|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-211 |
7.70e-160 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 446.39 E-value: 7.70e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00100 43 LQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00100 123 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHE 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00100 203 TGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-164 |
4.94e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 239.96 E-value: 4.94e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSY--TFLETWNIGVVLL 78
Cdd:cd00284 35 IQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFL 158
Cdd:cd00284 115 LLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
|
....*.
gi 1697578996 159 HETGSN 164
Cdd:cd00284 195 HEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-162 |
1.01e-74 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 223.41 E-value: 1.01e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYG--SYTFLETWNIGVVLL 78
Cdd:pfam00033 26 VQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFL 158
Cdd:pfam00033 106 VLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFL 185
|
....
gi 1697578996 159 HETG 162
Cdd:pfam00033 186 HETG 189
|
|
| QcrB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-211 |
1.17e-69 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 224209 [Multi-domain] Cd Length: 381 Bit Score: 217.22 E-value: 1.17e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYT--FLETWNIGVVLL 78
Cdd:COG1290 51 IQVITGIFLALYYVPSAGLAFPSVPFIMREVPYGWLLRYMHLWGASLMFALVYLHMFRGFFYGAYKkpRELNWILGVLLF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIIAALAIVHLLF 157
Cdd:COG1290 131 LLTMATAFFGYSLPWDQMSYWGATVITNLFSAIPFIGTWLVQWLFGGFSVSDPTLNRFFALHvLLLPAIILALVGLHLSL 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1697578996 158 LHETGSNNPTGLNSDA--DKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:COG1290 211 LHKQGITNPAGIERKKklDVIPFHPYYTVKDLLGVVVFLLLFAYFLFFPPNFAGHP 266
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-211 |
7.70e-160 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 446.39 E-value: 7.70e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00100 43 LQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00100 123 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHE 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00100 203 TGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-211 |
5.61e-142 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 400.82 E-value: 5.61e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00119 44 TQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00119 124 LMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00119 204 TGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDP 254
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-211 |
1.18e-139 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 394.15 E-value: 1.18e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00156 33 IQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00156 113 VMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQ 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00156 193 TGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDP 243
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-211 |
4.86e-139 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 393.63 E-value: 4.86e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00131 43 TQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00131 123 VMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHE 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00131 203 TGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDP 253
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-211 |
2.36e-137 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 389.43 E-value: 2.36e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00074 44 AQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00074 124 VMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00074 204 TGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDP 254
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-211 |
1.53e-135 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 384.27 E-value: 1.53e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00191 40 IQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLIL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00191 120 SMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHE 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00191 200 TGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDP 250
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-211 |
4.31e-130 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 370.77 E-value: 4.31e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00145 44 IQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00145 124 SMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00145 204 TGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDP 254
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-211 |
3.99e-124 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 355.52 E-value: 3.99e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00016 44 IQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00016 124 TMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQ 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00016 204 TGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDP 254
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-211 |
5.32e-123 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 352.86 E-value: 5.32e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00034 43 IQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00034 123 TMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQ 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00034 203 TGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDP 253
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-211 |
2.43e-106 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 310.70 E-value: 2.43e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00224 44 IQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFIL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00224 124 TMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQ 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00224 204 TGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDP 254
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-211 |
2.17e-105 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 308.17 E-value: 2.17e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00022 42 IQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00022 122 TMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHV 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00022 202 DGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDP 252
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-211 |
4.40e-102 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 299.70 E-value: 4.40e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00053 44 IQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00053 124 MILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00053 204 DGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDA 254
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-164 |
4.94e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 239.96 E-value: 4.94e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSY--TFLETWNIGVVLL 78
Cdd:cd00284 35 IQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFL 158
Cdd:cd00284 115 LLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
|
....*.
gi 1697578996 159 HETGSN 164
Cdd:cd00284 195 HEQGSS 200
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-192 |
1.38e-78 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 240.22 E-value: 1.38e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00033 40 IQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00033 120 MMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHE 199
|
170 180 190
....*....|....*....|....*....|..
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFM 192
Cdd:MTH00033 200 KGSNEPLGLVGLSDRTAFHVYFTIKDILGFLI 231
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-162 |
1.01e-74 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 223.41 E-value: 1.01e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYG--SYTFLETWNIGVVLL 78
Cdd:pfam00033 26 VQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFL 158
Cdd:pfam00033 106 VLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFL 185
|
....
gi 1697578996 159 HETG 162
Cdd:pfam00033 186 HETG 189
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-211 |
1.08e-73 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 226.74 E-value: 1.08e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00086 32 FQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00086 112 VMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHS 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMlLLCLMTLVLFFPDLLGDP 211
Cdd:MTH00086 192 TGSTSSLYCHGDYDKICFGPEYWNKDAYNIIF-WLVFIIFSLFYPFNLGDP 241
|
|
| QcrB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-211 |
1.17e-69 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 224209 [Multi-domain] Cd Length: 381 Bit Score: 217.22 E-value: 1.17e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYT--FLETWNIGVVLL 78
Cdd:COG1290 51 IQVITGIFLALYYVPSAGLAFPSVPFIMREVPYGWLLRYMHLWGASLMFALVYLHMFRGFFYGAYKkpRELNWILGVLLF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIIAALAIVHLLF 157
Cdd:COG1290 131 LLTMATAFFGYSLPWDQMSYWGATVITNLFSAIPFIGTWLVQWLFGGFSVSDPTLNRFFALHvLLLPAIILALVGLHLSL 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1697578996 158 LHETGSNNPTGLNSDA--DKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:COG1290 211 LHKQGITNPAGIERKKklDVIPFHPYYTVKDLLGVVVFLLLFAYFLFFPPNFAGHP 266
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-210 |
4.72e-59 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 189.04 E-value: 4.72e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFA 80
Cdd:MTH00046 34 IQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 81 VMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHE 160
Cdd:MTH00046 114 VMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHK 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1697578996 161 TGSNNPTGL-NSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGD 210
Cdd:MTH00046 194 SGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLD 244
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
46-211 |
4.88e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 379304 Cd Length: 169 Bit Score: 147.38 E-value: 4.88e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 46 SMFFICLFLHVGRGMYYGSYTFLE--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 123
Cdd:pfam13631 1 LIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTMGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 124 GGFSVDKATLTRFFAFHF-ILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVL 202
Cdd:pfam13631 81 GGDFPGTATLPRFYALHVlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLVTVALLIGLAQ 160
|
....*....
gi 1697578996 203 FFPDLLGDP 211
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-166 |
4.50e-39 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 133.68 E-value: 4.50e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLE--TWNIGVVLL 78
Cdd:PRK03735 54 IQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIF 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIIAALAIVHLLF 157
Cdd:PRK03735 134 FVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLM 213
|
....*....
gi 1697578996 158 LHETGSNNP 166
Cdd:PRK03735 214 IRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-166 |
1.96e-33 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 119.06 E-value: 1.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 1 IQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLE--TWNIGVVLL 78
Cdd:CHL00070 46 VQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697578996 79 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIIAALAIVHLLF 157
Cdd:CHL00070 126 VLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLM 205
|
....*....
gi 1697578996 158 LHETGSNNP 166
Cdd:CHL00070 206 IRKQGISGP 214
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
165-211 |
2.96e-07 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 48.03 E-value: 2.96e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1697578996 165 NPTGLNSDADKIPFHPYYTIKDLLGVFMLLLCLMTLVLFFPDLLGDP 211
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHP 47
|
|
| |
