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Conserved domains on  [gi|1603720755|gb|QBQ71960|]
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DNA breaking-rejoining protein [Klebsiella phage ST13-OXA48phi12.4]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdaE_coli super family cl49323
YdaE family protein; Members of this family include YdaE from the Rac prophage region of ...
 3-51 7.07e-23

YdaE family protein; Members of this family include YdaE from the Rac prophage region of Escherichia coli K-12, a homolog from the Gifsy-1 prophage region of Salmonella enterica LT2, and related proteins from other closely related species. The presence of four conserved Cys residues has led to annotations as a zinc-binding protein or metallothionein, but the actual function seems unclear.


The actual alignment was detected with superfamily member NF041288:

Pssm-ID: 469185  Cd Length: 50  Bit Score: 80.90  E-value: 7.07e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1603720755  3 KKCGYCRKAIE-GKPVVSTLLYLQGNQLARKEKEYCSERCASYDQMAHEG 51
Cdd:NF041288   1 KKCAYCRKPIEeGKEVKSTLLYMHGTQLARKERKYCSKRCAEYDQMAHEL 50
 
Name Accession Description Interval E-value
YdaE_coli NF041288
YdaE family protein; Members of this family include YdaE from the Rac prophage region of ...
 3-51 7.07e-23

YdaE family protein; Members of this family include YdaE from the Rac prophage region of Escherichia coli K-12, a homolog from the Gifsy-1 prophage region of Salmonella enterica LT2, and related proteins from other closely related species. The presence of four conserved Cys residues has led to annotations as a zinc-binding protein or metallothionein, but the actual function seems unclear.


Pssm-ID: 469185  Cd Length: 50  Bit Score: 80.90  E-value: 7.07e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1603720755  3 KKCGYCRKAIE-GKPVVSTLLYLQGNQLARKEKEYCSERCASYDQMAHEG 51
Cdd:NF041288   1 KKCAYCRKPIEeGKEVKSTLLYMHGTQLARKERKYCSKRCAEYDQMAHEL 50
 
Name Accession Description Interval E-value
YdaE_coli NF041288
YdaE family protein; Members of this family include YdaE from the Rac prophage region of ...
 3-51 7.07e-23

YdaE family protein; Members of this family include YdaE from the Rac prophage region of Escherichia coli K-12, a homolog from the Gifsy-1 prophage region of Salmonella enterica LT2, and related proteins from other closely related species. The presence of four conserved Cys residues has led to annotations as a zinc-binding protein or metallothionein, but the actual function seems unclear.


Pssm-ID: 469185  Cd Length: 50  Bit Score: 80.90  E-value: 7.07e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1603720755  3 KKCGYCRKAIE-GKPVVSTLLYLQGNQLARKEKEYCSERCASYDQMAHEG 51
Cdd:NF041288   1 KKCAYCRKPIEeGKEVKSTLLYMHGTQLARKERKYCSKRCAEYDQMAHEL 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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