473816 411 LMMTQRGALPS 421
Cdd:PRK06589  435 LKILSSIYKPS 445
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
95-454 1.70e-08

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 56.49  E-value: 1.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  95 FTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGI-YLLFYTLASSLpLLIAILHLHNQIGT 173
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSTEAGLkYFILGAFSSGL-LLFGISLIYGFTGS 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 174 LYL-PMLKLSHPTLNSSWSSLIAGLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNP 252
Cdd:TIGR01770 183 LNFeDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILF 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 253 T-SNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTS----SMLF 327
Cdd:TIGR01770 263 GfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSlgafGVLS 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 328 CLANTNYERTHSriLLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFN----WSAFTIILTGAailLT 403
Cdd:TIGR01770 343 LLRSYKDEWIEY--ISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKsglyWLAVIAVLTSV---IG 417
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1591473816 404 ASYTL----YMLMMTQRGALPSHITSIQNSstrehLLMALHMIPMALLILKPELI 454
Cdd:TIGR01770 418 AFYYLrvvkVMYFDKPERRIPSNPQSKAQS-----LLLSISALFILFLGLFPSLI 467
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
205-396 1.00e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 53.97  E-value: 1.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 205 VKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRIT--------ILVNPTSNNLhypFITLALWGALMTSAIC 276
Cdd:PRK12662  221 IKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVydvfkanfVFTTLPFNNV---FMILAALAIVFGSVLA 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 277 LRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANT---NYERTHSRILLltrGLQPLLP 353
Cdd:PRK12662  298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTTKLEDCL---NLWKSMP 374
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1591473816 354 LMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIILT 396
Cdd:PRK12662  375 KITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVV 417
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
109-412 1.46e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.80  E-value: 1.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 109 AFSASELMLFYIAFEATLIPTLILITrWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNS 188
Cdd:PRK12663  124 SFLTGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGD 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 189 SWSSLIAGLALLLAFMVKAPLYGLHlWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWG 268
Cdd:PRK12663  203 TATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAI 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 269 ALMTSAI-CLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRG 347
Cdd:PRK12663  282 TMVIGALgALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGG 361
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1591473816 348 LQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAFTIIltgAAILLTASYTLYMLM 412
Cdd:PRK12663  362 LYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILL---ALMLITSLITMYSLF 423
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
203-371 2.75e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 49.89  E-value: 2.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 203 FMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITI-LVNPTSNNLHYPFITLALWGALMTSAICLRQID 281
Cdd:PRK06521  220 FGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALGAISAVLGVLYALAEHD 299
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 282 LKSLIAYSSVSHMGLVVAA---TMI--------QTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQP 350
Cdd:PRK06521  300 LKRLLAYSTIENIGIIFVGlglAMVfiaygmplLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIR 379
                         170       180
                  ....*....|....*....|.
gi 1591473816 351 LLPLMATWWLLANLTNMALPP 371
Cdd:PRK06521  380 RMPWTAWAFLIGCLAISALPP 400
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
212-402 9.49e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 47.66  E-value: 9.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 212 LHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSV 291
Cdd:PRK06525  226 FYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTI 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 292 SHMGLVVAATMIQ---TQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMA 368
Cdd:PRK06525  306 TQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITG 385
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1591473816 369 LPPTTNLMAELTIVIALFNWSAFTIILTGAAILL 402
Cdd:PRK06525  386 VPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLL 419
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-380 3.42e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.10  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  59 DQISSPLLVLSCWLLPLMIMASQNHLEQEPTIrKRVFTTTVILAQLFILLAFSASELMLFyIAFEATLIPTLILITRWGS 138
Cdd:MTH00032   79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHV-PRFLCYLSLFTFLMMVLVTSDNYLQLF-IGWEGVGVCSYLLVAFWTT 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 139 QPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLK---LSHPTLNSSWSSLIAGLALLLAFMV---------- 205
Cdd:MTH00032  157 RIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNggsVGSGIMDRGYYGGGAYESPLAPFAIigillligci 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 206 -KAPLYGLHLWLPKAhVEAPIAGSMLLAALLLKLGGYGIMritILVNPTSNNLHYPFITLALWGAL---MTSAICLRQID 281
Cdd:MTH00032  237 gKSAQLGLHTWLPDA-MEGPTPVSALIHAATMVTAGVFLM---IRSFPLFEKAPLTLLIITIFGALtafFAATVGLVQND 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 282 LKSLIAYSSVSHMGLVVaaTMIQTQWAFSGAMILMISHGLTSSMLFCLA-----NTNYERTHSRILlltRGLQPLLPLMA 356
Cdd:MTH00032  313 LKKVIAYSTCSQLGYMV--LIIGIEGSHNVGLFHLVNHAFFKALLFLSAgsvihSTTVDEQDMRKM---GGLIHSIPFTY 387
                         330       340
                  ....*....|....*....|....*....
