|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
454-748 |
5.44e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.63 E-value: 5.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 454 LHELEKNL-------------MQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEARE 520
Cdd:COG1196 195 LGELERQLeplerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 521 QLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS 600
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 601 EGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALE 680
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 681 EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 748
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
413-718 |
7.31e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 92.69 E-value: 7.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 413 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEA 492
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 493 RQstskiDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLH 572
Cdd:COG1196 301 EQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 573 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE 652
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428051 653 EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 718
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
366-743 |
1.16e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 92.05 E-value: 1.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 366 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDketvfLQYRLQDLQqqYTESQKLSLKKDK 445
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-----LLKEKREYE--GYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 446 LLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT---SLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQL 522
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 523 KVSDQNLTQSKEEAHLSASSLEDAHRKIEncllqdkqkeevikDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 602
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIE--------------EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 603 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 682
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 683 IEALRQEAKRKekmaKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 743
Cdd:TIGR02169 464 LSKYEQELYDL----KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
452-839 |
5.64e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 89.74 E-value: 5.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLmqvqNSLREKEAELEKLqctTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNL 529
Cdd:TIGR02169 681 ERLEGLKREL----SSLQSELRRIENR---LDELSQELSDASRKIGEIekEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 530 TQSKEEAHLSASSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 609
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHK--LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 610 EKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEalrqE 689
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSI-------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR----E 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 690 AKRKEKMAKEHLrkldEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQtQLDSAIQKEKNCfq 769
Cdd:TIGR02169 901 LERKIEELEAQI----EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ-RVEEEIRALEPV-- 973
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 770 NMVSKEAYEELVRKsgncQDDLTQALEKLtqatsetkslnrslqqtQERKAQLEDEIAAYEERMKKLNME 839
Cdd:TIGR02169 974 NMLAIQEYEEVLKR----LDELKEKRAKL-----------------EEERKAILERIEEYEKKKREVFME 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
501-832 |
5.42e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.53 E-value: 5.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 501 CEALRAEIQKLKDSLEEAREQLKVSdQNLTQSKEEAHLSASSLEDAHRKienclLQDKQKEEVIKDLQSQLHKLQKESSK 580
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKLRELE-----AELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 581 IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLdedekkidelfhstQVSEQKQRELTNSIRKLEEELLEIKG 660
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI--------------ARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 661 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSL---NKYNSSQKVIQ 737
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAelaAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 738 ELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 816
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330
....*....|....*.
gi 1720428051 817 ERKAQLEDEIAAYEER 832
Cdd:COG1196 491 ARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
349-993 |
2.93e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 2.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 349 TKILKHLQEQKDSqcLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQD 428
Cdd:TIGR02168 212 AERYKELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK----LEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 429 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstsKIDCEALRAEI 508
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-----KEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 509 QKLKDSLEEAREQLKVSDQNLTQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHN 588
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSK----------------------------VAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 589 RQRLQELSSELSEGQRRLSNAEKEKslLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 668
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 669 LKKSKEQEKALEEEIEALRQEAKRKEKMAKEH-----LRKLDEEKEnlQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 743
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlseLISVDEGYE--AAIEAALGGRLQAVVVENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 744 ARQKDSIMILQTQLDSAIQ--------KEKNCFQNMVSKEAYEELVRKSGN-------CQDDLTQALEKLTQ-------- 800
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQgndreilkNIEGFLGVAKDLVKFDPKLRKALSyllggvlVVDDLDNALELAKKlrpgyriv 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 801 ------------ATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 868
Cdd:TIGR02168 649 tldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 869 lqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTP--KETCRHHRENDQIMNNVEQWAKEQKIA 946
Cdd:TIGR02168 729 ----SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1720428051 947 NEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 993
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
503-842 |
4.65e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.58 E-value: 4.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 503 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 582
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 583 EERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDE-KKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL 661
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 662 LEEKREQLKKS----KEQEKALEEEIEALRQEAKRKEKMAKEH---LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 734
Cdd:TIGR02169 831 LEKEIQELQEQridlKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 735 VIQELNAEIARQKDSIMILQTQLdSAIQKEKNCFQNMVSKEAYEELVRKSgncQDDLTQALEKL----TQATSETKSLNR 810
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAE---LQRVEEEIRALepvnMLAIQEYEEVLK 986
|
330 340 350
....*....|....*....|....*....|..
gi 1720428051 811 SLQQTQERKAQLEDEIAAYEERMKKLNmELKK 842
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYE-KKKR 1017
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
275-844 |
4.79e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 83.19 E-value: 4.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 275 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHrhpptssEDCEDITKILKH 354
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-------KELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 355 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLElDLHGLREETSCVIEKKDKETVFLqYRLQDLQQQYT 434
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 435 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcTTKELDTSLQEARQSTSKIDCEALRAEIQKL--- 511
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKELEELeka 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 512 KDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC--LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 589
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 590 QRLQELSSELSEGQRRLSNAEKEKSLlqKTLDEDEKKIDelfhsTQVSEQKQRELtnsiRKLEEELLEIKGlleeKREQL 669
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQL--KELEEKLKKYN-----LEELEKKAEEY----EKLKEKLIKLKG----EIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 670 KKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDs 749
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK- 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 750 imiLQTQLDSA-------------IQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ 816
Cdd:PRK03918 624 ---LEEELDKAfeelaetekrleeLRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570 580
....*....|....*....|....*...
gi 1720428051 817 ERKaqleDEIAAYEERMKKLNMELKKLQ 844
Cdd:PRK03918 701 EEL----EEREKAKKELEKLEKALERVE 724
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
280-917 |
7.11e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 7.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 280 QETLKRLSEVWQKVSEQDDLIQELRNKLacsNSLVLEREEAL--IKLQAEFASYTATHRHpptssedceditKILKHLQE 357
Cdd:COG1196 175 EEAERKLEATEENLERLEDILGELERQL---EPLERQAEKAEryRELKEELKELEAELLL------------LKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 358 QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCV---IEKKDKETVFLQYRLQDLQQQYT 434
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELlaeLARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 435 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKlqcttkeldtsLQEARQstskidcEALRAEIQKLKDS 514
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE-----------AEEALL-------EAEAELAEAEEEL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 515 LEEAREQLKVSDQNLTQSKEEAHLsASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQE 594
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEEL-EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 595 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 674
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 675 QEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSI 750
Cdd:COG1196 536 YEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 751 MILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYE 830
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT---LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 831 ERMKKLNMELKKLQgfqqqseqevhnfdkklEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEP 910
Cdd:COG1196 693 LELEEALLAEEEEE-----------------RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
....*..
gi 1720428051 911 YSPPAKL 917
Cdd:COG1196 756 LPEPPDL 762
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-909 |
8.69e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 8.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 352 LKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREE---TSCVIEKKDKETVFLQYRLQD 428
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 429 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEI 508
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE-----QLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 509 QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQ-----KEEVIKDLQSQLHKLQKESSKIEE 583
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeleeLEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 584 ERKHNRQRLQELSSELSEGQRRL-----------------SNAEKEKSL-----------------------------LQ 617
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLdslerlqenlegfsegvKALLKNQSGlsgilgvlselisvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 618 KTLDEDEKKIDELFHS--------------TQVSEQKQRELTNSIRK-----------LEEELLEIKGLLE--------- 663
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFlkqnelgrvtflplDSIKGTEIQGNDREILKniegflgvakdLVKFDPKLRKALSyllggvlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 664 ---------------------------------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKM-- 696
Cdd:TIGR02168 629 ddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKEle 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 697 -AKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKE 775
Cdd:TIGR02168 709 eLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 776 AyeelvrKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 855
Cdd:TIGR02168 789 A------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1720428051 856 NFDKKLEEMsnqvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 909
Cdd:TIGR02168 863 ELEELIEEL-------ESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
463-846 |
1.98e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 1.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 463 QVQNSLREKEAELEKLQCTTKELDTSLQearqstsKIDCEALRAEI-QKLKDSLEEAreqlkvsdqnltqskeEAHLSAS 541
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLK-------SLERQAEKAERyKELKAELREL----------------ELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 542 SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQkesskieeerkhnrqrlqelsSELSEGQRRLSNAEKEKSLLQKTLD 621
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELE---------------------EKLEELRLEVSELEEEIEELQKELY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 622 EDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAK 698
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 699 EHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiQKEKNCFQNMVSKEAYE 778
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-ELKELQAELEELEEELE 450
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 779 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 846
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-903 |
5.44e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 5.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 352 LKHLQEQKDSQclhvEEYQNLVKDLR--------MELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQ 423
Cdd:COG1196 202 LEPLERQAEKA----ERYRELKEELKeleaelllLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 424 YRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEA 503
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE-----ELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 504 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 583
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 584 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLE 663
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 664 EKREQLKKS----------------KEQEKALEEEIEALRQEAKRKE----KMAKEHLRKLDEEKENLQAELTSRSSHLD 723
Cdd:COG1196 509 GVKAALLLAglrglagavavligveAAYEAALEAALAAALQNIVVEDdevaAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 724 SSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATS 803
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 804 ETKSLNRSLQQTQE----RKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 879
Cdd:COG1196 669 ELLAALLEAEAELEelaeRLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*...
gi 1720428051 880 KMLAAKESQ----LREFQEEMATLRESL 903
Cdd:COG1196 749 EEEALEELPeppdLEELERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
541-909 |
1.19e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.96 E-value: 1.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 541 SSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE----ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLL 616
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 617 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKL-EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEalrqEAKRKEK 695
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELE----DAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 696 MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIarqkdsimilqtqldsaiqkekncfqnmvske 775
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-------------------------------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 776 ayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVH 855
Cdd:TIGR02169 374 --EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1720428051 856 NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 909
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
463-751 |
1.76e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 463 QVQNSLREKEAELEKLQCTTKELdtslqearqstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASS 542
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEEL------------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 543 LEDAHRKIENCLLQ-------DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL 615
Cdd:TIGR02168 735 LARLEAEVEQLEERiaqlskeLTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 616 LQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRkek 695
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL--- 891
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428051 696 mAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIM 751
Cdd:TIGR02168 892 -LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-920 |
9.78e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 9.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 195 KSTGEKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLEcQVKMLEGELSGLIGQDPENKgdhpkvriytspc 274
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKA-ELRELELALLVLRLEELREE------------- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 275 vIQEHQETLKRLSevwQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAthrhpptsseDCEDITKILKH 354
Cdd:TIGR02168 241 -LEELQEELKEAE---EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----------EISRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 355 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYT 434
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE----LEELEAELEELESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 435 ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDS 514
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 515 LEEAREQLKVSDQNLTQSKEEAHLSAS------SLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL-------------- 574
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQArldsleRLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaieaa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 575 ----------------------QKESSK----IEEERKHNRQRLQELSSELSEGQRR----LSNAEKEKSLLQKTLD--- 621
Cdd:TIGR02168 543 lggrlqavvvenlnaakkaiafLKQNELgrvtFLPLDSIKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSyll 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 622 -------------EDEKKID----------ELFHSTQVSEQKQRELTNS-------IRKLEEELLEIKGLLEEKREQLKK 671
Cdd:TIGR02168 623 ggvlvvddldnalELAKKLRpgyrivtldgDLVRPGGVITGGSAKTNSSilerrreIEELEEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 672 SKEQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 748
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 749 SIMILQTQLDSAIQkekncfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAA 828
Cdd:TIGR02168 783 EIEELEAQIEQLKE------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 829 YEERMK-------KLNMELKKLQGFQQQSEQEVH-------NFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQE 894
Cdd:TIGR02168 857 LAAEIEeleelieELESELEALLNERASLEEALAllrseleELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
810 820
....*....|....*....|....*.
gi 1720428051 895 EMATLRESLLADEKEPYSPPAKLTPK 920
Cdd:TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALENK 962
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-908 |
5.64e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.17 E-value: 5.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 340 TSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKET 419
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 420 VfLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVqNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI 499
Cdd:PRK03918 242 E-LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 500 DCEA--LRAEIQKLKDSLEEAREqLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-LLQDKQKEEVIKDLQSQLHKLQK 576
Cdd:PRK03918 320 EEEIngIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEAKAKKEELeRLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 577 ESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKS---LLQKTLDEDEKK--IDELFHSTQVSEQKQRELTNSIRKL 651
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 652 EEELLEIKGLLEEKRE--QLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKY 729
Cdd:PRK03918 479 RKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKS----LKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 730 NSSQKVIQELNAEIARQKDSIMILQTQLdsaiqkekncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLN 809
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKEL--------------------EELGFESVEELEERLKELEPFYNEYLELKDAE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 810 RSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfqQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQL 889
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
570
....*....|....*....
gi 1720428051 890 REFQEEMATLRESLLADEK 908
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
448-907 |
5.93e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.15 E-value: 5.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKL--------------KD 513
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL--ETLEAEIEDLretiaeterereelAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 514 SLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCllqDKQKEEV----------IKDLQSQLHKLQKESSKIEE 583
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELrdrleecrvaAQAHNEEAESLREDADDLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 584 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID---------ELFHSTQVSE-----QKQRELTNSIR 649
Cdd:PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGdapvdlgnaEDFLEELREErdelrEREAELEATLR 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 650 KLEEELLEIKGLLE---------------------EKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAK--EHLRKLDE 706
Cdd:PRK02224 437 TARERVEEAEALLEagkcpecgqpvegsphvetieEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEaeDRIERLEE 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 707 EKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELvrksg 785
Cdd:PRK02224 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAElKERIESL----- 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 786 ncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-----LKKLQGFQQQSEQEVHNFDKK 860
Cdd:PRK02224 592 ---ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEK 668
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1720428051 861 LEEMSNQvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADE 907
Cdd:PRK02224 669 LDELREE----RDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
558-902 |
6.25e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 6.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvs 637
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL------- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 638 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI--EALRQEAKRKEKMAKEHlRKLDEEKENLQAEL 715
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEV-SRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 716 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDS--AIQKEKNCFQNMVSKEaYEELVRKSGNCQDDLTQ 793
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEleEELEELEAALRDLESR-LGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 794 ALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKL------NMELKKLQGFQQQSEQEVHNF---DKKLEEM 864
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeipeeELSLEDVQAELQRVEEEIRALepvNMLAIQE 980
|
330 340 350
....*....|....*....|....*....|....*...
gi 1720428051 865 SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRES 902
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
275-715 |
7.34e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.15 E-value: 7.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 275 VIQEHQETLKRLSEVWQKV-----------SEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTAThrhpptsSE 343
Cdd:PRK02224 242 VLEEHEERREELETLEAEIedlretiaeteREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV-------EA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 344 DCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLRE---ETSCVIEKKDKETV 420
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREaveDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 421 FLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKID 500
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG-----QPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 501 CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKE--EAHLSASSLEDAHRKIENCLlqdKQKEEVIKDLQSQLHKLQKES 578
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELI---AERRETIEEKRERAEELRERA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 579 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseQKQRELTNSIRKLEEELLEI 658
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL--------AAIADAEDEIERLREKREAL 618
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428051 659 KGLLEEKREQLKKSKEQEKALEEE-----IEALRQEAKRKEKM---AKEHLRKLDEEKENLQAEL 715
Cdd:PRK02224 619 AELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYleqVEEKLDELREERDDLQAEI 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
594-913 |
8.56e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 8.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 594 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 673
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 674 EQEKALEEEIEALRQEAKRKEkmakEHLRKLDEEKENLQAELtsrsshldsslnkynsSQKVIQELNAEIARQKDSIMIL 753
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL----------------SHSRIPEIQAELSKLEEEVSRI 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 754 QTQLDSAIQKEKncfqnmvskeayeelvrksgncqdDLTQALEKLTQATSETKSLNRSLqqtQERKAQLEDEIAAYEERM 833
Cdd:TIGR02169 811 EARLREIEQKLN------------------------RLTLEKEYLEKEIQELQEQRIDL---KEQIKSIEKEIENLNGKK 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 834 KKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSP 913
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
639-997 |
4.69e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 4.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 639 QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEaLRQEAKRKEK-MAKEHLRKLDEEKENLQAELTS 717
Cdd:TIGR02168 172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELELaLLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 718 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayEELVRKSGNCQDDLTQALEK 797
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK------QILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 798 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQvlqwQRQHQS 877
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 878 DLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQ 957
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1720428051 958 VKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 997
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
588-844 |
4.79e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 70.33 E-value: 4.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 588 NRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS--EQKQRELTNSIRKLEEELLEIK---GLL 662
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIAELEAELERLDassDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 663 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNsSQKVIQELNAE 742
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 743 IARQkdsimiLQTQLDSAIQKEKNCFQNMVS-----KEAYEELVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSL 812
Cdd:COG4913 767 LREN------LEERIDALRARLNRAEEELERamrafNREWPAETADLDADLESLPEYLALLDRLEEDglpeyEERFKELL 840
|
250 260 270
....*....|....*....|....*....|....*..
gi 1720428051 813 QQTQERK-----AQLEDEIAAYEERMKKLNMELKKLQ 844
Cdd:COG4913 841 NENSIEFvadllSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
649-997 |
7.29e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 7.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 649 RKLE---EELLEIKGLLEEKREQLKKSKEQ-EKAleEEIEALRQEAKRKEKMAK-EHLRKLDEEKENLQAELTSRSSHLD 723
Cdd:COG1196 179 RKLEateENLERLEDILGELERQLEPLERQaEKA--ERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 724 SSlnkynssQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfqnmvsKEAYEELVRKSGNCQDDLTQALEKLTQATS 803
Cdd:COG1196 257 EL-------EAELAELEAELEELRLELEELELELEEA-------------QAEEYELLAELARLEQDIARLEERRRELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 804 EtkslnrsLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLA 883
Cdd:COG1196 317 R-------LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 884 AKESQLREFQEEMATLRESLLADEKEpysppakltpketcRHHRENDQIMNNVEQWAKEQKIANEKLgnKLREQVKYIAK 963
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLER--------------LERLEEELEELEEALAELEEEEEEEEE--ALEEAAEEEAE 453
|
330 340 350
....*....|....*....|....*....|....
gi 1720428051 964 LTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 997
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
503-713 |
1.13e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.87 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 503 ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 582
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 583 EERKHNRQRLQEL------------------SSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREL 644
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 645 TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 713
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
451-993 |
1.29e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.94 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 451 DERLHELEKNLM---QVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQ 527
Cdd:PRK03918 175 KRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPELREELEKL--EKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 528 NLTQSKEEAHLSASSLEDAHRKIENclLQDKQKE-EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 606
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE--LEEKVKElKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 607 SNAEKEKSLLQKT---LDEDEKKIDELFHSTQVSEqKQRELTNSIRKLEEELL-----EIKGLLEEKREQLKKSKEQEKA 678
Cdd:PRK03918 331 KELEEKEERLEELkkkLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 679 LEEEIEALRQEAKRKEKmAKEHLRKLDEEKENLQAELTsrSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLD 758
Cdd:PRK03918 410 ITARIGELKKEIKELKK-AIEELKKAKGKCPVCGRELT--EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 759 SAIQKEKNCFQNMVSKEAYEELVRK-SGNCQDDLTQA-------LEKLTQATSETKSLNRSLQQTQE---RKAQLEDEIA 827
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKlKKYNLEELEKKaeeyeklKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 828 AYEERMKKLNMELKKLqGFqqQSEQEVHNFDKKLEEMSNQVLQwqrqhqsdlkmLAAKESQLREFQEEMATLRESLLADE 907
Cdd:PRK03918 567 ELEEELAELLKELEEL-GF--ESVEELEERLKELEPFYNEYLE-----------LKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 908 KEPYSPPAKLtpkETCRHHRENDQIMNNVEQWakeqkianEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKN 987
Cdd:PRK03918 633 EELAETEKRL---EELRKELEELEKKYSEEEY--------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
....*.
