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Conserved domains on  [gi|1690904918|ref|WP_139603800|]
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sporulation transcriptional regulator SpoIIID [Paenibacillus hemerocallicola]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 366238)

helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family; HTH domain binds DNA and may function as a transcriptional regulator

Gene Ontology:  GO:0003677|GO:0006355

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SpoIIID COG5830
Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and ...
 1-80 7.05e-48

Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes [Cell cycle control, cell division, chromosome partitioning, Transcription];


:

Pssm-ID: 444532  Cd Length: 84  Bit Score: 146.92  E-value: 7.05e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690904918  1 MHDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYK 80
Cdd:COG5830    1 MKDYIEERVLEIAKYIIETKATVRQAAKVFGVSKSTVHKDLTERLPKINPELAKEVKKILEYNKAERHIRGGEATKKKYK 80
 
Name Accession Description Interval E-value
SpoIIID COG5830
Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and ...
 1-80 7.05e-48

Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444532  Cd Length: 84  Bit Score: 146.92  E-value: 7.05e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690904918  1 MHDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYK 80
Cdd:COG5830    1 MKDYIEERVLEIAKYIIETKATVRQAAKVFGVSKSTVHKDLTERLPKINPELAKEVKKILEYNKAERHIRGGEATKKKYK 80
SpoIIID pfam12116
Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding ...
 2-80 1.07e-39

Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.


Pssm-ID: 403367  Cd Length: 82  Bit Score: 126.33  E-value: 1.07e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1690904918  2 HDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYK 80
Cdd:pfam12116  1 KDYIEERVIEIAKYIVESKATVRQTAKVFGVSKSTVHKDVTERLPKINPQLAEQVKNVLDYNKAERHIRGGEATRMKYK 79
spore_III_D TIGR02844
sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional ...
 2-81 6.95e-37

sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes. [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination]


Pssm-ID: 131891  Cd Length: 80  Bit Score: 119.21  E-value: 6.95e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690904918  2 HDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYKR 81
Cdd:TIGR02844  1 KDYIEERVLEIGKYIVETKATVRETAKVFGVSKSTVHKDVTERLPEINPDLAEEVKEVLDLNKAERHIRGGKATKLKYKK 80
 
Name Accession Description Interval E-value
SpoIIID COG5830
Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and ...
 1-80 7.05e-48

Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444532  Cd Length: 84  Bit Score: 146.92  E-value: 7.05e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690904918  1 MHDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYK 80
Cdd:COG5830    1 MKDYIEERVLEIAKYIIETKATVRQAAKVFGVSKSTVHKDLTERLPKINPELAKEVKKILEYNKAERHIRGGEATKKKYK 80
SpoIIID pfam12116
Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding ...
 2-80 1.07e-39

Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.


Pssm-ID: 403367  Cd Length: 82  Bit Score: 126.33  E-value: 1.07e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1690904918  2 HDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYK 80
Cdd:pfam12116  1 KDYIEERVIEIAKYIVESKATVRQTAKVFGVSKSTVHKDVTERLPKINPQLAEQVKNVLDYNKAERHIRGGEATRMKYK 79
spore_III_D TIGR02844
sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional ...
 2-81 6.95e-37

sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes. [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination]


Pssm-ID: 131891  Cd Length: 80  Bit Score: 119.21  E-value: 6.95e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690904918  2 HDYIKERTIKIGRSLVETRQTVRTIAKEFGVSKSTVHKDLTERLPEINPELANQVKLILEYHKSIRHLRGGEATKVKYKR 81
Cdd:TIGR02844  1 KDYIEERVLEIGKYIVETKATVRETAKVFGVSKSTVHKDVTERLPEINPDLAEEVKEVLDLNKAERHIRGGKATKLKYKK 80
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 7-43 6.80e-03

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 33.95  E-value: 6.80e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1690904918   7 ERTIKIgRSLVETRQTVRT--IAKEFGVSKSTVHKDLTE 43
Cdd:COG1349     5 ERRQKI-LELLRERGRVSVeeLAERLGVSEETIRRDLAE 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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