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Conserved domains on  [gi|1613887236|ref|NP_001356576|]
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snRNA-activating protein complex subunit 3 isoform 2 [Homo sapiens]

Protein Classification

snRNA-activating protein complex subunit( domain architecture ID 10573809)

snRNA-activating protein complex (SNAPc) subunit is part of the complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SNAPC3 pfam12251
snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part ...
202-379 3.93e-90

snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.


:

Pssm-ID: 463506  Cd Length: 191  Bit Score: 269.47  E-value: 3.93e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613887236 202 QTMLVLGSQKLTQLRDSIRCVSDLQ--------------IGGEFSNtpDQA-PEHISKVRTIIEWSESHDRGYGKFQTAR 266
Cdd:pfam12251   1 QEFLVLGSQTLTELRDKIYCVSDKLeelakdkyksgfffIEDTFYN--DLRdPNNIDYSETIREWAKNKPKGLGPFKVAS 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613887236 267 MEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFA 346
Cdd:pfam12251  79 MEDTRFNDLEIRLGQPYVYCHQGDCEHLIVFSDIRLLHPDDCLDRSAYPLRTFKPKFRRRKCLVCGIYSAKWVVVNDKLL 158
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1613887236 347 PEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYV 379
Cdd:pfam12251 159 PEDPSYFCDSCFRSLHYDKDGNKLGDFKAYPYI 191
 
Name Accession Description Interval E-value
SNAPC3 pfam12251
snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part ...
202-379 3.93e-90

snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.


Pssm-ID: 463506  Cd Length: 191  Bit Score: 269.47  E-value: 3.93e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613887236 202 QTMLVLGSQKLTQLRDSIRCVSDLQ--------------IGGEFSNtpDQA-PEHISKVRTIIEWSESHDRGYGKFQTAR 266
Cdd:pfam12251   1 QEFLVLGSQTLTELRDKIYCVSDKLeelakdkyksgfffIEDTFYN--DLRdPNNIDYSETIREWAKNKPKGLGPFKVAS 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613887236 267 MEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFA 346
Cdd:pfam12251  79 MEDTRFNDLEIRLGQPYVYCHQGDCEHLIVFSDIRLLHPDDCLDRSAYPLRTFKPKFRRRKCLVCGIYSAKWVVVNDKLL 158
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1613887236 347 PEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYV 379
Cdd:pfam12251 159 PEDPSYFCDSCFRSLHYDKDGNKLGDFKAYPYI 191
 
Name Accession Description Interval E-value
SNAPC3 pfam12251
snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part ...
202-379 3.93e-90

snRNA-activating protein complex (SNAPc), subunit 3; This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.


Pssm-ID: 463506  Cd Length: 191  Bit Score: 269.47  E-value: 3.93e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613887236 202 QTMLVLGSQKLTQLRDSIRCVSDLQ--------------IGGEFSNtpDQA-PEHISKVRTIIEWSESHDRGYGKFQTAR 266
Cdd:pfam12251   1 QEFLVLGSQTLTELRDKIYCVSDKLeelakdkyksgfffIEDTFYN--DLRdPNNIDYSETIREWAKNKPKGLGPFKVAS 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613887236 267 MEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFA 346
Cdd:pfam12251  79 MEDTRFNDLEIRLGQPYVYCHQGDCEHLIVFSDIRLLHPDDCLDRSAYPLRTFKPKFRRRKCLVCGIYSAKWVVVNDKLL 158
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1613887236 347 PEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYV 379
Cdd:pfam12251 159 PEDPSYFCDSCFRSLHYDKDGNKLGDFKAYPYI 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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