gi 1720428051 988 EIEEKK 993
Cdd:PRK03918 702 ELEERE 707
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-760 |
1.46e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.48 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 536 AHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL 615
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 616 LQKTLDEDEKKIDELFHSTQVSEQKQREL----TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 691
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 692 RKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSA 760
Cdd:COG4942 175 ELEALLAE----LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
622-909 |
1.93e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 1.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 622 EDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKK-SKEQEKALE-EEIEALRQEAKRKEKMAKe 699
Cdd:TIGR02169 154 ERRKIIDEIAGVAEFDRKKEKAL-EELEEVEENIERLDLIIDEKRQQLERlRREREKAERyQALLKEKREYEGYELLKE- 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 700 hLRKLDEEKENLQAELTSRSSHLDsslnkynSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS--KEAY 777
Cdd:TIGR02169 232 -KEALERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGelEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 778 EELVRKSGNCQDDLTQALEKLTQATSE-------TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS 850
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEidkllaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720428051 851 EQEVHNFDKKLEEMSNQV-------------LQWQRQHQSDLKM-LAAKESQLREFQEEMATLRESLLADEKE 909
Cdd:TIGR02169 384 RDELKDYREKLEKLKREInelkreldrlqeeLQRLSEELADLNAaIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
453-717 |
4.29e-11 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 67.07 E-value: 4.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 453 RLHELEKNLMQVQNSLREKEAELEKLQcttkeldtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 532
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRAR--------IELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 533 KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 612
Cdd:pfam05557 75 AELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 613 KSLL---QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE--ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 687
Cdd:pfam05557 155 RQNLekqQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARipELEKELERLREHNKHLNENIENKLLLKEEVEDLK 234
|
250 260 270
....*....|....*....|....*....|
gi 1720428051 688 QEAKRKEKMaKEHLRKLDEEKENLQAELTS 717
Cdd:pfam05557 235 RKLEREEKY-REEAATLELEKEKLEQELQS 263
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
412-903 |
5.17e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 5.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 412 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSL----------REKEAELEKLQCT 481
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlkkkiqknKSLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 482 TKELDTSLQEARQSTSKIDCEALRAE--IQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsaSSLEDAHRKIENCL--LQD 557
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQtqLNQLKDEQNKIKKQLSEKQKELEQNNKKI----KELEKQLNQLKSEIsdLNN 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS 637
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 638 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEaKRKEKMAKEHLRKLDEEKENLQAELTS 717
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 718 RSSHLdsslnkynssQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMvskeayeelvrksgncqddlTQALEK 797
Cdd:TIGR04523 462 TRESL----------ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK--------------------KELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 798 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKlqgfqQQSEQEVHNFDKKLEEMSNQ---VLQWQRQ 874
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTqksLKKKQEE 586
|
490 500
....*....|....*....|....*....
gi 1720428051 875 HQSDLKMLAAKESQLREFQEEMATLRESL 903
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-804 |
5.74e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 5.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 140 ELEFRTQELQASYCSLLQYQSILEKQTSDLLVLHRHCKLKEDEVILYEEEMGNHSKSTGEKLHLAQEQLALAGDKILSLE 219
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 220 RSLNLYRDKYQ---------------------------TSLSN-IELLECQVKMLEGELSGLIGQDPENKGDHPKVRIY- 270
Cdd:TIGR02168 358 AELEELEAELEelesrleeleeqletlrskvaqlelqiASLNNeIERLEARLERLEDRRERLQQEIEELLKKLEEAELKe 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 271 ---TSPCVIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLE---REEALIKLQAEFASYTATHRHPPTSSED 344
Cdd:TIGR02168 438 lqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqaRLDSLERLQENLEGFSEGVKALLKNQSG 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 345 CEDITKILKHL--QEQKDSQCLHV---EEYQNLV-KDLRMELEAVSEQKKKIMKDMMKLELDL----------------- 401
Cdd:TIGR02168 518 LSGILGVLSELisVDEGYEAAIEAalgGRLQAVVvENLNAAKKAIAFLKQNELGRVTFLPLDSikgteiqgndreilkni 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 402 HGLREETSCVIEKKDKETVFLQYRLQDLQ-----QQYTESQKLSLKKDKLLQDKDERLH----------ELEKNLMQVQN 466
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddlDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 467 SLREKEAELEKLQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSD---QNLTQSKEEAHLSAS 541
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELeeELEQLRKELEELSRQISALRKDLARLEaevEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 542 SLED----AHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQ 617
Cdd:TIGR02168 758 ELEAeieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 618 KTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKmA 697
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR-E 916
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 698 KEHLRKLDEEKENLQAELTSRSSHLDSSLN-KYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCfqNMVSKEA 776
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQERLSeEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV--NLAAIEE 994
|
730 740 750
....*....|....*....|....*....|.
gi 1720428051 777 YEELV-RKS--GNCQDDLTQALEKLTQATSE 804
Cdd:TIGR02168 995 YEELKeRYDflTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
123-903 |
7.92e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 7.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 123 HLRQLQQLKKKLLTLQQELEFRTQELQAsycsllqyqsilekqtsdllvlhrhcKLKEDEVILYEEEmgnhskstgEKLH 202
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEE--------------------------KLEELRLEVSELE---------EEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 203 LAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSgligqdpenkgdhpkvriytspCVIQEHQET 282
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD----------------------ELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 283 LKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASytathrhpptssedceditkilkhLQEQKDSQ 362
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------------------------LELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 363 CLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR-EETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSL 441
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 442 KKDKLLQDKDERLHELEKNLMQVQNSLRE-KEAELEKLQCT----------------TKELDTSLQEARQSTSKIDCEAL 504
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGvKALLKNQSGLSgilgvlselisvdegyEAAIEAALGGRLQAVVVENLNAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 505 RAEIQKLKDSLEEAR----------EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL 574
Cdd:TIGR02168 559 KKAIAFLKQNELGRVtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 575 -------------------------------------QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQ 617
Cdd:TIGR02168 639 kklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 618 KTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKE--- 694
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeel 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 695 KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfqnmvsK 774
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL-------------E 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 775 EAYEELvrksgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEV 854
Cdd:TIGR02168 866 ELIEEL-------ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1720428051 855 HNFDKKLEEmsnqvlQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 903
Cdd:TIGR02168 939 DNLQERLSE------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
422-655 |
9.86e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.79 E-value: 9.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 422 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidc 501
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE---------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 502 eaLRAEIQKLKDSLeeaREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 581
Cdd:COG4942 95 --LRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428051 582 EEErkhnRQRLQELSSELSEGQRRLSNAEKEKsllQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 655
Cdd:COG4942 170 EAE----RAELEALLAELEEERAALEALKAER---QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
448-997 |
1.00e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSD- 526
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKAD-----ELKKAEEKKKADEAKKAEEKKKADEa 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 527 QNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 606
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 607 SNAEKEKSLlQKTLDEDEKKIDELfHSTQVSEQKQREL---TNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEEI 683
Cdd:PTZ00121 1388 EEKKKADEA-KKKAEEDKKKADEL-KKAAAAKKKADEAkkkAEEKKKADE--------AKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 684 EALRQEAKRKEKMAKEHLRKLDEEK---ENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDsimilqtQLDSA 760
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAkkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD-------EAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 761 IQKEKNCFQNMVSKEAYEELVRKSGNCQ--DDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNM 838
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 839 ELKKLQGFQQQSEQEvhnfdKKLEEMSNQVLQWQRQHQSDLKmlaaKESQLREFQEEMATLRESLLADEKEpysppaKLT 918
Cdd:PTZ00121 1611 EAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEE------DKK 1675
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 919 PKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAG 997
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
426-863 |
1.26e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 426 LQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIdcEALR 505
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK---KENQSYKQEIKNLESQI--NDLE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 506 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER 585
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 586 KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEK 665
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL-------KEKIEKLESEKKEKESKISDLEDELNKD 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 666 REQLKKS--KEQEKALEEEIEALRQE---AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELN 740
Cdd:TIGR04523 551 DFELKKEnlEKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 741 AEIARQKDSIMILQTQLDS---AIQKEKNCFQNMVSKEayEELVRKSgncqDDLTQALEKLTQATSETKSLNRSLQQTQE 817
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQikeTIKEIRNKWPEIIKKI--KESKTKI----DDIIELMKDWLKELSLHYKKYITRMIRIK 704
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1720428051 818 RKAQLEdeiaayeERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEE 863
Cdd:TIGR04523 705 DLPKLE-------EKYKEIEKELKKLDEFSKELENIIKNFNKKFDD 743
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
500-713 |
2.66e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.94 E-value: 2.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 500 DCEALRAEIQKLKDS---LEEAREQLKVsdqnLTQSKE--EAHLSASSLEDAHRKIENcLLQDKQKEEVIKDLQSQLHKL 574
Cdd:COG4913 226 AADALVEHFDDLERAheaLEDAREQIEL----LEPIRElaERYAAARERLAELEYLRA-ALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 575 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE-KEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEE 653
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEER-------ERRRARLEALLAALGL 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 654 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 713
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
520-909 |
4.26e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 4.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 520 EQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEER---KHNRQRLQELS 596
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 597 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELtNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 676
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 677 KALEEEIEALRQEAKRKEKMaKEHLRKLDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKD-SIMILQT 755
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRL----EELEERHELYEEAKAKKEELERLKKRLTGlTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 756 QLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQD---DLTQALEKLTQATSETKSLNRSLqqTQERKAQLedeIAAYEER 832
Cdd:PRK03918 392 ELEELEKAKEEI------EEEISKITARIGELKKeikELKKAIEELKKAKGKCPVCGREL--TEEHRKEL---LEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 833 MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSN-----QVLQWQRQHQSDLKMLAAKEsqLREFQEEMATLRESLLADE 907
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkELAEQLKELEEKLKKYNLEE--LEKKAEEYEKLKEKLIKLK 538
|
..
gi 1720428051 908 KE 909
Cdd:PRK03918 539 GE 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-804 |
5.11e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 174 RHCKLKEDEVILYEEEMGNHSKSTGEKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGL 253
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 254 IGQ--DPENKGDHPKVRiytspcvIQEHQETLKRLSEVWQKVSEQDDL----IQELRNKLACSNSLVLEREEALIKLQAE 327
Cdd:COG1196 294 LAElaRLEQDIARLEER-------RRELEERLEELEEELAELEEELEEleeeLEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 328 FASYTATHRhpptssEDCEDITKILKHLQEQKDSQclhvEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREE 407
Cdd:COG1196 367 LLEAEAELA------EAEEELEELAEELLEALRAA----AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 408 TScVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT 487
Cdd:COG1196 437 EE-EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 488 SLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDL 567
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 568 QSQLHKLQKESSKIEEERKhnRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 647
Cdd:COG1196 596 AIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 648 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLN 727
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 728 KYNSSQKVIQELNAEIARqkdsimiLQTQLDS--AIqkekncfqNMVSKEAYEE-------LVRKsgncQDDLTQALEKL 798
Cdd:COG1196 754 EELPEPPDLEELERELER-------LEREIEAlgPV--------NLLAIEEYEEleerydfLSEQ----REDLEEARETL 814
|
....*.
gi 1720428051 799 TQATSE 804
Cdd:COG1196 815 EEAIEE 820
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
523-699 |
1.56e-09 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 61.72 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 523 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 602
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEA------IKKEALLEAKEEIHKLRNE---FEKELRERRNELQKLEKRL--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 603 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEkaLEE 681
Cdd:PRK12704 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLtAEEAKEILLEKVEEE--ARH 169
|
170
....*....|....*...
gi 1720428051 682 EIEALrqeAKRKEKMAKE 699
Cdd:PRK12704 170 EAAVL---IKEIEEEAKE 184
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
595-835 |
1.63e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 595 LSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKE 674
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 675 QEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQ 754
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 755 TQLDSAIQKEKNcfqnmvSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMK 834
Cdd:COG4942 164 ALRAELEAERAE------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 1720428051 835 K 835
Cdd:COG4942 238 A 238
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
564-715 |
5.44e-09 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 58.01 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 564 IKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfHSTQVSEQKQRE 643
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-RNNKEYEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428051 644 LTN---SIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 715
Cdd:COG1579 98 IESlkrRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
450-991 |
6.77e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 6.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 450 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNL 529
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNK-----DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 530 TQSKEEahlsassledahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNA 609
Cdd:TIGR04523 106 SKINSE----------------------------IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 610 EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKRE---QLKKSKEQEKALEEEIEAL 686
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 687 RQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSImilqTQLDSAIQKEKN 766
Cdd:TIGR04523 238 QQE-----------INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL----NQLKSEISDLNN 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 767 CFQNMVSKEAYEELVRKsgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGF 846
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQ----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 847 QQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETC--R 924
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIikN 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 925 HHRENDQIMNNVEQWAKEQKIANEKLGNK---LREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEE 991
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
275-926 |
9.93e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 9.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 275 VIQEHQETLKRLsevwqkVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCedITKILKH 354
Cdd:pfam15921 261 LLQQHQDRIEQL------ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST--VSQLRSE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 355 LQEQKDSQCLHVEEYQ-------NLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDK-------ETV 420
Cdd:pfam15921 333 LREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgNSI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 421 FLQYRLQDLQQQYTESQKLSLKKDKLlqdKDERLHELEKNLMQVQNslreKEAELEKLQCTTKELDTSLQEARQ-----S 495
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRLEALLKAM---KSECQGQMERQMAAIQG----KNESLEKVSSLTAQLESTKEMLRKvveelT 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 496 TSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdKQKEEVIKDLQSQLHKLQ 575
Cdd:pfam15921 486 AKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-----------KNEGDHLRNVQTECEALK 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 576 KESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEEL 655
Cdd:pfam15921 555 LQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEK 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 656 LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEakrkekmakehLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 735
Cdd:pfam15921 635 VKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE-----------LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 736 IQelnAEIARQKDSIMILQTQLDSAIQkekncfqnmVSKEAYEELVRKSGNCqDDLTQALEKLTQATSETkslNRSLQQT 815
Cdd:pfam15921 704 AQ---SELEQTRNTLKSMEGSDGHAMK---------VAMGMQKQITAKRGQI-DALQSKIQFLEEAMTNA---NKEKHFL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 816 QERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW----QRQHQSDLKMLAAKESQLRE 891
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECqdiiQRQEQESVRLKLQHTLDVKE 847
|
650 660 670
....*....|....*....|....*....|....*
gi 1720428051 892 FQEEMATLRESLladekepysPPAKLTPKETCRHH 926
Cdd:pfam15921 848 LQGPGYTSNSSM---------KPRLLQPASFTRTH 873
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
557-763 |
1.02e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 59.26 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 557 DKQKEEVIKDLQSQLHKLQ--KESSKI---EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 631
Cdd:COG3206 181 EEQLPELRKELEEAEAALEefRQKNGLvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 632 HSTQVSEqkqreltnsirkLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRkekMAKEHLRKLDEEKENL 711
Cdd:COG3206 261 QSPVIQQ------------LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEAL 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1720428051 712 QAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQK 763
Cdd:COG3206 326 QAREAS----LQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
690-915 |
1.29e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 58.30 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 690 AKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAiqkekncfq 769
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER--------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 770 nmvsKEAYEELVR---KSGNCQDDLTQAL--EKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 844
Cdd:COG3883 85 ----REELGERARalyRSGGSVSYLDVLLgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 845 GFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPA 915
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
468-844 |
1.39e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.01 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 468 LREKEAELEKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSasSLEDAH 547
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLPLYQELEALEAELA--ELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 548 RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK-HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKK 626
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 627 IDELFHSTQVSEQKQR----------------------ELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 684
Cdd:COG4717 229 LEQLENELEAAALEERlkearlllliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 685 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 764
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 765 KNCFQnmvsKEAYEELVRKSGNCQDDLTQALEKLTQATSETkslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 844
Cdd:COG4717 389 AALEQ----AEEYQELKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELE 459
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
590-832 |
2.60e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 590 QRLQELSSELSEGQRRLSNAEKEKSLLQKtLDEDEKKIDELFhsTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQL 669
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAAR--ERLAELEYLRAALRLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 670 KKSKEQEKALEEEIEALRQEAKRkekmAKEHLRKLD-EEKENLQAEltsrsshldsslnkynssqkvIQELNAEIARQKD 748
Cdd:COG4913 305 ARLEAELERLEARLDALREELDE----LEAQIRGNGgDRLEQLERE---------------------IERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 749 SIMILQTQLDSAiqkeknCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKslnRSLQQTQERKAQLEDEIAA 828
Cdd:COG4913 360 RRARLEALLAAL------GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLRRELRELEAEIAS 430
|
....
gi 1720428051 829 YEER 832
Cdd:COG4913 431 LERR 434
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
485-720 |
3.06e-08 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 57.73 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 485 LDTSLQEARQSTSKIDceaLRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVI 564
Cdd:pfam05667 261 LAGTEATSGASRSAQD---LAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSPPTKVETEEELQQQREEEL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 565 KDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqRRLSNAEKEKSLLQKT-----LDEDEKKIDELFHSTQVSEQ 639
Cdd:pfam05667 338 EELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEE--LKEQNEELEKQYKVKKktldlLPDAEENIAKLQALVDASAQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 640 KQRELTNSIRKLEEELL-EIKGLLEEKREQLKKSK---EQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAEl 715
Cdd:pfam05667 416 RLVELAGQWEKHRVPLIeEYRALKEAKSNKEDESQrklEEIKELREKIKEVAEEAKQKEELYKQ----LVAEYERLPKD- 490
|
....*
gi 1720428051 716 TSRSS 720
Cdd:pfam05667 491 VSRSA 495
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
413-909 |
4.48e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 4.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 413 EKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERL-HELEKNLMQVQNSLREKEAELEKLQCTTKELD--TSL 489
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLtKELEDIKMSLQRSMSTQKALEEDLQIATKTICqlTEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 490 QEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQS 569
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKK 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 570 QL---HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN 646
Cdd:pfam05483 413 ILaedEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTA 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 647 SIRKL---------------------EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLD 705
Cdd:pfam05483 493 HCDKLllenkeltqeasdmtlelkkhQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 706 EEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQlDSAIQKEKNCFQNMVSKEAYEELVRKSG 785
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK-GSAENKQLNAYEIKVNKLELELASAKQK 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 786 NCQDDLTQALEKLTQATSETKslnrSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQqqsEQEVHNFDKKLEEMS 865
Cdd:pfam05483 652 FEEIIDNYQKEIEDKKISEEK----LLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALM---EKHKHQYDKIIEERD 724
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1720428051 866 NQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 909
Cdd:pfam05483 725 SELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
476-811 |
7.31e-08 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 56.83 E-value: 7.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 476 EKLQCTTKELDTSLQEARQSTSKiDCEALRAEIQKlkdsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIE---- 551
Cdd:PLN02939 71 ENGQLENTSLRTVMELPQKSTSS-DDDHNRASMQR-------DEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQnaek 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 552 NCLLQDKQKEEVIKDLQsqlhklqkessKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELF 631
Cdd:PLN02939 143 NILLLNQARLQALEDLE-----------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 632 HSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA---LEEE---IEALRQEAKRKEKMAKEHLRKLD 705
Cdd:PLN02939 212 IRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERvfkLEKErslLDASLRELESKFIVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 706 --------EEKENLQAELTSRSSHLDSS---LNKYNSSQKVIQELNAEIARQKDS------IMILQTQLDSAIQKEKNCF 768
Cdd:PLN02939 292 plqydcwwEKVENLQDLLDRATNQVEKAalvLDQNQDLRDKVDKLEASLKEANVSkfssykVELLQQKLKLLEERLQASD 371
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720428051 769 QNMVSK-EAYEELVRKsgnCQDDLTQALEKltqatSETKSLNRS 811
Cdd:PLN02939 372 HEIHSYiQLYQESIKE---FQDTLSKLKEE-----SKKRSLEHP 407
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
448-903 |
7.41e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREkeaeLEKLQCTTKELDTSLQEARQSTSKIDCEA--LRAEIQKLKDSLEEAREQLKVS 525
Cdd:pfam01576 8 QAKEEELQKVKERQQKAESELKE----LEKKHQQLCEEKNALQEQLQAETELCAEAeeMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 526 -------DQNLTQSKEEAHLSASSLEdAHRKIENCLLQDKQKEEV-----IKDLQSQLHKLQKESSKIEEERKHNRQRLQ 593
Cdd:pfam01576 84 leeeeerSQQLQNEKKKMQQHIQDLE-EQLDEEEAARQKLQLEKVtteakIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 594 ELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK 673
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 674 EQEKALEEEIE---ALRQEAKRKEKMAKEHLRKLDEEKEN--------------LQAELTSRSSHLDSSLNKYNSSQKVI 736
Cdd:pfam01576 243 EELQAALARLEeetAQKNNALKKIRELEAQISELQEDLESeraarnkaekqrrdLGEELEALKTELEDTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 737 QELNAEIARQKDSI----MILQTQLDSAIQKEKNCFQNMvsKEAYEELVRKSGNCQ----------DDLTQALEKLTQAT 802
Cdd:pfam01576 323 SKREQEVTELKKALeeetRSHEAQLQEMRQKHTQALEEL--TEQLEQAKRNKANLEkakqalesenAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 803 SET----KSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSD 878
Cdd:pfam01576 401 QDSehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
490 500
....*....|....*....|....*
gi 1720428051 879 LKMLAAKESQLREFQEEMATLRESL 903
Cdd:pfam01576 481 TRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-690 |
8.85e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 8.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 341 SSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscviekkdketv 420
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA------------- 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 421 flqyrLQDLQQQYTESQklslkkdkllqdkderlheleknlmqvqnsLREKEAELEKLQCTTKELDTSLQEARQSTSK-- 498
Cdd:TIGR02169 781 -----LNDLEARLSHSR------------------------------IPEIQAELSKLEEEVSRIEARLREIEQKLNRlt 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 499 IDCEALRAEIQKLKDSLEEAREQLKvsdqnltQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKES 578
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIK-------SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 579 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQReLTNSIRKLE------ 652
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR-VEEEIRALEpvnmla 977
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1720428051 653 ----EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEA 690
Cdd:TIGR02169 978 iqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
276-686 |
9.06e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 9.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 276 IQEHQETLKRLSEVWQKVSEQDDLIQE----LRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCEDItki 351
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF--- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 352 LKHLQEQKDsqclhveEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETS---CVIEKKDKETVFLQYRLQD 428
Cdd:PRK02224 414 LEELREERD-------ELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSphvETIEEDRERVEELEAELED 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 429 LQQQYT------ESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARqstskidce 502
Cdd:PRK02224 487 LEEEVEeveerlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR--------- 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 503 alrAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassleDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIE 582
Cdd:PRK02224 558 ---EAAAEAEEEAEEAREEVAELNSKLAELKERI--------ESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 583 EERKHNRQRLQELSSELSEGqrRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLL 662
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEA--RIEEAREDKERAEEYLEQVEEKLDEL-------REERDDLQAEIGAVENELEELEELR 697
|
410 420
....*....|....*....|....
