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Conserved domains on  [gi|1624154742|gb|THU57098|]
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hypothetical protein C4D60_Mb11t24190 [Musa balbisiana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
stomagen-like super family cl25585
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
1-115 3.79e-34

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


The actual alignment was detected with superfamily member PLN03207:

Pssm-ID: 452405  Cd Length: 113  Bit Score: 114.18  E-value: 3.79e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624154742   1 MALANPTNGT------LLFFCFLFSSIVmCALCRPD--PGGVFSHSSFPPLKRGSQSPGITKKegswrwrdaSGRRLLIG 72
Cdd:PLN03207    1 MANECMTATTrcltlfFLLFFLLLGAYV-IQGSRNQsiLPYDQSISYPHQETVKLLNGGHLSK---------SSRRLMIG 70
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1624154742  73 STAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCHR 115
Cdd:PLN03207   71 STAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
 
Name Accession Description Interval E-value
PLN03207 PLN03207
stomagen; Provisional
1-115 3.79e-34

stomagen; Provisional


Pssm-ID: 215632  Cd Length: 113  Bit Score: 114.18  E-value: 3.79e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624154742   1 MALANPTNGT------LLFFCFLFSSIVmCALCRPD--PGGVFSHSSFPPLKRGSQSPGITKKegswrwrdaSGRRLLIG 72
Cdd:PLN03207    1 MANECMTATTrcltlfFLLFFLLLGAYV-IQGSRNQsiLPYDQSISYPHQETVKLLNGGHLSK---------SSRRLMIG 70
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1624154742  73 STAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCHR 115
Cdd:PLN03207   71 STAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
65-114 1.99e-28

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


Pssm-ID: 407095  Cd Length: 50  Bit Score: 97.60  E-value: 1.99e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1624154742  65 SGRRLLIGSTAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCH 114
Cdd:pfam16851   1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
stomagen-like cd22743
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
71-115 2.17e-13

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


Pssm-ID: 439359  Cd Length: 45  Bit Score: 59.39  E-value: 2.17e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1624154742  71 IGSTAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCHR 115
Cdd:cd22743     1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
 
Name Accession Description Interval E-value
PLN03207 PLN03207
stomagen; Provisional
1-115 3.79e-34

stomagen; Provisional


Pssm-ID: 215632  Cd Length: 113  Bit Score: 114.18  E-value: 3.79e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624154742   1 MALANPTNGT------LLFFCFLFSSIVmCALCRPD--PGGVFSHSSFPPLKRGSQSPGITKKegswrwrdaSGRRLLIG 72
Cdd:PLN03207    1 MANECMTATTrcltlfFLLFFLLLGAYV-IQGSRNQsiLPYDQSISYPHQETVKLLNGGHLSK---------SSRRLMIG 70
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1624154742  73 STAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCHR 115
Cdd:PLN03207   71 STAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
65-114 1.99e-28

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


Pssm-ID: 407095  Cd Length: 50  Bit Score: 97.60  E-value: 1.99e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1624154742  65 SGRRLLIGSTAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCH 114
Cdd:pfam16851   1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
stomagen-like cd22743
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
71-115 2.17e-13

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


Pssm-ID: 439359  Cd Length: 45  Bit Score: 59.39  E-value: 2.17e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1624154742  71 IGSTAPICTYNECRGCRFKCSAEQVPVDAGDPMNSAYHYRCVCHR 115
Cdd:cd22743     1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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