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Conserved domains on  [gi|17160949|gb|AAH17636|]
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Tshz1 protein, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 562-630 5.83e-04

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


:

Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 38.38  E-value: 5.83e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17160949 562 KGRQSNWNPQHLLILQAQFASSlretaegKYimsdLGPQERVHISKFTGLSMTTISHWLANVKYQLRRT 630
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKN-------PY----PSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 714-737 6.64e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 34.78  E-value: 6.64e-03
                          10        20
                  ....*....|....*....|....*
gi 17160949   714 FQCKLCNRTFASKHAVKLHL-SKTH 737
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLqGKKH 25
 
Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 562-630 5.83e-04

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 38.38  E-value: 5.83e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17160949 562 KGRQSNWNPQHLLILQAQFASSlretaegKYimsdLGPQERVHISKFTGLSMTTISHWLANVKYQLRRT 630
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKN-------PY----PSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 560-628 1.02e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.61  E-value: 1.02e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17160949    560 KRKGRQSnWNPQHLLILQAQFAsslretaEGKYimsdLGPQERVHISKFTGLSMTTISHWLANVKYQLR 628
Cdd:smart00389   1 KRRKRTS-FTPEQLEELEKEFQ-------KNPY----PSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 714-737 6.64e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 34.78  E-value: 6.64e-03
                          10        20
                  ....*....|....*....|....*
gi 17160949   714 FQCKLCNRTFASKHAVKLHL-SKTH 737
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLqGKKH 25
 
Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 562-630 5.83e-04

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 38.38  E-value: 5.83e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17160949 562 KGRQSNWNPQHLLILQAQFASSlretaegKYimsdLGPQERVHISKFTGLSMTTISHWLANVKYQLRRT 630
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKN-------PY----PSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 560-628 1.02e-03

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.61  E-value: 1.02e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17160949    560 KRKGRQSnWNPQHLLILQAQFAsslretaEGKYimsdLGPQERVHISKFTGLSMTTISHWLANVKYQLR 628
Cdd:smart00389   1 KRRKRTS-FTPEQLEELEKEFQ-------KNPY----PSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 714-737 6.64e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 34.78  E-value: 6.64e-03
                          10        20
                  ....*....|....*....|....*
gi 17160949   714 FQCKLCNRTFASKHAVKLHL-SKTH 737
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLqGKKH 25
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 714-737 8.10e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 34.54  E-value: 8.10e-03
                          10        20
                  ....*....|....*....|....
gi 17160949   714 FQCKLCNRTFASKHAVKLHLSKTH 737
Cdd:pfam13894   1 FKCPICGKSFSSKKSLKRHLKTHH 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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