gi 1720428051 663 EEkREQLKKSKEQEKALEEEIEAL 686
Cdd:PRK02224 698 ER-REALENRVEALEALYDEAEEL 720
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
561-734 |
1.10e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.22 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 561 EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDE----------- 629
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErreelgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 630 -------------LFHSTQVSE-----QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK 691
Cdd:COG3883 95 lyrsggsvsyldvLLGSESFSDfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1720428051 692 RKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 734
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
557-868 |
1.22e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 55.70 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 557 DKQKEEVIKDLQsQLHKLQKESSKIEEERKHNRqRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE-DEKKIDELfhstq 635
Cdd:PRK05771 15 KSYKDEVLEALH-ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvSVKSLEEL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 636 vseqkqreltnsIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALrqeakrkekmakEHLRKLDEEKENLQael 715
Cdd:PRK05771 88 ------------IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL------------EPWGNFDLDLSLLL--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 716 tsRSSHLDS-----SLNKYNSSQKVIQELNAEIARQKdsimilqtqldsaiqKEKNCFQNMVSKEAYEELvrksgncqDD 790
Cdd:PRK05771 141 --GFKYVSVfvgtvPEDKLEELKLESDVENVEYISTD---------------KGYVYVVVVVLKELSDEV--------EE 195
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 791 LTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNmelKKLQGFQQQSEQEVHNFDKKLEEMSNQV 868
Cdd:PRK05771 196 ELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELA---KKYLEELLALYEYLEIELERAEALSKFL 270
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
499-675 |
1.92e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 55.25 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 499 IDCEALRAEIQKLKdSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkiencllqdkQKEEVIKDLQSQLHKLQKES 578
Cdd:COG2433 363 VDRDEVKARVIRGL-SIEEALEELIEKELPEEEPEAEREKEHEERELT------------EEEEEIRRLEEQVERLEAEV 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 579 SKIEEERKHNRQRLQELSSELSEGQRR----------LSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNsI 648
Cdd:COG2433 430 EELEAELEEKDERIERLERELSEARSEerreirkdreISRLDREIERLERELEEERERIEEL-------KRKLERLKE-L 501
|
170 180
....*....|....*....|....*....
gi 1720428051 649 RKLE--EELLEIKGLLEEKREQLKKSKEQ 675
Cdd:COG2433 502 WKLEhsGELVPVKVVEKFTKEAIRRLEEE 530
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
452-698 |
2.43e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 54.93 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELekNLMQVQNSLREKEAEleklqcttkeldtSLQEARqstskidceALRAEIQKLKDSLEEAREQLKVSDqnltq 531
Cdd:PRK05771 23 EALHEL--GVVHIEDLKEELSNE-------------RLRKLR---------SLLTKLSEALDKLRSYLPKLNPLR----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 532 sKEEAHLSASSLEDAHRKIENCLLQDkqkEEVIKDLQSQLHKLQKESSKIEEERKhNRQRLQELSSELSEGQR------- 604
Cdd:PRK05771 74 -EEKKKVSVKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIE-RLEPWGNFDLDLSLLLGfkyvsvf 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 605 --RLSNAEKEKSLLQK--------------------TLDEDEKKIDELFHSTQVSEQK---QRELTNSIRKLEEELLEIK 659
Cdd:PRK05771 149 vgTVPEDKLEELKLESdvenveyistdkgyvyvvvvVLKELSDEVEEELKKLGFERLEleeEGTPSELIREIKEELEEIE 228
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1720428051 660 GLLEEKREQLKKSKEQE----KALEEEIEALRQEAKRKEKMAK 698
Cdd:PRK05771 229 KERESLLEELKELAKKYleelLALYEYLEIELERAEALSKFLK 271
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
571-982 |
2.61e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 571 LHKLQKESSKIEEERKHNRQrLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKID--ELFHSTQVSEQKQRELTNSI 648
Cdd:COG4717 70 LKELKELEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 649 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNK 728
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 729 YNS--SQKVIQELNAEIARQKDSIMILQTQL----------------------------DSAIQKEKNCFQNMVSKEAYE 778
Cdd:COG4717 229 LEQleNELEAAALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgllaLLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 779 ELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMkklnmelkKLQGFQQQSEQEVHNFD 858
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--------QLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 859 KKLEEMSNQVLQWQRQHQSDLKMLAAKESQLRE----FQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMN 934
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1720428051 935 NVEQWAKEQKIAN-----EKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQEN 982
Cdd:COG4717 461 ELEQLEEDGELAEllqelEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
612-753 |
2.68e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 54.86 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 612 EKSLLQKTLDEDEKKIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKskeqekaLEEEIEALRQ 688
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEereLTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIER-------LERELSEARS 455
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428051 689 EAKRKEKMAKEhLRKLDEEKENLQAELtsrsshldsslnkyNSSQKVIQELNAEIARQKDSIMIL 753
Cdd:COG2433 456 EERREIRKDRE-ISRLDREIERLEREL--------------EEERERIEELKRKLERLKELWKLE 505
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
275-895 |
2.81e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.97 E-value: 2.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 275 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLA-CSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDCE-DITKIL 352
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRArIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEqQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 353 KHLQEQKDSQCLHVEEYQNLVKDlrmelEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQyRLQDLQQQ 432
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQ-----QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ-HIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 433 YTESQKLSLKKDKLLQDKDERLHELEKnLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEAlRAEIQKLK 512
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDT-RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE-KIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 513 DSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQKEEVIK 565
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcgscihpnparqdidnpgpltRRMQRGEQTYAQLETSEE 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 566 DLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT 645
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 646 NSIRK------LEEELLEIKGLLEEKREQLKKSKEQEKAL-----EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 714
Cdd:TIGR00618 626 DLQDVrlhlqqCSQELALKLTALHALQLTLTQERVREHALsirvlPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 715 LTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsAIQKEKNCFQNMVSKEAYEELVRksgncqddLTQA 794
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVTA--------ALQT 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 795 LEKLTQATSETKSLNRSLQQTQERKAQLEDEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ 874
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEI---GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
650 660
....*....|....*....|.
gi 1720428051 875 HQSDLKMLAAKESQLREFQEE 895
Cdd:TIGR00618 854 YEECSKQLAQLTQEQAKIIQL 874
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
468-712 |
4.20e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 4.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 468 LREKEAELEKLQCTTK-ELDTSLQEARQSTSKIDCEALR-AEIQKLKDSLEEAREQLKVSDQnltQSKEEAHLSASSLED 545
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKaEEAKKADEAKKAEEAKKADEAKkAEEKKKADELKKAEELKKAEEK---KKAEEAKKAEEDKNM 1578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 546 AHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHN----------RQRLQELSSELSEGQRRLSNAEKE--- 612
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaeelkkaeeeKKKVEQLKKKEAEEKKKAEELKKAeee 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 613 ----KSLLQKTLDEDEKKIDELfhstQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKAlEEEIEALRQ 688
Cdd:PTZ00121 1659 nkikAAEEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAE 1733
|
250 260
....*....|....*....|....*..
gi 1720428051 689 EAKRK---EKMAKEHLRKLDEEKENLQ 712
Cdd:PTZ00121 1734 EAKKEaeeDKKKAEEAKKDEEEKKKIA 1760
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
620-853 |
4.71e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.30 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 620 LDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKE 699
Cdd:COG3883 18 IQAKQKELSEL-------QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 700 HLRKLDEEKEN---LQAELTSRSshLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmvskea 776
Cdd:COG3883 91 RARALYRSGGSvsyLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL------------ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 777 yEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQE 853
Cdd:COG3883 157 -AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
448-687 |
5.79e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkelDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 527
Cdd:PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALK------DDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 528 NL----TQS-KEEAHLSASSLEDAhrKIENCLLQDKQKEEVIKDlqSQLHKLQKESSKIEEERKHNRQRLQ--ELSSELS 600
Cdd:PRK11281 150 QLvslqTQPeRAQAALYANSQRLQ--QIRNLLKGGKVGGKALRP--SQRVLLQAEQALLNAQNDLQRKSLEgnTQLQDLL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 601 EGQRRLSNA-----EKEKSLLQ-----KTLDEDEKKIDELfhstQVSEQKQRELTNSI--------RKLEEELLEIKGLL 662
Cdd:PRK11281 226 QKQRDYLTAriqrlEHQLQLLQeainsKRLTLSEKTVQEA----QSQDEAARIQANPLvaqeleinLQLSQRLLKATEKL 301
|
250 260 270
....*....|....*....|....*....|..
gi 1720428051 663 EE-------KREQLKKSKEQEKALEEEIEALR 687
Cdd:PRK11281 302 NTltqqnlrVKNWLDRLTQSERNIKEQISVLK 333
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
518-717 |
7.35e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 7.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 518 AREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSS 597
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 598 ELSEGQRRLSNAEkekSLLQ-KTLDEDekkIDELFHSTQVSEQkQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQE 676
Cdd:COG3883 94 ALYRSGGSVSYLD---VLLGsESFSDF---LDRLSALSKIADA-DADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1720428051 677 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTS 717
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
541-901 |
8.05e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 8.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 541 SSLEDAHRKIENclLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELS---EGQRRLSNAEKEKSLLQ 617
Cdd:PRK02224 187 GSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 618 KTLDEDEKKIDELfhSTQVSEQKQRELT-----------------------NSIRKLEEELLEIKGLLEEKREQLKKSKE 674
Cdd:PRK02224 265 ETIAETEREREEL--AEEVRDLRERLEEleeerddllaeaglddadaeaveARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 675 QEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDsslnkynssqkviqELNAEIARQKDSIMILQ 754
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAE----LESELEEAREAVEDRREEIE--------------ELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 755 TQLDSAiqkekncfqnmvskEAYEELVRksgncqDDLTQALEKLTQATSETKSLNRSLQQTQERKAQ---------LEDE 825
Cdd:PRK02224 405 VDLGNA--------------EDFLEELR------EERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 826 -----IAAYEERMKKLNMELKKLQGfQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR 900
Cdd:PRK02224 465 phvetIEEDRERVEELEAELEDLEE-EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
.
gi 1720428051 901 E 901
Cdd:PRK02224 544 E 544
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
454-898 |
8.59e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.51 E-value: 8.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 454 LHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKID--------CEALRAEIQKLKDSLEEAREQL--- 522
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvcgSQDEESDLERLKEEIEKSSKQRaml 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 523 ----KVSDQNLTQSKEEAH----------LSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHK-----------LQKE 577
Cdd:TIGR00606 659 agatAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKrrdemlglapgRQSI 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 578 SSKIEEERKHNRQRLQELSSELsegQRRLSNAEKEKSLLQkTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE 657
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKVNRDI---QRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 658 IKGLLEEKREQLKKSKEQEKALE--------EEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKy 729
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHEldtvvskiELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL- 893
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 730 nssQKVIQELNAEIARQKDSIMILQTQLDSAIQK---------EKNCFQNMVSKEAYEELVRKSGNCQDDLTQALE---- 796
Cdd:TIGR00606 894 ---STEVQSLIREIKDAKEQDSPLETFLEKDQQEkeelisskeTSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgkdd 970
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 797 KLTQATSETKSLNRSLQQTQERKAQLEDEIAAY---------EERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEM--- 864
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMrqdidtqkiQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMqvl 1050
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1720428051 865 ---------SNQVLQWQRQHQSDLKMLAAKESQLREFQEEMAT 898
Cdd:TIGR00606 1051 qmkqehqklEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
448-745 |
1.10e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQ----STSKIDCEALRAEIQklkdSLEEAREQLK 523
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIA----ELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 524 VSDQNLTQSKEEAhlsassledahrkiencllqdKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELsselsegQ 603
Cdd:COG4913 682 ASSDDLAALEEQL---------------------EELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL-------Q 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 604 RRLSNAEKEKSLLQKTLdedekkIDELFHS---TQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKS-KEQEKAL 679
Cdd:COG4913 734 DRLEAAEDLARLELRAL------LEERFAAalgDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREwPAETADL 807
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 680 EEEIEALRQEAKRKEKMAKEHL-RKLDEEKENLQAELTSRSSHLDSSLNK-YNSSQKVIQELNAEIAR 745
Cdd:COG4913 808 DADLESLPEYLALLDRLEEDGLpEYEERFKELLNENSIEFVADLLSKLRRaIREIKERIDPLNDSLKR 875
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
558-912 |
1.21e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.77 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLHKLQKESSKIEEER----------------KHNRQRLQELSSELSEGQRRLSNAEKEKSLLQK--- 618
Cdd:COG5022 813 RSYLACIIKLQKTIKREKKLRETEEVEFslkaevliqkfgrslkAKKRFSLLKKETIYLQSAQRVELAERQLQELKIdvk 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 619 -------TLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglLEEKREQLKKSKEQEKALEEEIEALRQEA 690
Cdd:COG5022 893 sisslklVNLELESEIIELKKSLSSDLIENLEfKTELIARLKKLLNNID--LEEGPSIEYVKLPELNKLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 691 KRKEKMAKEH------LRKLDEEKENLQAELTSRSSHLDS---SLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 761
Cdd:COG5022 971 EEYEDLLKKStilvreGNKANSELKNFKKELAELSKQYGAlqeSTKQLKELPVEVAELQSASKIISSESTELSILKPLQK 1050
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 762 QKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME-- 839
Cdd:COG5022 1051 LKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLqe 1130
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 840 ----LKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQR--------QHQSDLKMLAAKESQLREFQEEMATLRESLLADE 907
Cdd:COG5022 1131 iskfLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALpspppfaaLSEKRLYQSALYDEKSKLSSSEVNDLKNELIALF 1210
|
....*
gi 1720428051 908 KEPYS 912
Cdd:COG5022 1211 SKIFS 1215
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
456-879 |
1.69e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.36 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 456 ELEKNLMQVQNSLREKEAE-LEKLQCTTKELD---TSLQEARQSTSKID-----CEALRAEIQKLKDSLEEAREQLKVSD 526
Cdd:PRK10929 27 QITQELEQAKAAKTPAQAEiVEALQSALNWLEerkGSLERAKQYQQVIDnfpklSAELRQQLNNERDEPRSVPPNMSTDA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 527 QNltqskEEAHLSASSLEDAHRKIENclLQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRL 606
Cdd:PRK10929 107 LE-----QEILQVSSQLLEKSRQAQQ--EQDRARE--ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 607 SNAEkekSLLQKTldedekKIDELFHStQVSEQKQRELTnsirKLEEElleikgLLEEKREQLKKskeQEKALEEEIEAL 686
Cdd:PRK10929 178 LQAE---SAALKA------LVDELELA-QLSANNRQELA----RLRSE------LAKKRSQQLDA---YLQALRNQLNSQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 687 RQeakRKEKMAKEHLRKLDEEKENLQAELTSrsshldsslnKYNSSQKVIQELNAEiARQKDSIMILQTQLDSAIQKekn 766
Cdd:PRK10929 235 RQ---REAERALESTELLAEQSGDLPKSIVA----------QFKINRELSQALNQQ-AQRMDLIASQQRQAASQTLQ--- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 767 cfqnmvskeayeelVRksgncqddltQALEKLT---QATSETKSLNRSLQQTQER------KAQLEDEIAayEERMKKLN 837
Cdd:PRK10929 298 --------------VR----------QALNTLReqsQWLGVSNALGEALRAQVARlpempkPQQLDTEMA--QLRVQRLR 351
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1720428051 838 MElkKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDL 879
Cdd:PRK10929 352 YE--DLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRTQREL 391
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
613-839 |
2.39e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 613 KSLLQKTLdedEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKR 692
Cdd:COG4717 44 RAMLLERL---EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 693 KEKMAKehLRKLDEEKENLQAELtsrsSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDsaiqkekncfqnmv 772
Cdd:COG4717 121 LEKLLQ--LLPLYQELEALEAEL----AELPERLEELEERLEELRELEEELEELEAELAELQEELE-------------- 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 773 skeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNME 839
Cdd:COG4717 181 -----ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
558-720 |
2.39e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE----------DEKKI 627
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 628 DELFHSTQVSE------------QKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSK----EQEKALE---EEIEALRQ 688
Cdd:COG3883 106 DVLLGSESFSDfldrlsalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKaeleAAKAELEaqqAEQEALLA 185
|
170 180 190
....*....|....*....|....*....|..