gi 1591473816 357 TWWLLANLTNMALPPTT-----NLMAELT 380
Cdd:MTH00032  388 TMMLIGSFSIMGLPYLTgfyskDLILELT 416
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
256-371 1.80e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.87  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 256 NLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYE 335
Cdd:PRK06277  264 SAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSY 343
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1591473816 336 RTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPP 371
Cdd:PRK06277  344 RTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPP 379
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
4-323 1.88e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 43.57  E-value: 1.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816   4 IIAPTAMLLPLAIL---SPRKYLWTNTTLYSLLIATISLqWLTPTYYPNKGLTPWTAIDQISSPLLVLSCWLLPLMIMAS 80
Cdd:COG1007    12 ILLLGALVLLLLDLflpRRSRRLLAGLALLGLLLALALL-LLALGGGTGTAFGGMFVVDGFALFFKLLILLAALLVLLLS 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816  81 QNHLEQEPtIRKRVFTTTVILAQLFILLAFSASELMLFYIAFEATLIPTLILITRWGSQPERLNAGI-YLLFYTLASSLp 159
Cdd:COG1007    91 RDYLERRG-LLRGEFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGF- 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 160 LLIAILHLHNQIGTLYLP--MLKLSHPTLNSswssliAGLALLLAFMV-----KAPLYGLHLWLPKAHVEAPIAGSMLLA 232
Cdd:COG1007   169 LLYGISLLYGATGSLNLAgiAAALAAGGANS------PLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLA 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 233 ALLLKLGGYGIMRITILVNPT-SNNLHYPFITLA----LWGALMTsaicLRQIDLKSLIAYSSVSHMGLVVAATMIQTQW 307
Cdd:COG1007   243 TAPKIAAFAALLRLLVEAFPGlAADWQLLLAVLAvlsmTVGNLAA----LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPL 318
                         330
                  ....*....|....*.
gi 1591473816 308 AFSGAMILMISHGLTS 323
Cdd:COG1007   319 GVSAALFYLLAYLFMN 334
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
104-449 2.31e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.53  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 104 LFILLAFSASELMLFyIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSH 183
Cdd:MTH00020  123 LMVVLVTSDNYLQLF-IGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFNMV 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 184 PTLNSSwSSLIAGLALLLAFMVKAPLYGLHLWLPKAhVEAPIAGSMLLAALLLKLGG-YGIMRITILVNPTSNNLHYPFI 262
Cdd:MTH00020  202 VSAPSS-DITLICLFLFIGAVGKSAQLGLHTWLPDA-MEGPTPVSALIHAATMVTAGvFLLIRSSPLFEQAPLALIIVTI 279
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 263 TLALwGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTqwaFSGAMILMISHGLTSSMLFCLANT-----NYERT 337
Cdd:MTH00020  280 VGSL-TVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSH---YSISLFHLMNHAFFKALLFLSAGSvihalSDEQD 355
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 338 HSRIllltRGLQPLLPLMATWWLLANLTNMALPPTTNLMA-ELTIVIALF-NWSAFTIILTGAAILLTASYTLYMLmmtq 415
Cdd:MTH00020  356 MRKM----GGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSkDLILELAFGqYYLIFAYWLGCFSALLTAFYSIRLI---- 427
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1591473816 416 rgalpsHITSIQNSSTREHLLMALH------MIPMALLIL 449
Cdd:MTH00020  428 ------YLTFLSNTNLKKAVFFHLHegdwnlLLPLGILAL 461
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-330 5.13e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 42.53  E-value: 5.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 137 GSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPTLNSSWSSLIAG--LALLLAFMVKAPLYGLHL 214
Cdd:PRK12666  152 GSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAADRALLEAgaALLLVVFLIKAAMWPLNF 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 215 WLPKAHVEA--PIAGSMllaALLLKLGGYGIMRITILV-NPTSNNLHYPFITLALWGALMTSAI----CLRQIDLKSLIA 287
Cdd:PRK12666  232 WLPPAYAAAsaPVAALF---AIMTKVGIYAILRLSTLLfGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRRLAA 308
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1591473816 288 YSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSMLFCLA 330
Cdd:PRK12666  309 YLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
