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Conserved domains on  [gi|1720435199|ref|XP_030107214|]
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integrin beta-1-binding protein 2 isoform X1 [Mus musculus]

Protein Classification

cysteine and histidine-rich domain-containing protein( domain architecture ID 10523071)

cysteine and histidine-rich domain (CHORD)-containing protein is a zinc-binding protein

Gene Ontology:  GO:0008270

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CHORD pfam04968
CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene ...
3-64 1.04e-35

CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development.


:

Pssm-ID: 461502  Cd Length: 62  Bit Score: 122.63  E-value: 1.04e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435199   3 LLCYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTVGLH 64
Cdd:pfam04968   1 TKCKNKGCGKTFDEEENNDDACTYHPGAPIFHEGSKGWSCCKKRVLDFDEFLKIPGCTTGKH 62
CHORD pfam04968
CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene ...
149-209 8.05e-30

CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development.


:

Pssm-ID: 461502  Cd Length: 62  Bit Score: 107.22  E-value: 8.05e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435199 149 SCQNPGCDAVYQGPESDATPCTYHPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRH 209
Cdd:pfam04968   2 KCKNKGCGKTFDEEENNDDACTYHPGAPIFHEGSKGWSCCKKRVLDFDEFLKIPGCTTGKH 62
alpha-crystallin-Hsps_p23-like super family cl00175
alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a ...
219-252 1.03e-13

alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.; The alpha-crystallin-Hsps_p23-like superfamily includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12-43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this superfamily is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR).


The actual alignment was detected with superfamily member cd06488:

Pssm-ID: 469641  Cd Length: 87  Bit Score: 65.40  E-value: 1.03e-13
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1720435199 219 CRHDWHQTDSVVVLTVYGQIPLPAFNWVKASQTE 252
Cdd:cd06488     1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTV 34
 
Name Accession Description Interval E-value
CHORD pfam04968
CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene ...
3-64 1.04e-35

CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development.


Pssm-ID: 461502  Cd Length: 62  Bit Score: 122.63  E-value: 1.04e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435199   3 LLCYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTVGLH 64
Cdd:pfam04968   1 TKCKNKGCGKTFDEEENNDDACTYHPGAPIFHEGSKGWSCCKKRVLDFDEFLKIPGCTTGKH 62
CHORD pfam04968
CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene ...
149-209 8.05e-30

CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development.


Pssm-ID: 461502  Cd Length: 62  Bit Score: 107.22  E-value: 8.05e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435199 149 SCQNPGCDAVYQGPESDATPCTYHPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRH 209
Cdd:pfam04968   2 KCKNKGCGKTFDEEENNDDACTYHPGAPIFHEGSKGWSCCKKRVLDFDEFLKIPGCTTGKH 62
p23_melusin_like cd06488
p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related ...
219-252 1.03e-13

p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains.


Pssm-ID: 107238  Cd Length: 87  Bit Score: 65.40  E-value: 1.03e-13
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1720435199 219 CRHDWHQTDSVVVLTVYGQIPLPAFNWVKASQTE 252
Cdd:cd06488     1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTV 34
 
Name Accession Description Interval E-value
CHORD pfam04968
CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene ...
3-64 1.04e-35

CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development.


Pssm-ID: 461502  Cd Length: 62  Bit Score: 122.63  E-value: 1.04e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720435199   3 LLCYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTVGLH 64
Cdd:pfam04968   1 TKCKNKGCGKTFDEEENNDDACTYHPGAPIFHEGSKGWSCCKKRVLDFDEFLKIPGCTTGKH 62
CHORD pfam04968
CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene ...
149-209 8.05e-30

CHORD; CHORD represents a Zn binding domain. Silencing of the C. elegans CHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development.


Pssm-ID: 461502  Cd Length: 62  Bit Score: 107.22  E-value: 8.05e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720435199 149 SCQNPGCDAVYQGPESDATPCTYHPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRH 209
Cdd:pfam04968   2 KCKNKGCGKTFDEEENNDDACTYHPGAPIFHEGSKGWSCCKKRVLDFDEFLKIPGCTTGKH 62
p23_melusin_like cd06488
p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related ...
219-252 1.03e-13

p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains.


Pssm-ID: 107238  Cd Length: 87  Bit Score: 65.40  E-value: 1.03e-13
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1720435199 219 CRHDWHQTDSVVVLTVYGQIPLPAFNWVKASQTE 252
Cdd:cd06488     1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTV 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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