gi 1720428051 689 EAKRKEKMAKEHLRKLDEEKENLQAELTSRSS 720
Cdd:COG3883 186 QLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
366-903 |
2.91e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 366 VEEYQNLVKDLRMELEAVSE----QKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSL 441
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 442 KKDKLLQDKDERLHELEKNLMQVQNSLRE--------KEAELEKL------------------QCTTKELDT--SLQEAR 493
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvdfEEASGKKIyehdsmstmhfrslgsaiSKILRELDTeiSYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 494 QSTSKIDCEALRAE--------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVI 564
Cdd:pfam15921 240 IFPVEDQLEALKSEsqnkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIqEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 565 KDLQSQLHKLQkesSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEK-----------SLLQKTLDEDEKKIDEL-FH 632
Cdd:pfam15921 320 SDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSELTEARTERdqfsqesgnldDQLQKLLADLHKREKELsLE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 633 STQVSEQKQRELTNSI------RKLEEELLEIK---GLLEEKREQLKKSKEQE-KALEEEIEALRQEAKRKEKM--AKEH 700
Cdd:pfam15921 397 KEQNKRLWDRDTGNSItidhlrRELDDRNMEVQrleALLKAMKSECQGQMERQmAAIQGKNESLEKVSSLTAQLesTKEM 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 701 LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKdSIMILQTQLDSAIQKEKNCFQNMVSK-EAYEE 779
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR-SRVDLKLQELQHLKNEGDHLRNVQTEcEALKL 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 780 LVRKSGNCQDDLTQALEKLTQATSETkslNRSLQQTQERKAQLEDEIaayeermKKLNMELKKLQGFQQQSEQEVHNFDK 859
Cdd:pfam15921 556 QMAEKDKVIEILRQQIENMTQLVGQH---GRTAGAMQVEKAQLEKEI-------NDRRLELQEFKILKDKKDAKIRELEA 625
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1720428051 860 KLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESL 903
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNEL 669
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
452-903 |
2.95e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLkvsdQNLTQ 531
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL----DELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 532 SKEEAhlSASSLEDAHRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELsegQRRLSNAEK 611
Cdd:COG4913 331 QIRGN--GGDRLEQLEREIE-------RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA---AALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 612 EKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEE----KREQLK--------KSKEQ---- 675
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEalglDEAELPfvgelievRPEEErwrg 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 676 --EKAL---------EEE-----IEALRQEAKR--------KEKMAKEHLRKLDEE--------KEN-----LQAELTSR 718
Cdd:COG4913 479 aiERVLggfaltllvPPEhyaaaLRWVNRLHLRgrlvyervRTGLPDPERPRLDPDslagkldfKPHpfrawLEAELGRR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 719 SSHL--DS--SLNKYN--------------------------------SSQKVIQELNAEIARQKDSIMILQTQLDSAIQ 762
Cdd:COG4913 559 FDYVcvDSpeELRRHPraitragqvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 763 KEKNCFQnmvSKEAYEELVRKSGNCQD---------DLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERM 833
Cdd:COG4913 639 ELDALQE---RREALQRLAEYSWDEIDvasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI 715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 834 KKLNMELKKLQGFQQQSEQEVHNFDKK--------LEEMSNQVLQWQRQHQsdlkMLAAKESQLREFQEEMATLRESL 903
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAEDLarlelralLEERFAAALGDAVERE----LRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
502-820 |
3.60e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 502 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA----HLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE 577
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKkaleYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 578 SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE 657
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 658 IKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQ 737
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 738 ELNAEIARQKDSIMILQTQLD---SAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQ 814
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEeeeESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
....*.
gi 1720428051 815 TQERKA 820
Cdd:pfam02463 493 QKLEER 498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
788-1010 |
3.71e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 788 QDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKL------ 861
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelrae 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 862 -----EEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQimNNV 936
Cdd:COG4942 99 leaqkEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER--AEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428051 937 EQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIE--EKKLKAGNPRICVKAFPPNK 1010
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAERTPAAGFAALK 252
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
405-879 |
4.27e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.94 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 405 REETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttke 484
Cdd:pfam01576 203 RQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQ----- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 485 LDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKE-EV 563
Cdd:pfam01576 278 EDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHtQA 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 564 IKDLQSQL--------------HKLQKESSKIEEERKHNRQRLQE-------LSSELSEGQRRLSNAEKEKSLLQKTLDE 622
Cdd:pfam01576 358 LEELTEQLeqakrnkanlekakQALESENAELQAELRTLQQAKQDsehkrkkLEGQLQELQARLSESERQRAELAEKLSK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 623 DEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEK---------------------REQLKKSKEQEKALEE 681
Cdd:pfam01576 438 LQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEEtrqklnlstrlrqledernslQEQLEEEEEAKRNVER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 682 EIEALRQ---EAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIarqKDSIMIL--QTQ 756
Cdd:pfam01576 518 QLSTLQAqlsDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL---DDLLVDLdhQRQ 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 757 LDSAIQKEKNCFQNM------VSKEAYEELVRKSGNCQD------DLTQALEKLTQATSETKSLNRSL------------ 812
Cdd:pfam01576 595 LVSNLEKKQKKFDQMlaeekaISARYAEERDRAEAEAREketralSLARALEEALEAKEELERTNKQLraemedlvsskd 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 813 -----------------QQTQERKAQ---LEDEIAAYEErmKKLNMELkKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQ 872
Cdd:pfam01576 675 dvgknvhelerskraleQQVEEMKTQleeLEDELQATED--AKLRLEV-NMQALKAQFERDLQARDEQGEEKRRQLVKQV 751
|
....*..
gi 1720428051 873 RQHQSDL 879
Cdd:pfam01576 752 RELEAEL 758
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
582-904 |
5.22e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 582 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS---IRKLEEELLEI 658
Cdd:TIGR01612 529 DIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyINKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 659 KGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELtsrSSHLDSSLNK-YNSSQKVIQ 737
Cdd:TIGR01612 609 IKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSEL---SKIYEDDIDAlYNELSSIVK 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 738 ELNAEIARQKDSIMILQTQLDsaiqKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE-TKSLNRSLQQTQ 816
Cdd:TIGR01612 686 ENAIDNTEDKAKLDDLKSKID----KEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEiNKDLNKILEDFK 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 817 ERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVhNFDKKLEEMSNQVLQWQRQHqsdLKMLAAKESQLREFQEEM 896
Cdd:TIGR01612 762 NKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI-NIDNIKDEDAKQNYDKSKEY---IKTISIKEDEIFKIINEM 837
|
....*...
gi 1720428051 897 ATLRESLL 904
Cdd:TIGR01612 838 KFMKDDFL 845
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
275-961 |
5.44e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 275 VIQEHQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFAS-YTAT--------HRHPPTSSEDC 345
Cdd:TIGR00606 239 IVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKvFQGTdeqlndlyHNHQRTVREKE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 346 EDITKILKHLQE-QKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHG--------------LREETSC 410
Cdd:TIGR00606 319 RELVDCQRELEKlNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfergpfserqIKNFHTL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 411 VIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTK---ELDT 487
Cdd:TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDrilELDQ 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 488 SLQEARQSTSKID----CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEV 563
Cdd:TIGR00606 479 ELRKAERELSKAEknslTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 564 IKDLQSQL------HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhSTQVS 637
Cdd:TIGR00606 559 SDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC-GSQDE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 638 EQKQRELTNSIRKLEEELLEIKG---LLEEKREQLK--------------KSKEQEKALEEEIEALRQEAKRKEKMAKEH 700
Cdd:TIGR00606 638 ESDLERLKEEIEKSSKQRAMLAGataVYSQFITQLTdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESE 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 701 LRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEEL 780
Cdd:TIGR00606 718 LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERF 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 781 vrksgncQDDLTQALEKLTQATSETKSLNRSLQQTQERKaqledEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKK 860
Cdd:TIGR00606 798 -------QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQ-----EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 861 LEEMSNQVLQwqrqhqsdLKMLAAKESQLREFQEEMATLRESL---LADEKEPYSPPAKLTPKEtcrhHRENDQIMNNVE 937
Cdd:TIGR00606 866 TNELKSEKLQ--------IGTNLQRRQQFEEQLVELSTEVQSLireIKDAKEQDSPLETFLEKD----QQEKEELISSKE 933
|
730 740
....*....|....*....|....
gi 1720428051 938 QwakEQKIANEKLgNKLREQVKYI 961
Cdd:TIGR00606 934 T---SNKKAQDKV-NDIKEKVKNI 953
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
448-699 |
7.57e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.44 E-value: 7.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLK---- 523
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELN---EEYNELQAELEALQAEID--KLQAEIAEAEAEIEERREELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 524 -VSDQNLTQSKEEAHLSASSLEDahrkiencllqdkqkeevikdLQSQLHKLQKESSkieeerkHNRQRLQELSSELSEg 602
Cdd:COG3883 94 aLYRSGGSVSYLDVLLGSESFSD---------------------FLDRLSALSKIAD-------ADADLLEELKADKAE- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 603 qrrlsnAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEE 682
Cdd:COG3883 145 ------LEAKKAELEAKLAELEALKAEL-------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
250
....*....|....*..
gi 1720428051 683 IEALRQEAKRKEKMAKE 699
Cdd:COG3883 212 AAAAAAAAAAAAAAAAA 228
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
417-996 |
7.61e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 7.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 417 KETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQST 496
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 497 SKIDCEALRAEIQKLKDS---LEEAREQLKVSDQNLTQSKEEAHL--SASSLEDAHRKIENCLLQDKQKEEVIKDLQsQL 571
Cdd:PTZ00121 1157 ARKAEDARKAEEARKAEDakkAEAARKAEEVRKAEELRKAEDARKaeAARKAEEERKAEEARKAEDAKKAEAVKKAE-EA 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 572 HKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLS-NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRK 650
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 651 LEEELLEIKGLLEEKREQLKKSKEQEKALEE----EIEALRQEAKRKEKMAKEHLRKLDEEKENLQA--ELTSRSSHLDS 724
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakKKAEEKKKADE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 725 SLNKYNSSQKVIQELN--AEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYE--ELVRKSGNCQDDLTQA--LEKL 798
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKkaEEAKKAEEAKKKAEEAkkADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 799 TQATSETKSLNRSLQQTQERKAQLEDEIAAYEErmKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMsnqvlqwqRQHQSD 878
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKADEAKKAEEAKKADEA--------KKAEEK 1545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 879 LKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQV 958
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
570 580 590
....*....|....*....|....*....|....*...
gi 1720428051 959 KYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKA 996
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
452-693 |
8.05e-06 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 49.69 E-value: 8.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDT-SLQEARQstskidcEALRAEIQKLKDSlEEAREQLKVSDQNLT 530
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEAaALQPGEE-------EELEEERRRLSNA-EKLREALQEALEALS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 531 qskeEAHLSASSLedahrkiencllqdkqkeevIKDLQSQLHKLQKESSKIEEerkhNRQRLQELSSELSEGQRRLSNae 610
Cdd:COG0497 237 ----GGEGGALDL--------------------LGQALRALERLAEYDPSLAE----LAERLESALIELEEAASELRR-- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 611 kekslLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKL---EEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR 687
Cdd:COG0497 287 -----YLDSLEFDPERLEEV-------EERLALLRRLARKYgvtVEELLAYAEELRAELAELENSDERLEELEAELAEAE 354
|
....*.
gi 1720428051 688 QEAKRK 693
Cdd:COG0497 355 AELLEA 360
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
350-909 |
1.14e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 350 KILKHLQEQKDSQCLHVEeYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscVIEKKDKETVFLQYRLQDL 429
Cdd:pfam12128 242 EFTKLQQEFNTLESAELR-LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ---WKEKRDELNGELSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 430 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLqcTTKELD-TSLQEARQSTSKIDCEALRAEI 508
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKAL--TGKHQDvTAKYNRRRSKIKEQNNRDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 509 QKLKDSLEEAREQLKVS----------------DQNLTQSKEEAHLSASSLEDAHRKI------ENCLLQDKQKEEVIKD 566
Cdd:pfam12128 396 KDKLAKIREARDRQLAVaeddlqaleselreqlEAGKLEFNEEEYRLKSRLGELKLRLnqatatPELLLQLENFDERIER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 567 LQSQLHKLQKESSKIEEER------------KHNR--QRLQELSSELSEGQRRLS------------------------- 607
Cdd:pfam12128 476 AREEQEAANAEVERLQSELrqarkrrdqaseALRQasRRLEERQSALDELELQLFpqagtllhflrkeapdweqsigkvi 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 608 -----------------NAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELT-------NSIRKLEEELLEIKGLLE 663
Cdd:pfam12128 556 spellhrtdldpevwdgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEealqsarEKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 664 EK-------REQLKKSKEQEKALEEEIEALR----QEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSH-----LDSSLN 727
Cdd:pfam12128 636 KAsreetfaRTALKNARLDLRRLFDEKQSEKdkknKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEqkeqkREARTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 728 KYNSSQKVIQELNAEIARQKDSIMILQTQLD---SAIQKEKNcfQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSE 804
Cdd:pfam12128 716 KQAYWQVVEGALDAQLALLKAAIAARRSGAKaelKALETWYK--RDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQE 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 805 TKSLNRSLQQTQERKAQledeiaAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEmsnqvlqwQRQHQSDLKMLAA 884
Cdd:pfam12128 794 VLRYFDWYQETWLQRRP------RLATQLSNIERAISELQQQLARLIADTKLRRAKLEM--------ERKASEKQQVRLS 859
|
650 660
....*....|....*....|....*.
gi 1720428051 885 KE-SQLREFQEEMATLRESLLADEKE 909
Cdd:pfam12128 860 ENlRGLRCEMSKLATLKEDANSEQAQ 885
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
466-995 |
1.19e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 466 NSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLED 545
Cdd:TIGR00618 161 KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 546 AH---RKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELssELSEGQRRLSNAEKEKSLLQKTLDE 622
Cdd:TIGR00618 241 SHaylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 623 DEKKIDELFHSTQvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ---LKKSKEQEKALEEEIEALRQE---AKRKEKM 696
Cdd:TIGR00618 319 KMRSRAKLLMKRA-AHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVatsIREISCQQHTLTQHIHTLQQQkttLTQKLQS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 697 AKEHLRKLDEEKENLQAELTSRSS---HLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS 773
Cdd:TIGR00618 398 LCKELDILQREQATIDTRTSAFRDlqgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 774 KEAYEELVRKSGncqddltQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQgfqqqseQE 853
Cdd:TIGR00618 478 KEQIHLQETRKK-------AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE-------TS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 854 VHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLR--ESLLADEKEPYSPPAKLTPKETCRHHRENDQ 931
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQniTVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428051 932 IMNNVEQWAKEQKIAnEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 995
Cdd:TIGR00618 624 EQDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ 686
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-550 |
1.39e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 199 EKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGLIGQDPENKGDhpkvriytspcvIQE 278
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER------------LEE 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 279 HQETLKRLSEVWQKVSEQddlIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDC----EDITKILKH 354
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATerrlEDLEEQIEE 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 355 LQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYT 434
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE----LRELESKRSELRRELEELREKLA 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 435 ESQklslkkdkllqdkdERLHELEKNLMQVQNSLREK-EAELEKLQCTTKELDTSLQEARQSTSKidceaLRAEIQKLK- 512
Cdd:TIGR02168 926 QLE--------------LRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKR-----LENKIKELGp 986
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1720428051 513 ---DSLEEArEQLKVSDQNLTQSKEEAHLSASSLEDAHRKI 550
Cdd:TIGR02168 987 vnlAAIEEY-EELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-746 |
1.40e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 199 EKLHLAQEQLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGLIGQDPENKgdhpkvriytspcviQE 278
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE---------------EE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 279 HQETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPptsSEDCEDITKILKHLQEQ 358
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL---EEAEEALLERLERLEEE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 359 KDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETscvIEKKDKETVFLQYRLQDLQQQYTESQK 438
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA---ALLEAALAELLEELAEAAARLLLLLEA 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 439 LSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLqcttkeLDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEA 518
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA------LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 519 REQLKVSDQNLTQSKEEAHLSASSLEDAH---------------------------RKIENCLLQDKQKEEVIKDLQSQL 571
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDlvasdlreadaryyvlgdtllgrtlvaARLEAALRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 572 HKLQKESSKIEEERKHN----RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 647
Cdd:COG1196 654 EGGSAGGSLTGGSRRELlaalLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 648 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEK---MAKEHLRKLDEEKENLQAELTSrsshLDS 724
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnlLAIEEYEELEERYDFLSEQRED----LEE 809
|
570 580
....*....|....*....|..
gi 1720428051 725 SLNKYnssQKVIQELNAEIARQ 746
Cdd:COG1196 810 ARETL---EEAIEEIDRETRER 828
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
558-909 |
1.54e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVS 637
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 638 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKeHLRKLDEEKENLQAELTS 717
Cdd:pfam07888 128 EARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELR-SLSKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 718 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCfqnmvsKEAYEELVRKSGNCQDDLTQALEK 797
Cdd:pfam07888 207 QVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGL------GEELSSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 798 LTQATSETKSLNRSLQQTQERKAQ----LEDEIAAYEERMKKLNMELKKLQGFQQQseqevhnfdkklEEMSNQVLQWQR 873
Cdd:pfam07888 281 AAQLTLQLADASLALREGRARWAQeretLQQSAEADKDRIEKLSAELQRLEERLQE------------ERMEREKLEVEL 348
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720428051 874 QHQSDLKMLAAKESQlREFQEEMATLResLLADEKE 909
Cdd:pfam07888 349 GREKDCNRVQLSESR-RELQELKASLR--VAQKEKE 381
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
453-629 |
1.67e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 453 RLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQS 532
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTEL-----EDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 533 KeeahlSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEgqrRLSNAEKE 612
Cdd:COG1579 86 R-----NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAE 157
|
170
....*....|....*..
gi 1720428051 613 KSLLQKTLDEDEKKIDE 629
Cdd:COG1579 158 LEELEAEREELAAKIPP 174
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
573-759 |
1.81e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 573 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQKQRELTNSIRKLE 652
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 653 --EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYN 730
Cdd:COG4717 123 klLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180
....*....|....*....|....*....
gi 1720428051 731 SSQKVIQELNAEIARQKDSIMILQTQLDS 759
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQ 231
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
426-678 |
1.97e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 426 LQDLQQQYTESQKLSLKkdkllQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEarqstskidcEALR 505
Cdd:COG3206 154 ANALAEAYLEQNLELRR-----EEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA----------KLLL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 506 AEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhrkIENCLLQDKQKEevIKDLQSQLHKLQKESSKIEEER 585
Cdd:COG3206 219 QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL---LQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDV 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 586 KHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE--EELLEikgLL 662
Cdd:COG3206 294 IALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvaRELYE---SL 370
|
250
....*....|....*.
gi 1720428051 663 EEKREQLKKSKEQEKA 678
Cdd:COG3206 371 LQRLEEARLAEALTVG 386
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
551-857 |
2.11e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 551 ENCLLQDKQKEEVIKDLQSQLH-KLQKESSKIE-----EERKHNRQRLQELSSELSEGQRRLSNAEKEKSL--LQKTLDE 622
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTvEPVKGSNVIEisytsPDPELAAAVANALAEAYLEQNLELRREEARKALefLEEQLPE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 623 DEKKIDElfhstqvSEQKQREL--TNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEH 700
Cdd:COG3206 187 LRKELEE-------AEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 701 LRklDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNMVSKeayeel 780
Cdd:COG3206 260 LQ--SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-------LRAQLQQEAQRILASLEAELEA------ 324
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 781 vrksgncqddLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLnmeLKKLQGFQQQSEQEVHNF 857
Cdd:COG3206 325 ----------LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESL---LQRLEEARLAEALTVGNV 388
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
448-992 |
2.79e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLmqvQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQKLK---DSLEEAREQLKV 524
Cdd:TIGR00606 297 QGTDEQLNDLYHNH---QRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRhqeHIRARDSLIQSL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 525 SDQNLTQSKEEAHLSASSLEDAHR-KIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQ 603
Cdd:TIGR00606 374 ATRLELDGFERGPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 604 RRLSNAEKEKSLLQKTLDEDEKKIDELFHStqVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEI 683
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKA--ERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 684 EALRQ-EAKRKEKMAKEhlRKLDEEKENLQAELTSR----------SSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMI 752
Cdd:TIGR00606 532 TTRTQmEMLTKDKMDKD--EQIRKIKSRHSDELTSLlgyfpnkkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNH 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 753 LQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQ----------ERKAQL 822
Cdd:TIGR00606 610 INNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTdenqsccpvcQRVFQT 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 823 EDEIaayEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRES 902
Cdd:TIGR00606 690 EAEL---QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 903 LLADEKEPYSPPAKLTPKETCRHHRENDQ--IMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQ 980
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMErfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIE 846
|
570
....*....|..