106-401 5.97e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.51  E-value: 5.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 106 ILLAFSASELMLFyIAFEATLIPTLILITRWGSQPERLNAGIYLLFYTLASSLPLLIAILHLHNQIGTLYLPMLKLSHPT 185
Cdd:PRK12649  125 IGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSEL 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 186 LNSSWSSLIAGLALLLAFM---VKAPLYGLHLWLPKAhVEAPIAGSMLLAALLLKLGG-YGIMRItilvNPTSNNLHYPF 261
Cdd:PRK12649  204 IENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLHSATMVKAGvYLVARI----HPIFSGTEAWF 278
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 262 ITLALWG---ALMTSAICLRQIDLKSLIAYSSVSHMGLVVA----ATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNY 334
Cdd:PRK12649  279 ILVSGTGmitMVLAGFLAFRQTDIKAILAYSTISQLAYLMTmygyTTYHEPGLGVAAATFHLLNHATFKACLFLVAGIVA 358
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1591473816 335 ERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMA-----ELTIVIALFNWSAFTIILTGAAIL 401
Cdd:PRK12649  359 HEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSkemfyETSVEMGALIGGPFTIIIPAVAVL 430
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
277-323 1.22e-03

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.96  E-value: 1.22e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1591473816 277 LRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTS 323
Cdd:PRK05777  289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
107-411 2.65e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.29  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 107 LLAFS--------ASELMLFYIAFEATLIPTLILItrwGSQPERLN---AGIYLLFYTLASSLPLLIAILHLHNQIGTLY 175
Cdd:PRK12644  112 LVAFAgamfglvtSDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGTYR 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 176 LPMLklshptLNSSWSSLIAGLALLLAF---MVKAPLYGLHLWLPKAhVEAPI-------AGSMLLAalllklGGYGIMR 245
Cdd:PRK12644  189 LSEL------LADPPTGPAVSVAVVLILvgaLSKSAIVPFHFWLPGA-MAAPTpvsaylhAAAMVKA------GIYLVAR 255
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 246 ITILVNpTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSVSHMGLVVAATMIQTQWAFSGAMILMISHGLTSSM 325
Cdd:PRK12644  256 LAPGFA-DVPVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAA 334
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 326 LFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVIALFNWSAF----TIILTGAAI- 400
Cdd:PRK12644  335 LFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALgpagPVVLAGIVLg 414
                         330
                  ....*....|..
gi 1591473816 401 -LLTASYTLYML 411
Cdd:PRK12644  415 sILTVAYSLRFL 426
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
212-390 6.84e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.04  E-value: 6.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 212 LHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVNPTSNNLHYPFITLALWGALMTSAICLRQIDLKSLIAYSSV 291
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTL 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 292 SHMGLVV-----AATMIQTQ------WAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWL 360
Cdd:PRK08042  279 ENIGIILlglgaGVTGIALEqpaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAML 358
                         170       180       190
                  ....*....|....*....|....*....|
gi 1591473816 361 LANLTNMALPPTTNLMAELTIVIALFNWSA 390
Cdd:PRK08042  359 VGLMAMAALPPLNGFAGEWVIYQSFFKLSN 388
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
212-371 9.78e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 38.35  E-value: 9.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 212 LHLWLPKAhVEAPIAGSMLLAALLLKLGGYGIMRITILV--NPTSNNLhypFITLALWGALMTSAICLRQIDLKSLIAYS 289
Cdd:PRK07390  240 LHLWLDEA-MEGPNPASILRNSVVVATGAWVLIKLQPVLalSPVALTV---LIVIGTVTAIGASLVAIAQIDIKRALSYS 315
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1591473816 290 SVSHMGLV-VAATMIQTQWAFsgamILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMA 368
Cdd:PRK07390  316 TSAYLGLVfIAVGLQQPDIAL----LLLLTHAIAKALLFMSVGSIILTTITQDLTELGGLWSRMPATTLAFLVGSAGLVA 391

                  ...
gi 1591473816 369 LPP 371
Cdd:PRK07390  392 LLP 394
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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