gi 1720428051 981 ENKKLKNEIEEK 992
Cdd:TIGR00606 847 LNRKLIQDQQEQ 858
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
508-719 |
3.05e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.09 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 508 IQKLKDSLEEAREQLKVSDQNL-------TQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKES 578
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIarkqnkyDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIksKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 579 SKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvseqkqRELTNSIRKLEEELLEI 658
Cdd:PHA02562 274 FQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL-----------EEIMDEFNEQSKKLLEL 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428051 659 KGLLEEKREQLKKSKEQEKALEEEIEALRQE-AKRKEKMAK--EHLRKLDEEKENLQAELTSRS 719
Cdd:PHA02562 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEfVDNAEELAKlqDELDKIVKTKSELVKEKYHRG 406
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
370-709 |
3.35e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 370 QNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQD 449
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 450 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQK------LKDSLEEAREQLK 523
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeeklkaQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 524 VSDQNLTQS-KEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 602
Cdd:pfam02463 812 EEAELLEEEqLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 603 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEK----- 677
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLlakee 971
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1720428051 678 -------ALEEEIEALRQEAKRKEKMA------KEHLRKLDEEKE 709
Cdd:pfam02463 972 lgkvnlmAIEEFEEKEERYNKDELEKErleeekKKLIRAIIEETC 1016
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
597-764 |
3.63e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 597 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKK----- 671
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraral 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 672 ---------------SK-----------------------EQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQA 713
Cdd:COG3883 96 yrsggsvsyldvllgSEsfsdfldrlsalskiadadadllEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 714 ELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKE 764
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
469-922 |
4.07e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.51 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 469 REKEAELEKLQCTTKELDTSLQEARQSTSKIDCE--ALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDA 546
Cdd:pfam10174 271 EEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESEllALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 547 HRKIEncllqdkQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNaekekslLQKTLDEDEKK 626
Cdd:pfam10174 351 RLRLE-------EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIEN-------LQEQLRDKDKQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 627 IDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQlKKSKEQEKAleEEIEALRQEAKR-KEKMakEHLRKLD 705
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQ-REREDRERL--EELESLKKENKDlKEKV--SALQPEL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 706 EEKENLQAELTSRSSHLDSSLNKYNSSQKviqELNAEIARQKDSIMILQTQLDSAIQKEkncfqnmVSKEAYEELVrksg 785
Cdd:pfam10174 492 TEKESSLIDLKEHASSLASSGLKKDSKLK---SLEIAVEQKKEECSKLENQLKKAHNAE-------EAVRTNPEIN---- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 786 ncqddltqalekltqatsetkslnrslqqtqERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMS 865
Cdd:pfam10174 558 -------------------------------DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELE 606
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 866 NQVLqwqRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAKLTPKET 922
Cdd:pfam10174 607 SLTL---RQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEEL 660
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
422-740 |
4.42e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 422 LQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDC 501
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 502 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKE---- 577
Cdd:pfam02463 268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKElkel 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 578 ----------SSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNS 647
Cdd:pfam02463 348 eikreaeeeeEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 648 IRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLN 727
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
330
....*....|...
gi 1720428051 728 KYNSSQKVIQELN 740
Cdd:pfam02463 508 GLKVLLALIKDGV 520
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
599-717 |
5.53e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 599 LSEGQRRLSNAEKEKSLLQKtlDEDEKKIDELfhstqvsEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 678
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAK--EEIHKLRNEF-------EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|....*....
gi 1720428051 679 LEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqAELTS 717
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQELERI-SGLTA 152
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
286-706 |
8.12e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 286 LSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRhppTSSEDCEDITKILKHLQEQKDSQCLH 365
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS---EKQRELEEKQNEIEKLKKENQSYKQE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 366 VEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDK 445
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 446 LLQDKDERLHELEK-------NLMQVQNSLREKEAELEKLQCTTKELDTSLQE--ARQSTSKIDCEALRAEIQKLKDSLE 516
Cdd:TIGR04523 462 TRESLETQLKVLSRsinkikqNLEQKQKELKSKEKELKKLNEEKKELEEKVKDltKKISSLKEKIEKLESEKKEKESKIS 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 517 EAREQLKVSDQNLTQSK------------EEAHLSASSLEDAHRKIENCLlqdKQKEEVIKDLQSQLHKLQKESSKIEEE 584
Cdd:TIGR04523 542 DLEDELNKDDFELKKENlekeideknkeiEELKQTQKSLKKKQEEKQELI---DQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 585 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELL-----EIK 659
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSlhykkYIT 698
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1720428051 660 GLLEEKreQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDE 706
Cdd:TIGR04523 699 RMIRIK--DLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFDD 743
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
502-854 |
8.89e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 8.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 502 EALRAEIQKLKDSLEEAREqlkvsDQNLTQSKEEA-------HLS-------ASSLEDAHRKI----------ENCLLQD 557
Cdd:PRK04863 789 EQLRAEREELAERYATLSF-----DVQKLQRLHQAfsrfigsHLAvafeadpEAELRQLNRRRveleraladhESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLHKLQKESSKIEEErkHNRQRLQELSSELSEGQ----------RRLSNAEKEKSLLQktldEDEKKI 627
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNLLADE--TLADRVEEIREQLDEAEeakrfvqqhgNALAQLEPIVSVLQ----SDPEQF 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 628 DELFHSTQVSEQKQRELTNSIRKLEEelleikglLEEKREQLKKSKEQEKALEEE--IEALRQEAKRKEKMakehLRKLD 705
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAKQQAFALTE--------VVQRRAHFSYEDAAEMLAKNSdlNEKLRQRLEQAEQE----RTRAR 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 706 EEKENLQAELTsrsshldsslnKYNSsqkviqelnaeiarqkdsimiLQTQLDSAIQkekncfqnmvskeAYEELVrksg 785
Cdd:PRK04863 1006 EQLRQAQAQLA-----------QYNQ---------------------VLASLKSSYD-------------AKRQML---- 1036
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 786 ncqDDLTQALEKLT---------QATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ-GFQQQSEQEV 854
Cdd:PRK04863 1037 ---QELKQELQDLGvpadsgaeeRARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLErDYHEMREQVV 1112
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
416-727 |
9.66e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.61 E-value: 9.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 416 DKETVFLQY---------RLQDLQQQYTESQKLSLKKDKllqdKDERLHELEKnlmQVQNSLRE----KEAELEKLQCTT 482
Cdd:COG5022 865 KKETIYLQSaqrvelaerQLQELKIDVKSISSLKLVNLE----LESEIIELKK---SLSSDLIEnlefKTELIARLKKLL 937
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 483 KELDTSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSK---EEAHLSASSLedAHRKIENCLLQDKQ 559
Cdd:COG5022 938 NNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNkanSELKNFKKEL--AELSKQYGALQEST 1015
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 560 KEevIKDLQSQLHKLQKESSKIEEER--KHNRQRLQELSSELSEGQRRLS------NAEKEKSLLQKTLDEDEKKIDELF 631
Cdd:COG5022 1016 KQ--LKELPVEVAELQSASKIISSESteLSILKPLQKLKGLLLLENNQLQarykalKLRRENSLLDDKQLYQLESTENLL 1093
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 632 HSTQVSEQK--QRELTNSIRKLE---------EELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEH 700
Cdd:COG5022 1094 KTINVKDLEvtNRNLVKPANVLQfivaqmiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPP 1173
|
330 340
....*....|....*....|....*..
gi 1720428051 701 LRKLDEEKENLQAELTSRSSHLDSSLN 727
Cdd:COG5022 1174 FAALSEKRLYQSALYDEKSKLSSSEVN 1200
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
617-743 |
9.84e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.36 E-value: 9.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 617 QKTLDEDEKKIDELFHStqvSEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQekaLEEEIEALRQEAKRK--- 693
Cdd:PRK00409 508 KKLIGEDKEKLNELIAS---LEELERELEQKAEEAEALLKE----AEKLKEELEEKKEK---LQEEEDKLLEEAEKEaqq 577
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 694 -----EKMAKEHLRKLDEEKENLQA-----ELTSRSSHLDSSLNKYNSSQKVIQELNAEI 743
Cdd:PRK00409 578 aikeaKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
543-995 |
1.09e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 543 LEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDE 622
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 623 DEKKIDElfhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAK--RKEKMAKEH 700
Cdd:TIGR04523 129 LEKQKKE-------NKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDkiKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 701 LRKLDEEKENLQAELTSRSSHLDsslNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEA-YEE 779
Cdd:TIGR04523 202 LLSNLKKKIQKNKSLESQISELK---KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKeLEQ 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 780 LVRKSGNCQDDLTQALEKLTQATSE-----TKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEV 854
Cdd:TIGR04523 279 NNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 855 HNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLrefqeematlreslladekepysppakltpketcrhhrendqimN 934
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI--------------------------------------------N 394
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 935 NVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLK 995
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
463-913 |
1.09e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 463 QVQNSLrEKEAELEKLQCTTKELDTSLQEARQSTSKIDceALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEA------ 536
Cdd:PRK11281 40 DVQAQL-DALNKQKLLEAEDKLVQQDLEQTLALLDKID--RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNdeetre 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 537 HLSASSLEDAHRKIENCL--LQDKQKEevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL---SEGQRRLSNAEK 611
Cdd:PRK11281 117 TLSTLSLRQLESRLAQTLdqLQNAQND--LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLkggKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 612 EksLLQKTLDEDEKKID----ELFHSTQVSE--QKQRELTNS-IRKLEEELLEIKGLLEEKReqLKKSKEQEKaleeeiE 684
Cdd:PRK11281 195 V--LLQAEQALLNAQNDlqrkSLEGNTQLQDllQKQRDYLTArIQRLEHQLQLLQEAINSKR--LTLSEKTVQ------E 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 685 ALRQEAKrkekmakehlrkldeekenlqaeltsrsshldsslNKYNSSQKVIQELNAeiarqkdsimilQTQLDsaiqke 764
Cdd:PRK11281 265 AQSQDEA-----------------------------------ARIQANPLVAQELEI------------NLQLS------ 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 765 kncfqnmvskeayEELVRKsgncqddlTQALEKLTQATSETKSLNRSLQQTQErkaQLEDEIAAyeermkklnmelkkLQ 844
Cdd:PRK11281 292 -------------QRLLKA--------TEKLNTLTQQNLRVKNWLDRLTQSER---NIKEQISV--------------LK 333
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 845 G--------FQQQseQEVHNfDKKLEEMSNQVLQWqRQHQSDLkmlaakeSQLREFQEEMATLRESLLADEKEPYSP 913
Cdd:PRK11281 334 GslllsrilYQQQ--QALPS-ADLIEGLADRIADL-RLEQFEI-------NQQRDALFQPDAYIDKLEAGHKSEVTD 399
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
280-891 |
1.65e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 280 QETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYtathrhpptsSEDCEDITKILKHLQEQK 359
Cdd:pfam01576 415 QELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL----------ESQLQDTQELLQEETRQK 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 360 DSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLR---EETSCVIEKKDKETVFLQYRLQDLQQQYTES 436
Cdd:pfam01576 485 LNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKkklEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 437 QKLSLKKDKLLqdkdERLHELEKNLMQVQNSLREKEAELEKLQcttKELDTSLQEARQSTSKIDCEALRAE--------- 507
Cdd:pfam01576 565 AAAYDKLEKTK----NRLQQELDDLLVDLDHQRQLVSNLEKKQ---KKFDQMLAEEKAISARYAEERDRAEaeareketr 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 508 ----------IQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIencllqdkqkEEVIKDLQSQLHKLQKE 577
Cdd:pfam01576 638 alslaraleeALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRAL----------EQQVEEMKTQLEELEDE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 578 SSKIEEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvsEQKQRELTNSIRK-LEEEL 655
Cdd:pfam01576 708 LQATEDAKLRLEVNMQALKAQFErDLQARDEQGEEKRRQLVKQVRELEAELED--------ERKQRAQAVAAKKkLELDL 779
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 656 LEIKGLL-------EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeekENLQAELTSRSSHLDSSLNK 728
Cdd:pfam01576 780 KELEAQIdaankgrEEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKL----KNLEAELLQLQEDLAASERA 855
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 729 YNSSQKVIQELNAEIARQKDSimilqtqlDSAIQKEKNCFQNMVSkEAYEELVRKSGNcqddlTQAL-EKLTQATSETKS 807
Cdd:pfam01576 856 RRQAQQERDELADEIASGASG--------KSALQDEKRRLEARIA-QLEEELEEEQSN-----TELLnDRLRKSTLQVEQ 921
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 808 LNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG-FQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKE 886
Cdd:pfam01576 922 LTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGtVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTE 1001
|
....*
gi 1720428051 887 SQLRE 891
Cdd:pfam01576 1002 KKLKE 1006
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
452-761 |
1.67e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQStskIDCEALRA-EIQKLKDSLEEAREQLKVSDQNLT 530
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LDVQQTRAiQYQQAVQALEKARALCGLPDLTPE 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 531 QSKEEAHLSASSLEDAHRKiencLLQDKQKEEVIKDLQSQLHK----LQKESSKIEEERKHNR---------------QR 591
Cdd:COG3096 438 NAEDYLAAFRAKEQQATEE----VLELEQKLSVADAARRQFEKayelVCKIAGEVERSQAWQTarellrryrsqqalaQR 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 592 LQELSSELSEGQRRLSNAEKEKSLLQktldedekkidelfhstQVSEQKQRELTNSIrKLEEELLEIKGLLEEKREQLKK 671
Cdd:COG3096 514 LQQLRAQLAELEQRLRQQQNAERLLE-----------------EFCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAE 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 672 SKEQEKALEEEIEALRQEAKRKEKMAKEhLRKLDEEKENLQAELtsrSSHLDSSLNKYNSSQKVIQELNaEIARQKDSIM 751
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKELAARAPA-WLAAQDALERLREQS---GEALADSQEVTAAMQQLLERER-EATVERDELA 650
|
330
....*....|
gi 1720428051 752 ILQTQLDSAI 761
Cdd:COG3096 651 ARKQALESQI 660
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
372-675 |
1.72e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 372 LVKDLRMELEAVSEQKKKIMKDMMKLELDlhglREETSCVIEKKDKetvflQYRLQDLQQQYTESQKLSLKKDKLLQDKD 451
Cdd:TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDLD----RTVQQVNQEKQEK-----QHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNL 529
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 530 TQSKEEAHLSASSLEDAHRKI-ENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSN 608
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 609 AEKEKSLlqKTLDEDEKKIDELFHSTQVSEQKQ--RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQ 675
Cdd:TIGR00606 1024 RKRENEL--KEVEEELKQHLKEMGQMQVLQMKQehQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
429-853 |
1.86e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 45.44 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 429 LQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKlQCTTKELDTSLQEARQSTSKidceaLRAEI 508
Cdd:pfam13166 87 LGEESIEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEADFLD-ECWKKIKRKKNSALSEALNG-----FKYEA 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 509 QKLKDSLEEAREQLKVSDQNLTQSKEEAhLSASSLEDAHRKIENCLLQDKQKEEVIKD--LQSqlhKLQKESSKIEEERK 586
Cdd:pfam13166 161 NFKSRLLREIEKDNFNAGVLLSDEDRKA-ALATVFSDNKPEIAPLTFNVIDFDALEKAeiLIQ---KVIGKSSAIEELIK 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 587 HNrqrlqELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKK-IDELFhstqvseqkQRELTNSIRKLEEELLEIKGLLEEK 665
Cdd:pfam13166 237 NP-----DLADWVEQGLELHKAHLDTCPFCGQPLPAERKAaLEAHF---------DDEFTEFQNRLQKLIEKVESAISSL 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 666 REQLKKSKEQEK---ALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLqaeltSRSSHLDSSLNKYNSSQKVIQELNAE 742
Cdd:pfam13166 303 LAQLPAVSDLASllsAFELDVEDIESEAEVLNSQLDGLRRALEAKRKDP-----FKSIELDSVDAKIESINDLVASINEL 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 743 IARQKDSImilqTQLDSAIQKEKNCFQNMVSKEAYEELVrksgNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQL 822
Cdd:pfam13166 378 IAKHNEIT----DNFEEEKNKAKKKLRLHLVEEFKSEID----EYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKEL 449
|
410 420 430
....*....|....*....|....*....|...
gi 1720428051 823 EDEIAAYEERMKKLNMELKK--LQGFQQQSEQE 853
Cdd:pfam13166 450 EAQLRDHKPGADEINKLLKAfgFGELELSFNEE 482
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
573-901 |
2.54e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 573 KLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSnaekeksllqkTLDEDEKKIDELFHSTQVSEQKQRELT---NSIR 649
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAES-----------DLEQDYQAASDHLNLVQTALRQQEKIEryqADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 650 KLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALR--------------------QEAKRKEKMAKE-------HLR 702
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKsqladyqqaldvqqtraiqyQQAVQALERAKQlcglpdlTAD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 703 KLDEEKENLQAELTSRSSHLDSSLNKYNSSQkviqelnaEIARQKDSIMILQTQLDSAIQKE--KNCFQNMVskEAYEEL 780
Cdd:PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQ--------AAHSQFEQAYQLVRKIAGEVSRSeaWDVARELL--RRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 781 VRKSGNCQdDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLqgfqqqsEQEVHNFDKK 860
Cdd:PRK04863 509 RHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL-------SESVSEARER 580
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1720428051 861 LEEMSNQvlqwQRQHQSDLKMLAAKESQLREFQEEMATLRE 901
Cdd:PRK04863 581 RMALRQQ----LEQLQARIQRLAARAPAWLAAQDALARLRE 617
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
582-920 |
2.61e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 44.86 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 582 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTldedekkiDELFHSTQVSEQKQRELTNSIRKLEEELLEikgl 661
Cdd:pfam02029 10 ERRRRAREERRRQKEEEEPSGQVTESVEPNEHNSYEED--------SELKPSGQGGLDEEEAFLDRTAKREERRQK---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 662 leEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHL---RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 738
Cdd:pfam02029 78 --RLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWekeEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 739 LNAEIARQKDSIMI-LQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQE 817
Cdd:pfam02029 156 GEEEEDKSEEAEEVpTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 818 RK----AQLEDEIAAYEERMK---KLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV-LQWQRQHQSDLKMLAAKESQL 889
Cdd:pfam02029 236 REeeaeVFLEAEQKLEELRRRrqeKESEEFEKLRQKQQEAELELEELKKKREERRKLLeEEEQRRKQEEAERKLREEEEK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1720428051 890 REFQEEMATLR-----------ESLLADEKEPYSPpakLTPK 920
Cdd:pfam02029 316 RRMKEEIERRRaeaaekrqklpEDSSSEGKKPFKC---FSPK 354
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
412-612 |
2.95e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 412 IEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQE 491
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 492 ARQSTSKID--------------CEALRAEI---QKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENcl 554
Cdd:COG3883 98 SGGSVSYLDvllgsesfsdfldrLSALSKIAdadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA-- 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 555 lQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKE 612
Cdd:COG3883 176 -QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
502-991 |
3.25e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 502 EALRAEIQKLKDSLEEAREQLKVSDQNLTQskeeahlsassledahrkiencllqdkqkeevikdLQSQLHKLQKESSKI 581
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQ-----------------------------------ANGELEKASREETFA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 582 EEERKHNRQRLQELSSELSEGQRRLSNA-EKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQREltnsirkleeelleikG 660
Cdd:pfam12128 645 RTALKNARLDLRRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE----------------Q 708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 661 LLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENlqaeltsrsshldsSLNKYNSSQKVIQELN 740
Cdd:pfam12128 709 KREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKR--------------DLASLGVDPDVIAKLK 774
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 741 AEIArqkdsimilqtqldSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDD-LTQALEKLTQATSETK-SLNRSLQQTQER 818
Cdd:pfam12128 775 REIR--------------TLERKIERIAVRRQEVLRYFDWYQETWLQRRPrLATQLSNIERAISELQqQLARLIADTKLR 840
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 819 KAQLEDEIAAYEERMKKLNMELKKLQGFQQ-----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkMLAAKESQLREFQ 893
Cdd:pfam12128 841 RAKLEMERKASEKQQVRLSENLRGLRCEMSklatlKEDANSEQAQGSIGERLAQLEDLKLKRDY---LSESVKKYVEHFK 917
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 894 EEMATLRESLLADEKEPYSPPAKLTPKETCRHHRENdQIMNNVEQWAK---EQKIaneklgNKLREQVKYIAK-LTGEKD 969
Cdd:pfam12128 918 NVIADHSGSGLAETWESLREEDHYQNDKGIRLLDYR-KLVPYLEQWFDvrvPQSI------MVLREQVSILGVdLTEFYD 990
|
490 500
....*....|....*....|..
gi 1720428051 970 HLHNVMVHLQQENKKLKNEIEE 991
Cdd:pfam12128 991 VLADFDRRIASFSRELQREVGE 1012
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
597-714 |
3.58e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 597 SELSEGQRRLSNAEKEKSLLQKTLDEDEKKidelfhstqvseqkqreltnSIRKLEEELLEikglLEEKREQLKKSKEQE 676
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFE--------------------RLAELRDELAE----LEEELEALKARWEAE 466
|
90 100 110
....*....|....*....|....*....|....*...
gi 1720428051 677 KALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 714
Cdd:COG0542 467 KELIEEIQELKEELEQRYGKIPELEKELAELEEELAEL 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
774-909 |
3.59e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 774 KEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQ----- 848
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllply 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428051 849 ----QSEQEVHNFDKKLEEMSNQVLQWQRQHQSdlkmLAAKESQLREFQEEMATLRESLLADEKE 909
Cdd:COG4717 132 qeleALEAELAELPERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQLSLATEE 192
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
281-707 |
3.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 281 ETLKRLSEVWQKVSEQDDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSSEDcEDITKILKHLQEQKD 360
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 361 SQCLHVEEYQNLVKDLRMELEAVSEqkkkimkdmmkLELDLHGLREETSCVIEKKDKEtvfLQYRLQDLQQQYTESQKLS 440
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAE-----------LQEELEELLEQLSLATEEELQD---LAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 441 LKKDKLLQDKDERLHELEKNLM--QVQNSLREKE---------AELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEIQ 509
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEaaALEERLKEARlllliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 510 KLKDSLEEARE-QLKVSDQNLTQSKEEAHLSASSLEDAHRKIEncLLQDKQKEEVIKDLQSQLHKLQKESsKIEEERKHN 588
Cdd:COG4717 296 EKASLGKEAEElQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEELEEEL-QLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 589 RQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFhstqvSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 668
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL-----GELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1720428051 669 LKKSKEQEKALEEEIEALR-----QEAKRKEKMAKEHLRKLDEE 707
Cdd:COG4717 448 LEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEE 491
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
510-701 |
4.02e-04 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 44.09 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 510 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSL-EDAHRKiencllQDKQKEEVIKDLQSQLHKLQKEsskIEEERKHN 588
Cdd:PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIkKTAKRE------SKALKKELLLEAKEEARKYREE---IEQEFKSE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 589 RQRLQELSSELSEGQRRLsnaekeksllqktldedEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQ 668
Cdd:PRK00106 96 RQELKQIESRLTERATSL-----------------DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 669 LKKS-------------KEQEKALEEEI-----EALRQEAKRKEKMAKEHL 701
Cdd:PRK00106 159 LERVaalsqaeareiilAETENKLTHEIatrirEAEREVKDRSDKMAKDLL 209
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
504-672 |
4.19e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 504 LRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEahlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKL--QKESSKI 581
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTE-------LEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 582 EEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvseqKQRELTNSIRKLEEELLEikgl 661
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEE----------KKAELDEELAELEAELEE---- 160
|
170
....*....|.
gi 1720428051 662 LEEKREQLKKS 672
Cdd:COG1579 161 LEAEREELAAK 171
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
516-858 |
4.41e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 4.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 516 EEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQD-KQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRlQE 594
Cdd:COG5185 228 IINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYTKS-ID 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 595 LSSELSEGQRRLSNAEKEKSLLQKTLdEDEKKIDELFHSTqvsEQKQRELTNSIRKLEEELLEIKGL--LEEKREQLKKS 672
Cdd:COG5185 307 IKKATESLEEQLAAAEAEQELEESKR-ETETGIQNLTAEI---EQGQESLTENLEAIKEEIENIVGEveLSKSSEELDSF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 673 KEQEKALEEEIEALRQEAKRKEKMAKEHLRK----LDEEKENLQAELtsrsshlDSSLNKYNSSQKVIQELNAEIARQKD 748
Cdd:COG5185 383 KDTIESTKESLDEIPQNQRGYAQEILATLEDtlkaADRQIEELQRQI-------EQATSSNEEVSKLLNELISELNKVMR 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 749 SIMilqtqldsaiqkekncfqnmvskeayeelvrksGNCQDDLTQALEKLTQATSETK-SLNRSLQQTQERKAQLEDEIA 827
Cdd:COG5185 456 EAD---------------------------------EESQSRLEEAYDEINRSVRSKKeDLNEELTQIESRVSTLKATLE 502
|
330 340 350
....*....|....*....|....*....|.
gi 1720428051 828 AYEERMKklnmelKKLQGFQQQSEQEVHNFD 858
Cdd:COG5185 503 KLRAKLE------RQLEGVRSKLDQVAESLK 527
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
633-909 |
4.45e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.36 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 633 STQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQ 712
Cdd:COG1340 2 KTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 713 aELTSRSSHLDSSLNKYNSSQKVIQELNAEIArqkdsimilqtQLDSAIQKEKNCFQNMV-SKEAYEELVRKSgncqDDL 791
Cdd:COG1340 82 -ELNEKLNELREELDELRKELAELNKAGGSID-----------KLRKEIERLEWRQQTEVlSPEEEKELVEKI----KEL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 792 TQALEKLTQATSETKSLNRSLQQTQERKAQLEDeiaaYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQW 871
Cdd:COG1340 146 EKELEKAKKALEKNEKLKELRAELKELRKEAEE----IHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEA 221
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720428051 872 QRQHQSDLKMLAAKESQLREFQEEMATLRESLLADEKE 909
Cdd:COG1340 222 QEKADELHEEIIELQKELRELRKELKKLRKKQRALKRE 259
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
476-749 |
4.55e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 476 EKLQCTTKELDTSLQEARQSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLL 555
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREEL--EQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 556 QDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ 635
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 636 VSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAEL 715
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....
gi 1720428051 716 TSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDS 749
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLL 302
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
554-712 |
4.57e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 44.22 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 554 LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHS 633
Cdd:pfam05262 177 ISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 634 TQVSEQKQReltNSIRKLEEELLEIKGLLEEKREQ--LKKSKEQEKALEEEIEALRQEAKRKEKMAK----EHLRKLDEE 707
Cdd:pfam05262 257 AKNLPKPAD---TSSPKEDKQVAENQKREIEKAQIeiKKNDEEALKAKDHKAFDLKQESKASEKEAEdkelEAQKKREPV 333
|
....*
gi 1720428051 708 KENLQ 712
Cdd:pfam05262 334 AEDLQ 338
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
605-993 |
4.77e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 605 RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIE 684
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 685 ALRQEAKRKE---KMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAI 761
Cdd:TIGR04523 114 NDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 762 QKEKNCFQNMVSKEAYEELVRKsgncqddltqALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELK 841
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKS----------LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 842 KLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQ-----HQSDLKMLAAKESQLREFQEEMATLRESLLADEKEPYSPPAK 916
Cdd:TIGR04523 264 KIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 917 LTPKETCRHHRENDQIMNNVEQWAKEQKIanEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 993
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEI--EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
559-747 |
4.86e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 559 QKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQR--RLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 636
Cdd:pfam17380 338 EQERMAMERERELERIRQE----ERKRELERIRQEEIAMEISRMREleRLQMERQQKNERVRQELEAARKVKILEEERQR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 637 SEQKQRELTNSIRKLEEEL--LEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-EAKRKEK---MAKEHLRKLDEEKEN 710
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEArqREVRRLEEERAREMERVRLEEQERQQQVERLRQqEEERKRKkleLEKEKRDRKRAEEQR 493
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720428051 711 ---LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQK 747
Cdd:pfam17380 494 rkiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
562-876 |
6.01e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 562 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDElfhstqvSEQKQ 641
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA-------AQAEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 642 RELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSH 721
Cdd:COG4372 97 AQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 722 LDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQA 801
Cdd:COG4372 177 SEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVI 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428051 802 TSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ 876
Cdd:COG4372 257 LKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
650-783 |
6.66e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 650 KLEEELLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLdeEKENLQAEltsrsSHLDSSLNK 728
Cdd:PRK12704 32 KIKEAEEEAKRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKL--EKRLLQKE-----ENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 729 YNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQ---NMVSKEAYEELVRK 783
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLTAEEAKEILLEK 162
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
452-826 |
7.13e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLMQVQNSLREKEA-------ELEKLQCTTKELDTSLQEAR----------QSTSKIdcEALRAEIQKLKDS 514
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYrlvemarELEELSARESDLEQDYQAASdhlnlvqtalRQQEKI--ERYQEDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 515 LEEAREQLKVSDQNLTQSKEEAHLS-------ASSLEDAHRKIE---NCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEE 584
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARLEAAeeevdslKSQLADYQQALDvqqTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 585 RKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEQKQRELTN---SIRKLEEELLEIKGL 661
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEV--ERSQAWQTARELLRryrSQQALAQRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 662 LEEKREQLkkskEQEKALEEEIEALRQEAKRKEKMAKEhlrkLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNA 741
Cdd:COG3096 521 LAELEQRL----RQQQNAERLLEEFCQRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRA 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 742 EIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAyeelvrksgnCQDDLTQALEKLTQATSETkslnrslQQTQERKAQ 821
Cdd:COG3096 593 RIKELAARAPAWLAAQDALERLREQSGEALADSQE----------VTAAMQQLLEREREATVER-------DELAARKQA 655
|
....*
gi 1720428051 822 LEDEI 826
Cdd:COG3096 656 LESQI 660
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
352-734 |
7.52e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 352 LKHLQEQKDSQCLHVEEYQNLVKDLRM--ELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYrlqdl 429
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY----- 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 430 qQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAEiq 509
Cdd:PTZ00121 1602 -EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE-- 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 510 KLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAhRKIEncllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNR 589
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK-KKAE----ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 590 QRLQELSSELSEGQRRLSNAEKEKSLL---------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE-ELLEIK 659
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVieeeldeedEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmEDSAIK 1833
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720428051 660 GLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQK 734
Cdd:PTZ00121 1834 EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
556-681 |
7.64e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 556 QDKQK-EEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRR----LSNAEKEkslLQKTLDEDEKKIDEL 630
Cdd:PRK00409 513 EDKEKlNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEedklLEEAEKE---AQQAIKEAKKEADEI 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 631 FHSTQVSEQKQRELTNSiRKLEEELLEIKGLLEEKREQLKKSKEQEKALEE 681
Cdd:PRK00409 590 IKELRQLQKGGYASVKA-HELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
557-903 |
8.09e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.41 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 557 DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQV 636
Cdd:COG5185 168 LTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELED 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 637 SEQKQRELTNSIRKLEEELLEIkglLEEKREQLKKSKEQEKALEEEIEALRQEAKrkEKMAKEHLRKLDEEKENLQAELT 716
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEK---LGENAESSKRLNENANNLIKQFENTKEKIA--EYTKSIDIKKATESLEEQLAAAE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 717 SRSSHLDSSLnkynssqkviqELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALE 796
Cdd:COG5185 323 AEQELEESKR-----------ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 797 KLTQATSETKslnrslQQTQERKAQLEDEIAAYEERMKKLNMELKKL-------QGFQQQSEQEVHNFDKKLEEMSNQVL 869
Cdd:COG5185 392 SLDEIPQNQR------GYAQEILATLEDTLKAADRQIEELQRQIEQAtssneevSKLLNELISELNKVMREADEESQSRL 465
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720428051 870 QWQRQH--QSDLKMLAAKESQLREFQEEMATLRESL 903
Cdd:COG5185 466 EEAYDEinRSVRSKKEDLNEELTQIESRVSTLKATL 501
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
559-895 |
8.72e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 559 QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQ-VS 637
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQdKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 638 EQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKmakEHLRKLDEEKENLQAELTS 717
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK---EEKLKAQEEELRALEEELK 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 718 RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSaiqkEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEK 797
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE----EELERLEEEITKEELLQELLLKEEELEEQKLKDE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 798 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQG------FQQQSEQEVHNFDKKLEEMSNQVLQW 871
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEepeellLEEADEKEKEENNKEEEEERNKRLLL 967
|
330 340
....*....|....*....|....
gi 1720428051 872 QRQHQSDLKMLAAKESQLREFQEE 895
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYN 991
|
|
| FapA |
pfam03961 |
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta ... |
639-721 |
9.61e-04 |
|
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta solenoid domain of FapA and its homologs. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Pssm-ID: 461111 [Multi-domain] Cd Length: 272 Bit Score: 42.29 E-value: 9.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 639 QKQRELTNSIRKLEEELLEIKGLLEekreqlKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSR 718
Cdd:pfam03961 156 EKLEELEKELEELEEELEKLKKRLK------KLPKKARGQLPPEKREQLEKLLETKNKLSEELEELEEELKELKEELESL 229
|
...
gi 1720428051 719 SSH 721
Cdd:pfam03961 230 LGE 232
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
454-693 |
9.98e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.27 E-value: 9.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 454 LHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSL---------QEARQSTSKIDCEALRAEIQKLKDSLEEAR----- 519
Cdd:pfam10174 477 NKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGlkkdsklksLEIAVEQKKEECSKLENQLKKAHNAEEAVRtnpei 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 520 -EQLKVSDQNLTQSKEEAHLSASSLE---DAHRKIENcllQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQEL 595
Cdd:pfam10174 557 nDRIRLLEQEVARYKEESGKAQAEVErllGILREVEN---EKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKK 633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 596 SSELSEGQRRLSNAEKEKS---LLQKTLDEDEKKIDEL------FHSTQVS-EQKQRELTN---SIRKLEEELLEIK--- 659
Cdd:pfam10174 634 GAQLLEEARRREDNLADNSqqlQLEELMGALEKTRQELdatkarLSSTQQSlAEKDGHLTNlraERRKQLEEILEMKqea 713
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1720428051 660 ------------GLLEEKREQLKKSKEQEKALEEEIEALRQEAKRK 693
Cdd:pfam10174 714 llaaisekdaniALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQ 759
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
355-903 |
1.08e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 355 LQEQKDSQCLHVEEYQNLVKDLR---MELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKD--KETVFLQYRLQDL 429
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKssnLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNnlKSALNELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 430 QQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtSLQEARQSTSKIDcealrAEIQ 509
Cdd:PRK01156 251 KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKN---DIENKKQILSNID-----AEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 510 KLKDSLEEAREQLKVSDQNLTQSKEeahlsassledaHRKIENCLLQDKQKEEvikDLQSQLHKLQKESSKIEEERKHNR 589
Cdd:PRK01156 323 KYHAIIKKLSVLQKDYNDYIKKKSR------------YDDLNNQILELEGYEM---DYNSYLKSIESLKKKIEEYSKNIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 590 QRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLE-EELLEIKG--LLEEKR 666
Cdd:PRK01156 388 RMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgQSVCPVCGttLGEEKS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 667 EQLKKSKEQEKA-LEEEI-----------EALRQEAKRKEKMAKEHLRKL---DEEKENLQAELTS---RSSHLDSSLNK 728
Cdd:PRK01156 468 NHIINHYNEKKSrLEEKIreieievkdidEKIVDLKKRKEYLESEEINKSineYNKIESARADLEDikiKINELKDKHDK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 729 YNSSQKVIQELNAEIARQK-DSIMILQTQLDS----AIQKEKNCFQNMVsKEAYEELVRKSGNCQDDLTQALEKLTQATS 803
Cdd:PRK01156 548 YEEIKNRYKSLKLEDLDSKrTSWLNALAVISLidieTNRSRSNEIKKQL-NDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 804 ETKSLNRSLQQTQERKAQLED---EIAAYEER---MKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQ- 876
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIEKlrgKIDNYKKQiaeIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEi 706
|
570 580
....*....|....*....|....*....
gi 1720428051 877 --SDLKMLAAKESQLREFQEEMATLRESL 903
Cdd:PRK01156 707 lrTRINELSDRINDINETLESMKKIKKAI 735
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
467-681 |
1.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 467 SLREKEAELEKLQCTTKELDtsLQEARQSTSKID-CEALRAEIQKLKDSLEEAREQLkvsdQNLTQSKEEAHLSASSLED 545
Cdd:COG4717 50 RLEKEADELFKPQGRKPELN--LKELKELEEELKeAEEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 546 AHRKIENcLLQDKQKEEVIKDLQSQLHKLQKEsskiEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSL-LQKTLDEDE 624
Cdd:COG4717 124 LLQLLPL-YQELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDLA 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 625 KKIDELfhstqvsEQKQRELTNSIRKLEEELLEikglLEEKREQLKKSKEQEKALEE 681
Cdd:COG4717 199 EELEEL-------QQRLAELEEELEEAQEELEE----LEEELEQLENELEAAALEER 244
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
557-704 |
1.13e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.77 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 557 DKQKEEVIKDLQSQLHKLQKESSK-IEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEkkiDELFHSTQ 635
Cdd:PRK12705 36 ERILQEAQKEAEEKLEAALLEAKElLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLE---NQLEEREK 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 636 VSEQKQRELTNSIRKLEEELLEIKGLL-EEKREQLKKSKEQEkaLEEEIEalrQEAKRKEKMAKEHLRKL 704
Cdd:PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTpEQARKLLLKLLDAE--LEEEKA---QRVKKIEEEADLEAERK 177
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
448-814 |
1.17e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNS--LREKEAELEKLQCTTKELDtSLQEARQSTSKIDCEALRAEIQKLKDSLEEAREQLKVS 525
Cdd:pfam09731 124 QEKEKALEEVLKEAISKAESatAVAKEAKDDAIQAVKAHTD-SLKEASDTAEISREKATDSALQKAEALAEKLKEVINLA 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 526 DQNLTQSKEEahLSASSLEDAHRKIENcLLQDKQKEEVIKDLQSQLHKLQKESskiEEERKHNRQRLQ----ELSSELSE 601
Cdd:pfam09731 203 KQSEEEAAPP--LLDAAPETPPKLPEH-LDNVEEKVEKAQSLAKLVDQYKELV---ASERIVFQQELVsifpDIIPVLKE 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 602 GQrrLSNAEKEKSLLQKTLDEDEKkidelfHSTQVSEQKQRELtnsiRKLEEELLEIKGLLEEKREQLkkSKEQEKALEE 681
Cdd:pfam09731 277 DN--LLSNDDLNSLIAHAHREIDQ------LSKKLAELKKREE----KHIERALEKQKEELDKLAEEL--SARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 682 EIEALRQEAKRKEkmakEHLRKLDEEKenLQAELTSRSSHLDSSLNKYNSSQKviQELNAEIARqkdsimilqtQLDSAI 761
Cdd:pfam09731 343 DEAQLRLEFERER----EEIRESYEEK--LRTELERQAEAHEEHLKDVLVEQE--IELQREFLQ----------DIKEKV 404
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1720428051 762 QKEKNCFQNMVSkEAYEELvrksgncqddltQALEKLTQATSETKSLNRSLQQ 814
Cdd:pfam09731 405 EEERAGRLLKLN-ELLANL------------KGLEKATSSHSEVEDENRKAQQ 444
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
558-828 |
1.20e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.11 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 558 KQKEEVIKDLQSQLhklQKESSK-------IEEERKHNRQRLQELSSELSE-GQRRLSNAEKEKSllQKTLDEDEKKIDE 629
Cdd:PTZ00108 995 KRKEYLLGKLEREL---ARLSNKvrfikhvINGELVITNAKKKDLVKELKKlGYVRFKDIIKKKS--EKITAEEEEGAEE 1069
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 630 LFHSTQVSEQKQRE---------------LTN-SIRKLEEELLEIKGLLEEKR---------EQLKKSKEQEKALEEEIE 684
Cdd:PTZ00108 1070 DDEADDEDDEEELGaavsydyllsmpiwsLTKeKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEE 1149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 685 ALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKY----NSSQKVIQELNAEIARQKDSIMILQTQLDSA 760
Cdd:PTZ00108 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVvgnsKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 761 IQKEKNCFQNMV---SKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAA 828
Cdd:PTZ00108 1230 EQKTKPKKSSVKrlkSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
560-698 |
1.67e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 560 KEEVIKDLQSQLHKLqkeSSKIEEERKHNrqrlQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhstqvsEQ 639
Cdd:PRK09039 51 KDSALDRLNSQIAEL---ADLLSLERQGN----QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA-------EG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720428051 640 KQRELTnsirkleEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQ-----EAKRKEKMAK 698
Cdd:PRK09039 117 RAGELA-------QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAaldasEKRDRESQAK 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
504-986 |
1.90e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 504 LRAEIQKLKDsleeAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE 583
Cdd:PRK01156 178 LRAEISNIDY----LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 584 ERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTN----------SIRKLEE 653
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNidaeinkyhaIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 654 ------ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSrSSHLDSSLN 727
Cdd:PRK01156 334 lqkdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEID-PDAIKKELN 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 728 KYNSSqkvIQELNAEIARqkdsimiLQTQLDSAIQKEKNCFQNM---------------VSKEAYEELVRKSGNcqdDLT 792
Cdd:PRK01156 413 EINVK---LQDISSKVSS-------LNQRIRALRENLDELSRNMemlngqsvcpvcgttLGEEKSNHIINHYNE---KKS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 793 QALEKLTQATSETKSLNRSLQQTQERKAQLE----DEIAAYEERMKKLNMELKKLQgfqqQSEQEVHNFDKKLEEMSNQV 868
Cdd:PRK01156 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLEseeiNKSINEYNKIESARADLEDIK----IKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 869 ----LQWQRQHQSD-LKMLA--------AKESQLREFQEEMATLRESLlaDEKEPYSPPAKLTPKETCRHHRENDQIMNN 935
Cdd:PRK01156 556 kslkLEDLDSKRTSwLNALAvislidieTNRSRSNEIKKQLNDLESRL--QEIEIGFPDDKSYIDKSIREIENEANNLNN 633
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 936 VEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLK 986
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
448-714 |
2.01e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 41.78 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTslqearqstsKIDCEALRAEIQKLKDSLEEAREQLKVSDQ 527
Cdd:pfam02029 80 QEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEE----------KRDSRLGRYKEEETEIREKEYQENKWSTEV 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 528 NLTQSKEEAHlsasslEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEE-ERKHNRQRLQELSSELSE----- 601
Cdd:pfam02029 150 RQAEEEGEEE------EDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDqKRGHPEVKSQNGEEEVTKlkvtt 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 602 -GQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRE-LTNSIRKLEEELLEIKglleekreqlKKSKEQEKAL 679
Cdd:pfam02029 224 kRRQGGLSQSQEREEEAEVFLEAEQKLEELRRRRQEKESEEFEkLRQKQQEAELELEELK----------KKREERRKLL 293
|
250 260 270
....*....|....*....|....*....|....*
gi 1720428051 680 EEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAE 714
Cdd:pfam02029 294 EEEEQRRKQEEAERKLREEEEKRRMKEEIERRRAE 328
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
347-996 |
2.02e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 347 DITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFLQYRL 426
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 427 QDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLmqvqnslreKEAELEKLQCTTKELDTSLQEARQSTSKIDcealra 506
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL---------KELEIKREAEEEEEEELEKLQEKLEQLEEE------ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 507 eiQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKIEEERK 586
Cdd:pfam02463 375 --LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 587 HNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKR 666
Cdd:pfam02463 453 LEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 667 E-QLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIAR 745
Cdd:pfam02463 533 DlGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKAT 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 746 QKDSIMILQTQLDSAIQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQaTSETKSLNRSLQQTQERKAQLEDE 825
Cdd:pfam02463 613 LEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKAS-LSELTKELLEIQELQEKAESELAK 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 826 IAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQwqrqhqsDLKMLAAKESQLREFQEEMATLRESLLA 905
Cdd:pfam02463 692 EEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINE-------ELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 906 DEKEpysppakLTPKETCRHHRENDQIMNNVEQWAKEQKIANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKL 985
Cdd:pfam02463 765 EKSE-------LSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE 837
|
650
....*....|.
gi 1720428051 986 KNEIEEKKLKA 996
Cdd:pfam02463 838 LALELKEEQKL 848
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
523-699 |
2.15e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 40.64 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 523 KVSDQNLTQSKEEAhlsASSLEDAHRKIENcllqdkQKEEVIKDLQSQLHKLQKEsskIEEERKHNRQRLQELSSELseg 602
Cdd:pfam12072 23 SIAEAKIGSAEELA---KRIIEEAKKEAET------KKKEALLEAKEEIHKLRAE---AERELKERRNELQRQERRL--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 603 QRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGL-LEEKREQLKKSKEQEKALE- 680
Cdd:pfam12072 88 LQKEETLDRKDESLEKKEESLEKKEKELEAQQQQLEEKEEELEELIEEQRQELERISGLtSEEAKEILLDEVEEELRHEa 167
|
170 180
....*....|....*....|.
gi 1720428051 681 -EEIEALRQEAKRK-EKMAKE 699
Cdd:pfam12072 168 aVMIKEIEEEAKEEaDKKAKE 188
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
450-599 |
2.17e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 450 KDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEArqstskidcEALRAEIQKLKDSLEEAREQLKVSDQNL 529
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA---------EAERSRLQALLAELAGAGAAAEGRAGEL 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 530 TQS-KEEAHLSASSLedahRKIEncLLQDKqkeevIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSEL 599
Cdd:PRK09039 122 AQElDSEKQVSARAL----AQVE--LLNQQ-----IAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
452-698 |
2.18e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.43 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 452 ERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVSDQNLTQ 531
Cdd:COG1340 22 EEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKR-----DELNEKVKELKEERDELNEKLNELREELDE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 532 SKEEA---HLSASSLEDAHRKIE--------NCLLQDKQKE--EVIKDLQSQLHKLQKESsKIEEERKHNRQRLQELSSE 598
Cdd:COG1340 97 LRKELaelNKAGGSIDKLRKEIErlewrqqtEVLSPEEEKElvEKIKELEKELEKAKKAL-EKNEKLKELRAELKELRKE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 599 LSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA 678
Cdd:COG1340 176 AEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRA 255
|
250 260
....*....|....*....|
gi 1720428051 679 LEEEIEALRQEAKRKEKMAK 698
Cdd:COG1340 256 LKREKEKEELEEKAEEIFEK 275
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
416-630 |
2.19e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 416 DKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQcttkeldtslqearqs 495
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 496 tskidcealrAEIQKLKDSLEEAREQLKVSDQNLtqSKEEAHLSASSLEDAHRKIEN-CLLQDKQKeEVIKDLQSQLHKL 574
Cdd:COG3883 79 ----------AEIEERREELGERARALYRSGGSV--SYLDVLLGSESFSDFLDRLSAlSKIADADA-DLLEELKADKAEL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720428051 575 QKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 630
Cdd:COG3883 146 EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
662-903 |
2.33e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 662 LEEKREQLKKSKEQEKALEEeIEALRQEAKRkekmAKEHLRKLDEEKENLQAELTSRsshldsslnKYNSSQKVIQELNA 741
Cdd:COG4913 237 LERAHEALEDAREQIELLEP-IRELAERYAA----ARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 742 EIARQKDSIMILQTQLDSAIQKEkncfqnmvskEAYEELVRKSGncqddlTQALEKLtqatsetkslnrslqqtQERKAQ 821
Cdd:COG4913 303 ELARLEAELERLEARLDALREEL----------DELEAQIRGNG------GDRLEQL-----------------EREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 822 LEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE 901
Cdd:COG4913 350 LERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
..
gi 1720428051 902 SL 903
Cdd:COG4913 430 SL 431
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
585-864 |
2.37e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 585 RKHNRQRLQELSSELSEGQRRLSNA----EKEKSLL-------QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEE 653
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESnelhEKQKFYLrqsvidlQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 654 ELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQaelTSRSSHLDSSLNKynssq 733
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMS---TMHFRSLGSAISK----- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 734 kVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSK--EAYEELVRKSgncQDDLTQALEKLTQATSETKSLNRS 811
Cdd:pfam15921 225 -ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQhqDRIEQLISEH---EVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 812 LQQTQER-----------------------------KAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLE 862
Cdd:pfam15921 301 LEIIQEQarnqnsmymrqlsdlestvsqlrselreaKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ 380
|
..
gi 1720428051 863 EM 864
Cdd:pfam15921 381 KL 382
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
649-998 |
2.87e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 649 RKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLD--SSL 726
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKrfSLL 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 727 NKYNSSQKVIQELnaEIARQKdsimilQTQLDSAIQKEKNCFQnmVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETK 806
Cdd:COG5022 865 KKETIYLQSAQRV--ELAERQ------LQELKIDVKSISSLKL--VNLELESEIIELKKSLSSDLIENLEFKTELIARLK 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 807 SLNRSLQ---------QTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQS---EQEVHNFDKKLEEmsnqvlqwqrq 874
Cdd:COG5022 935 KLLNNIDleegpsieyVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGnkaNSELKNFKKELAE----------- 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 875 HQSDLKMLAAKESQLREFQEEMATLResllADEKEPYSPPAKLtpketcrhhrendQIMNNVEqwakEQKIANEKLGNKL 954
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQ----SASKIISSESTEL-------------SILKPLQ----KLKGLLLLENNQL 1062
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1720428051 955 REQVKYIaKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKAGN 998
Cdd:COG5022 1063 QARYKAL-KLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
461-765 |
3.06e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.21 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 461 LMQVQNSLREKEAELEKLQCTTKELDTSLQEARQstskiDCEALRAEIQKLKDSLEEAREQlkVSDQNLTQSKEEAHLSA 540
Cdd:pfam19220 50 LLELEALLAQERAAYGKLRRELAGLTRRLSAAEG-----ELEELVARLAKLEAALREAEAA--KEELRIELRDKTAQAEA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 541 --SSLEDAHRKIENCLLQDK-------QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEK 611
Cdd:pfam19220 123 leRQLAAETEQNRALEEENKalreeaqAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELET 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 612 EKSLLQKTLDEDEKKID-------------ELFHSTQVSEQ-----KQRELTNSIRKLEEELLEIKGLLEEKREQL---- 669
Cdd:pfam19220 203 QLDATRARLRALEGQLAaeqaereraeaqlEEAVEAHRAERaslrmKLEALTARAAATEQLLAEARNQLRDRDEAIraae 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 670 KKSKEQEKA---LEEEIEALRQEAKRKEKMAKEHLR---KLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQELNAEI 743
Cdd:pfam19220 283 RRLKEASIErdtLERRLAGLEADLERRTQQFQEMQRaraELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKRF 362
|
330 340
....*....|....*....|..
gi 1720428051 744 ARQKDSIMILQTQLDSAIQKEK 765
Cdd:pfam19220 363 EVERAALEQANRRLKEELQRER 384
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
448-689 |
3.10e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.48 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 448 QDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAE----IQKLKDSLEEAREQLK 523
Cdd:COG5185 274 AESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKREtetgIQNLTAEIEQGQESLT 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 524 vSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQ-DKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEG 602
Cdd:COG5185 354 -ENLEAIKEEIENIVGEVELSKSSEELDSFKDTiESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 603 QRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKA-LEE 681
Cdd:COG5185 433 TSSNEEVSKLLNELISELNKVMREADEE--SQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAkLER 510
|
....*...
gi 1720428051 682 EIEALRQE 689
Cdd:COG5185 511 QLEGVRSK 518
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
346-764 |
3.56e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.28 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 346 EDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHglREETSCVIEKKDKETVFL-QY 424
Cdd:pfam07111 245 QELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFP--KKCRSLLNRWREKVFALMvQL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 425 RLQDLQQQYTESQKLSLKKDKLlqdkdERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEARqstskidcEAL 504
Cdd:pfam07111 323 KAQDLEHRDSVKQLRGQVAELQ-----EQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQ--------EAR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 505 RAEIQKlkdsLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKI---ENCLLQDKQKEEVIKDLQSQ---LHKLQKES 578
Cdd:pfam07111 390 RRQQQQ----TASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIpslSNRLSYAVRKVHTIKGLMARkvaLAQLRQES 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 579 SKIEEERKHNRQRLQELSSELSEGQRRLsNAEKEKS--LLQKtldedekkidELFHSTQVSEQKQRELTNSIRKLEEELL 656
Cdd:pfam07111 466 CPPPPPAPPVDADLSLELEQLREERNRL-DAELQLSahLIQQ----------EVGRAREQGEAERQQLSEVAQQLEQELQ 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 657 EIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLR-KLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 735
Cdd:pfam07111 535 RAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQeKVAEVETRLREQLSDTKRRLNEARREQAKAVVS 614
|
410 420
....*....|....*....|....*....
gi 1720428051 736 IQELNAEIARQKDSIMILQTQLDSAIQKE 764
Cdd:pfam07111 615 LRQIQHRATQEKERNQELRRLQDEARKEE 643
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
618-901 |
3.62e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 618 KTLDEDEKkIDELFHSTQ----VSEQKQREltnSIRKLEEELL-EIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKR 692
Cdd:pfam17380 263 QTMTENEF-LNQLLHIVQhqkaVSERQQQE---KFEKMEQERLrQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 693 KEKMAKEHLRKLDE-EKENLQAELTS-RSSHLDSSLNKYNSSQKVIQELNAEIARQKDSimiLQTQLDSAIQKEKNCFQN 770
Cdd:pfam17380 339 QERMAMERERELERiRQEERKRELERiRQEEIAMEISRMRELERLQMERQQKNERVRQE---LEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 771 MVSKEAYEELVRKSGNCQDDLTQALEKltqatSETKSLNRSLQQTQERKAQLEdEIAAYEERMKKLNMELKKLQGFQQQS 850
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREVRRLEE-----ERAREMERVRLEEQERQQQVE-RLRQQEEERKRKKLELEKEKRDRKRA 489
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720428051 851 EQEVHN-FDKKLEEMSNQVLQWQRQHQ------SDLKMLAAKESQLREFQEEMATLRE 901
Cdd:pfam17380 490 EEQRRKiLEKELEERKQAMIEEERKRKllekemEERQKAIYEEERRREAEEERRKQQE 547
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
451-868 |
3.71e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.36 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 451 DERLHELEK-----NLMQVQNSLREKEAELEKLQCTTKELDTSLQEARQSTskidcEALRAEIQKLKDSLEEAREQLKVS 525
Cdd:PRK04778 85 EEQLFEAEElndkfRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESE-----EKNREEVEQLKDLYRELRKSLLAN 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 526 DQNLTQSKEEAHLSASSLEDAHRKIENclLQDK----QKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSE 601
Cdd:PRK04778 160 RFSFGPALDELEKQLENLEEEFSQFVE--LTESgdyvEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 602 GQRRLsnaEKEKSLLqktldeDEKKIDELFHstqvseqkqrELTNSIRKLEEELLEIKglLEEKREQLKKSKEQEKAL-- 679
Cdd:PRK04778 238 GYREL---VEEGYHL------DHLDIEKEIQ----------DLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLyd 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 680 --EEEIEAlRQEAKRKEKMAKEHLRKLDEEKENLQAELT--SRSSHL-DSSLNKYNSSQKVIQELNA-------EIARQK 747
Cdd:PRK04778 297 ilEREVKA-RKYVEKNSDTLPDFLEHAKEQNKELKEEIDrvKQSYTLnESELESVRQLEKQLESLEKqydeiteRIAEQE 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 748 -------DSIMILQTQLDsAIQKEKNCFQNMVSKEAYEELvrksgncqddltQALEKLTQATSETKSLNRSLQQTQ---- 816
Cdd:PRK04778 376 iayselqEELEEILKQLE-EIEKEQEKLSEMLQGLRKDEL------------EAREKLERYRNKLHEIKRYLEKSNlpgl 442
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 817 -----ERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQV 868
Cdd:PRK04778 443 pedylEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENA 499
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
562-842 |
4.29e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.28 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 562 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQ 641
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 642 RELTNSIRKLEEELLEIKglleEKREQLKKSKEQEKALEEEIEALRQEAKRkEKMAKEHLRKLDEEKENLQAELtsrssh 721
Cdd:COG1340 81 DELNEKLNELREELDELR----KELAELNKAGGSIDKLRKEIERLEWRQQT-EVLSPEEEKELVEKIKELEKEL------ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 722 ldSSLNKYNSSQKVIQELNAEIARQKDSIMILQTQLDSAIQKEKNCFQNMVS-KEAYEELVRKSgncqDDLTQALEKLTQ 800
Cdd:COG1340 150 --EKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIElYKEADELRKEA----DELHKEIVEAQE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1720428051 801 ATSEtksLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKK 842
Cdd:COG1340 224 KADE---LHEEIIELQKELRELRKELKKLRKKQRALKREKEK 262
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
451-854 |
4.41e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.19 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 451 DERLHELEKNLMQVQNSLREKEAELEKLQ---CTTKELDTSLQEarqstskidCEALRAEIQKLKDSLEEAREQLkvsDQ 527
Cdd:TIGR01612 882 DDKLNDYEKKFNDSKSLINEINKSIEEEYqniNTLKKVDEYIKI---------CENTKESIEKFHNKQNILKEIL---NK 949
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 528 NLTQSKEeahlsASSLEDAHR-KIENCLLQDKQ------KEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLqeLSSELS 600
Cdd:TIGR01612 950 NIDTIKE-----SNLIEKSYKdKFDNTLIDKINeldkafKDASLNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFD 1022
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 601 EGQRRLSNAEKEKSLLQKTLDEDEKKIDELFHStqVSEQKQRELTNSIRKLEEELLEIKGL----LEEKREQLKK----- 671
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPNIEIAIHTSIYN--IIDEIEKEIGKNIELLNKEILEEAEInitnFNEIKEKLKHynfdd 1100
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 672 -SKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEK---ENLQAELTSRSSHLDSSLNKYNSSQKViqelnAEIARQK 747
Cdd:TIGR01612 1101 fGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKkksENYIDEIKAQINDLEDVADKAISNDDP-----EEIEKKI 1175
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 748 DSIMilqtqldSAIQKEKNCFQNMvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNR-SLQQTQERKAQLEDEI 826
Cdd:TIGR01612 1176 ENIV-------TKIDKKKNIYDEI------KKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKlFLEKIDEEKKKSEHMI 1242
|
410 420
....*....|....*....|....*...
gi 1720428051 827 AAYEERMKKLNMELKKLQGFQQQSEQEV 854
Cdd:TIGR01612 1243 KAMEAYIEDLDEIKEKSPEIENEMGIEM 1270
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
724-972 |
4.56e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 724 SSLNKYNSSQkvIQELNAEIARQKDSIMILQTQLDsaIQKEkncFQNMVSKEAYEELVRKSgncqddltqalEKLTQATS 803
Cdd:PHA02562 166 SEMDKLNKDK--IRELNQQIQTLDMKIDHIQQQIK--TYNK---NIEEQRKKNGENIARKQ-----------NKYDELVE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 804 ETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGfQQQSEQEVHNF-----------------DKKLEEMSN 866
Cdd:PHA02562 228 EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS-KIEQFQKVIKMyekggvcptctqqisegPDRITKIKD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 867 QVLQWQRQHQSDLKMLAAKESQLREFQEEMATLRE--SLLADEKEPYSppakltpketcRHHRENDQIMNNVEQWAKEQK 944
Cdd:PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLElkNKISTNKQSLI-----------TLVDKAKKVKAAIEELQAEFV 375
|
250 260 270
....*....|....*....|....*....|.
gi 1720428051 945 IANE---KLGNKLREQVKYIAKLTGEKDHLH 972
Cdd:PHA02562 376 DNAEelaKLQDELDKIVKTKSELVKEKYHRG 406
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
414-903 |
4.65e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 414 KKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKEldtslqear 493
Cdd:pfam01576 149 KLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTD--------- 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 494 qstskidceaLRAEIQKLKDSLEEAREQlkvsdqnLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSQLHK 573
Cdd:pfam01576 220 ----------LQEQIAELQAQIAELRAQ-------LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLES 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 574 LQKESSKIEEERKHNRQRLQELSSELSEG-------QRRLSNAEKEKSLLQKTLDEDEKKidelfHSTQVSEQKQRELTN 646
Cdd:pfam01576 283 ERAARNKAEKQRRDLGEELEALKTELEDTldttaaqQELRSKREQEVTELKKALEEETRS-----HEAQLQEMRQKHTQA 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 647 sirkleeelleikglLEEKREQLKKSKEQEKALEEEIEALRQEAKRkekmAKEHLRKLDEEKENLQAELTSRSSHLDSSL 726
Cdd:pfam01576 358 ---------------LEELTEQLEQAKRNKANLEKAKQALESENAE----LQAELRTLQQAKQDSEHKRKKLEGQLQELQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 727 NKYNSSQKVIQELNAEIARqkdsimiLQTQLDSAiqkekncfqnmvskeayeelvrksgncQDDLTQALEKLTQATSETK 806
Cdd:pfam01576 419 ARLSESERQRAELAEKLSK-------LQSELESV---------------------------SSLLNEAEGKNIKLSKDVS 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 807 SLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMSNQVLQWQRQHQSDLKMLAAKE 886
Cdd:pfam01576 465 SLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE 544
|
490
....*....|....*..
gi 1720428051 887 SQLREFQEEMATLRESL 903
Cdd:pfam01576 545 EGKKRLQRELEALTQQL 561
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
648-744 |
5.03e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 648 IRKLEEELLEikglLEEKREQLKKskEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSShLDSSLN 727
Cdd:COG0542 413 LDELERRLEQ----LEIEKEALKK--EQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE-LEQRYG 485
|
90
....*....|....*..
gi 1720428051 728 KYNSSQKVIQELNAEIA 744
Cdd:COG0542 486 KIPELEKELAELEEELA 502
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
418-717 |
5.12e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.99 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 418 ETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLH-ELEKNLMQVQN--SLREKeaeLEKLQCTTKELDTSLQEARQ 494
Cdd:PLN03229 480 IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNylSLKYK---LDMLNEFSRAKALSEKKSKA 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 495 stskidcEALRAEI-QKLKDSLE--EAREQLKVSDQNLTQSKeeahlsASSLEDahrkienclLQDKQKEEVIKdlqsql 571
Cdd:PLN03229 557 -------EKLKAEInKKFKEVMDrpEIKEKMEALKAEVASSG------ASSGDE---------LDDDLKEKVEK------ 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 572 hklqkesskieeerkHNRQRLQELSSEL-SEGQRRLSNAEKEKSLLQKTLDEDEK-KIDELfhstqvSEQKQRELTNSIR 649
Cdd:PLN03229 609 ---------------MKKEIELELAGVLkSMGLEVIGVTKKNKDTAEQTPPPNLQeKIESL------NEEINKKIERVIR 667
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 650 kleeeLLEIKGLLEE-KREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLrKLDEEKENLQAELTS 717
Cdd:PLN03229 668 -----SSDLKSKIELlKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSS-ELKEKFEELEAELAA 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
338-552 |
5.19e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 338 PPTSSEDCEDITKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREEtscvIEKKDK 417
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE----LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 418 ETVFLQYRLQDLQQQYTE----SQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKELDTSLQEAR 493
Cdd:COG4942 91 EIAELRAELEAQKEELAEllraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 494 QSTSKIdcEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIEN 552
Cdd:COG4942 171 AERAEL--EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
457-738 |
5.22e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 457 LEKnLMQVQNSLREKEAELEKLQCTT------KELDtSLQEARQSTSKIDcEALRAEIQKLK-----DSLEEAREQLKVS 525
Cdd:PTZ00108 1101 KEK-VEKLNAELEKKEKELEKLKNTTpkdmwlEDLD-KFEEALEEQEEVE-EKEIAKEQRLKsktkgKASKLRKPKLKKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 526 DQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKEEVIKDLQSqlhklqkESSKIEEERKHNRQRLQELSSELSEGQRR 605
Cdd:PTZ00108 1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSS-------GSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 606 LSNAEKEKSLLQKTLDEDEKKIDELFHSTQVSEQKQrelTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEA 685
Cdd:PTZ00108 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPP---PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKS 1327
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1720428051 686 lRQEAKRKEKMAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVIQE 738
Cdd:PTZ00108 1328 -EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
502-842 |
5.53e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.61 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 502 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAhlsassLEDAHRKIENCLLQDKQKEEVIKDLQSQLHKLQKESSKI 581
Cdd:PLN03229 425 EAVKTPVRELEGEVEKLKEQILKAKESSSKPSELA------LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 582 EEERKHNRQRLQELSSELS-EGQRRLSNAEKEKSLLQKtLDedekKIDELFHSTQVSEQKQR--ELTNSIRKLEEELLEi 658
Cdd:PLN03229 499 NSQDQLMHPVLMEKIEKLKdEFNKRLSRAPNYLSLKYK-LD----MLNEFSRAKALSEKKSKaeKLKAEINKKFKEVMD- 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 659 KGLLEEKREQLKKSKEQEKAleEEIEALRQEAKRK-EKMAKEHLRKLDE--EKENLQAELTSRSSHLDSSLNKYNSSQKV 735
Cdd:PLN03229 573 RPEIKEKMEALKAEVASSGA--SSGDELDDDLKEKvEKMKKEIELELAGvlKSMGLEVIGVTKKNKDTAEQTPPPNLQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 736 IQELNAEIARQKDSImILQTQLDSAIQKEKncfqnmvskeayEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQT 815
Cdd:PLN03229 651 IESLNEEINKKIERV-IRSSDLKSKIELLK------------LEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSEL 717
|
330 340
....*....|....*....|....*..
gi 1720428051 816 QERKAQLEDEIAAYEERMKKLNMELKK 842
Cdd:PLN03229 718 KEKFEELEAELAAARETAAESNGSLKN 744
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
42-718 |
5.57e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 42 KGLKNEAGERDRDVSNLNSKLLSLQLDIKNLHDVCKRQGKTLQENQLCVEEAMLKANHNKKQAQTL------VFTDNQMD 115
Cdd:TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLegssdrILELDQEL 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 116 FRVNKQYHLRQLQQLKKKLLTLQQELEFRTQELQASYCSLLQYQSILEKQTSDLLVLHRHCKLKEDEvilYEEEMGNHSK 195
Cdd:TIGR00606 481 RKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDK---DEQIRKIKSR 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 196 STGEKLHLAQE--QLALAGDKILSLERSLNLYRDKYQTSLSNIELLECQVKMLEGELSGLIGQDPENKGDHPKVriytsp 273
Cdd:TIGR00606 558 HSDELTSLLGYfpNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV------ 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 274 CVIQEHQETLKRLSEVWQKVSEQ-----------DDLIQELRNKLACSNSLVLEREEALIKLQAEFASYTATHRHPPTSS 342
Cdd:TIGR00606 632 CGSQDEESDLERLKEEIEKSSKQramlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKL 711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 343 EDCEditKILKHLQEQKDSQCLHVEEYQNLVKDLRMELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKDKETVFL 422
Cdd:TIGR00606 712 KSTE---SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCL 788
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 423 ---------QYRLQDLQQQY---------TESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEKLQCTTKE 484
Cdd:TIGR00606 789 tdvtimerfQMELKDVERKIaqqaaklqgSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 485 LDT---SLQEARQSTSKID--CEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQ 559
Cdd:TIGR00606 869 LKSeklQIGTNLQRRQQFEeqLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKE 948
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 560 KEEVIKDLQSQLHKLQKESSkiEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKtlDEDEKKIDELFHSTQVSEQ 639
Cdd:TIGR00606 949 KVKNIHGYMKDIENKIQDGK--DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ--DIDTQKIQERWLQDNLTLR 1024
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 640 KQReltNSIRKLEEELLEIKGLLEEkrEQLKKSKEQEKALEEEIEALrqeaKRKEKMAKEHLRKLDEEKENLQAELTSR 718
Cdd:TIGR00606 1025 KRE---NELKEVEEELKQHLKEMGQ--MQVLQMKQEHQKLEENIDLI----KRNHVLALGRQKGYEKEIKHFKKELREP 1094
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
551-695 |
6.37e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 39.12 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 551 ENCLLQDKQKEEvIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKT---LDEDEKKI 627
Cdd:pfam13851 23 NNLELIKSLKEE-IAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKDKQSLKNLkarLKVLEKEL 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720428051 628 DELFHSTQVSEQKqreltnsIRKLEEELLEIKGLLEEK-REQLKKSKEQEKALEEEIEALRQEAKRKEK 695
Cdd:pfam13851 102 KDLKWEHEVLEQR-------FEKVERERDELYDKFEAAiQDVQQKTGLKNLLLEKKLQALGETLEKKEA 163
|
|
| Mod_r |
pfam07200 |
Modifier of rudimentary (Mod(r)) protein; This family represents a conserved region ... |
620-735 |
6.48e-03 |
|
Modifier of rudimentary (Mod(r)) protein; This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic, and both of these regions are represented in this family. Members of this family include the Vps37 subunit of the endosomal sorting complex ESCRT-I, a complex involved in recruiting transport machinery for protein sorting at the multivesicular body (MVB). The yeast ESCRT-I complex consists of three proteins (Vps23, Vps28 and Vps37). The mammalian homolog of Vps37 interacts with Tsg101 (Pfam: PF05743) through its mod(r) domain and its function is essential for lysosomal sorting of EGF receptors.
Pssm-ID: 462117 [Multi-domain] Cd Length: 146 Bit Score: 38.37 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 620 LDEDEKKIDELFHST---QVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRK-EK 695
Cdd:pfam07200 11 LLNDEDKLDAFVHSLpqvKALQAEKEELLAENESLAEENLSLEPELEELRSQLQELLEELKALKSEYEEKEQELDELlSK 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1720428051 696 MAKEHL--------RKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKV 735
Cdd:pfam07200 91 FSPDALlarlqaaaAEAEEESEALAESFLEGEIDLDEFLKQFKEKRKL 138
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
398-748 |
6.65e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 398 ELDLHGLREETSCVIEKKDKETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLHELEKNLMQVQNSLREKEAELEK 477
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 478 LQCTTKELDTSLQEARQSTSKI--DCEALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENC-- 553
Cdd:COG4372 92 AQAELAQAQEELESLQEEAEELqeELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALeq 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 554 ---LLQDKQKEEVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDEL 630
Cdd:COG4372 172 elqALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 631 FHSTQVSEQKQRELTNSIRKLEEELLEIKGLLEEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKEN 710
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
330 340 350
....*....|....*....|....*....|....*...
gi 1720428051 711 LQAELTSRSSHLDSSLNKYNSSQKVIQELNAEIARQKD 748
Cdd:COG4372 332 LAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
617-746 |
6.90e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 617 QKTLDEDEKKIDELFHSTQVSEQKQRELTNSIRKLEEELLE-------IKGLLEEKREQLKKSKEQEKALEEEIEALRQE 689
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAaeaersrLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720428051 690 AKRkekmAKEHLRKLDEEKENLQAELTSRSSHLDSSLNKYNSSQKVI----QELNAEIARQ 746
Cdd:PRK09039 132 SAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIadlgRRLNVALAQR 188
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
798-993 |
6.90e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 798 LTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQEVHNFDKKLEEMsnqvlqwqrqhQS 877
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----------EA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 878 DLKMLAAKESQLREFQEEM-ATLRESLLADEK-EPYSPPAKLTPKETCRHHRENDQIMNNVEQWAKEQKianEKLGNKLR 955
Cdd:COG4942 84 ELAELEKEIAELRAELEAQkEELAELLRALYRlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA---EELRADLA 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 1720428051 956 EQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKK 993
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
663-957 |
7.92e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 663 EEKREQLKKSKEQEKALEEEIEALRQEAKRKEKMAkehlRKLDEEKEN---LQAELTSRSSHLDSSLNKYNSSQKviqel 739
Cdd:PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMA----RELAELNEAesdLEQDYQAASDHLNLVQTALRQQEK----- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 740 naeIARQKDSIMILQTQLDSaiqkekncfQNMVSKEAYEELVRksgnCQDDLTQALEKLTQATSETKSLNRSLQQTQERK 819
Cdd:PRK04863 350 ---IERYQADLEELEERLEE---------QNEVVEEADEQQEE----NEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 820 AQLEDEIAAYeERMKKLN----MELKKLQGFQQQseqevhnFDKKLEEMSNQVLQWQRQhqsdlkmLAAKESQLREFQEE 895
Cdd:PRK04863 414 IQYQQAVQAL-ERAKQLCglpdLTADNAEDWLEE-------FQAKEQEATEELLSLEQK-------LSVAQAAHSQFEQA 478
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720428051 896 MATLREslLADEKEPysPPAKLTPKETCRHHRENDQIMNNVEQW-----AKEQKIANEKLGNKLREQ 957
Cdd:PRK04863 479 YQLVRK--IAGEVSR--SEAWDVARELLRRLREQRHLAEQLQQLrmrlsELEQRLRQQQRAERLLAE 541
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
458-681 |
7.97e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.06 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 458 EKNLMQVQNSLrEKEAELEKLQCTTKELDTSLQEARQSTSKIDCEALRAE---------------IQKLK-------DSL 515
Cdd:pfam05622 159 ERNAEYMQRTL-QLEEELKKANALRGQLETYKRQVQELHGKLSEESKKADklefeykkleekleaLQKEKerliierDTL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 516 EEAREQLK---VSDQNLTQSKEEAHLSASSLEDAHRKI--------------ENCLLQDKQK---EEVIKDLQSQLHKLQ 575
Cdd:pfam05622 238 RETNEELRcaqLQQAELSQADALLSPSSDPGDNLAAEImpaeireklirlqhENKMLRLGQEgsyRERLTELQQLLEDAN 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 576 KESSKIEEERKHNRQRLQELSSELSEGQRRLSNAE---KEKSLLQKTLDEDEKKIDELFHSTQ-----VSEQKQRELTNS 647
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGskaEDSSLLKQKLEEHLEKLHEAQSELQkkkeqIEELEPKQDSNL 397
|
250 260 270
....*....|....*....|....*....|....
gi 1720428051 648 IRKLEEelleikglLEEKreqLKKSKEQEKALEE 681
Cdd:pfam05622 398 AQKIDE--------LQEA---LRKKDEDMKAMEE 420
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
534-834 |
8.03e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.42 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 534 EEAHLSASSLEDAHRKIENCLLQDKQKEEVIKdLQSQLHKLQKESSKIEEERKHNRQRLQELSSE----LSEGQRRLSNA 609
Cdd:TIGR01612 1077 EEAEINITNFNEIKEKLKHYNFDDFGKEENIK-YADEINKIKDDIKNLDQKIDHHIKALEEIKKKsenyIDEIKAQINDL 1155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 610 EK--EKSLLQKTLDEDEKKIDELFhsTQVSEQKQ-----RELTNSIRKLEEE---LLEIKGL------------LEEKRE 667
Cdd:TIGR01612 1156 EDvaDKAISNDDPEEIEKKIENIV--TKIDKKKNiydeiKKLLNEIAEIEKDktsLEEVKGInlsygknlgklfLEKIDE 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 668 QLKKSKEQEKALEEEIEALRQEAKRKEKMAKEHLRKLDEEKE---------NLQAELTSRSSHLDSSLNKYNSSQKVIQE 738
Cdd:TIGR01612 1234 EKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEmetfnishdDDKDHHIISKKHDENISDIREKSLKIIED 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 739 lNAEIARQKDSIMILQTQLDSAiQKEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQATSETKSLNRSLQQTQER 818
Cdd:TIGR01612 1314 -FSEESDINDIKKELQKNLLDA-QKHNSDINLYLNEIANIYNILKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKL 1391
|
330
....*....|....*.
gi 1720428051 819 KAQLEDEIAAYEERMK 834
Cdd:TIGR01612 1392 IKKIKDDINLEECKSK 1407
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
505-905 |
8.93e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 8.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 505 RAEIQKLKDSLEEAREQLkvsdqnlTQSKEEAHLSASSLEDAHRKIEncLLQDKQKEeVIKDLQS---QLHKLQ---KES 578
Cdd:COG3096 277 ANERRELSERALELRREL-------FGARRQLAEEQYRLVEMARELE--ELSARESD-LEQDYQAasdHLNLVQtalRQQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 579 SKIEeerkHNRQRLQELSSELSEGQRRLSNAEKEKSLLQKTLDEDEKKIDELfhSTQVS-------EQKQRELT--NSIR 649
Cdd:COG3096 347 EKIE----RYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSL--KSQLAdyqqaldVQQTRAIQyqQAVQ 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 650 KLEE--ELLEIKGLLEEKREQ-LKKSKEQEKALEEEIEALRQ------EAKRKEKMAKEHLRKLDEEKENLQAELTSRSS 720
Cdd:COG3096 421 ALEKarALCGLPDLTPENAEDyLAAFRAKEQQATEEVLELEQklsvadAARRQFEKAYELVCKIAGEVERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 721 hldssLNKYNSSQKVIQELNAeiarqkdsimiLQTQLDSAiqkEKNCFQNMVSKEAYEELVRKSGNCQDDLTQALEKLTQ 800
Cdd:COG3096 501 -----LRRYRSQQALAQRLQQ-----------LRAQLAEL---EQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 801 ATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQGFQQQSEQevhnfdkkLEEMSNQVLQWQRQHQSDLK 880
Cdd:COG3096 562 LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALER--------LREQSGEALADSQEVTAAMQ 633
|
410 420
....*....|....*....|....*
gi 1720428051 881 MLAAKESQLREFQEEMATLRESLLA 905
Cdd:COG3096 634 QLLEREREATVERDELAARKQALES 658
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
667-765 |
9.19e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720428051 667 EQLKKSKEQEKALEEEIEALRQEakrKEKMAKEHLRKLDEEKENLQAELTSrsshLDSSLNKYNSSQKVIQELNAEIARQ 746
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKE---QDEASFERLAELRDELAELEEELEA----LKARWEAEKELIEEIQELKEELEQR 483
|
90
....*....|....*....
gi 1720428051 747 KDSIMILQTQLDSAIQKEK 765
Cdd:COG0542 484 YGKIPELEKELAELEEELA 502
|
|
| |
