|
Name |
Accession |
Description |
Interval |
E-value |
| SM-ATX |
pfam14438 |
Ataxin 2 SM domain; This SM domain is found in Ataxin-2. |
53-126 |
1.95e-21 |
|
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
:
Pssm-ID: 464173 Cd Length: 78 Bit Score: 89.15 E-value: 1.95e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1785338352 53 LVHILTSVVGSKCEVFVKNGSIYEGVFKTYSP--KCDLVLDAAHKKTTESIVG--PKREDIVDSILFKSSDFVMVQFK 126
Cdd:pfam14438 1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
|
|
| LsmAD |
pfam06741 |
LsmAD domain; This domain is found associated with Lsm domain. |
200-261 |
6.18e-16 |
|
LsmAD domain; This domain is found associated with Lsm domain.
:
Pssm-ID: 461998 [Multi-domain] Cd Length: 65 Bit Score: 72.99 E-value: 6.18e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1785338352 200 YGVVSTYDSSLssYTVPLERdNSEEYLKREARAAQIAEEIESSSQYKARVALEN------DERSEEEK 261
Cdd:pfam06741 1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvddSGLDEEDK 65
|
|
| PAT1 super family |
cl37801 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
824-1080 |
1.18e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
The actual alignment was detected with superfamily member pfam09770:
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 52.73 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 824 YSAQYVAYSPQQFPNQPLMQHVQHYQ---SQHPHVYSPVIQGNTRMMAPPS----HAQAGLVSSSAAQYATPEQTHTmyv 896
Cdd:pfam09770 102 FNRQQPAARAAQSSAQPPASSLPQYQyasQQSQQPSKPVRTGYEKYKEPEPipdlQVDASLWGVAPKKAAAPAPAPQ--- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 897 sTSSLAQQYAHPN----------AALHPHpphpqpsATPTGQQQSQHGGSHPAPSPVQHHQHQASQALHLANQQQQSAIY 966
Cdd:pfam09770 179 -PAAQPASLPAPSrkmmsleeveAAMRAQ-------AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQP 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 967 HAGLAPTPPAMtPGSNAQSPQSSfPTQQTVFTIHPSHVQAAYTNPPHMAHVQQAHVQSGMVPSHPTAHPMMLMTAQPPGG 1046
Cdd:pfam09770 251 QQPQQHPGQGH-PVTILQRPQSP-QPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAP 328
|
250 260 270
....*....|....*....|....*....|....
gi 1785338352 1047 PQAALAQSALQPIPvstahfsymthPPVQAHHQQ 1080
Cdd:pfam09770 329 AHQAHRQQGSFGRQ-----------APIITHPQQ 351
|
|
| PAT1 super family |
cl37801 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
717-908 |
1.17e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
The actual alignment was detected with superfamily member pfam09770:
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 46.18 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 717 AQPKPSTTPTSPRPQTQPSPSVVGHQ--------------QPTPVYTQPvcfaPNMMYPVPVSPGVQPLYSIPMTTMPVN 782
Cdd:pfam09770 166 APKKAAAPAPAPQPAAQPASLPAPSRkmmsleeveaamraQAKKPAQQP----APAPAQPPAAPPAQQAQQQQQFPPQIQ 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 783 QAKTYRAVPNMPQQRQDQHHQNTMM-HPVSAAGPPIVATPPAysaqyvaySPQQFPNQPLMQHVQHYQS-QHPHVYSPVI 860
Cdd:pfam09770 242 QQQQPQQQPQQPQQHPGQGHPVTILqRPQSPQPDPAQPSIQP--------QAQQFHQQPPPVPVQPTQIlQNPNRLSAAR 313
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1785338352 861 QGNTRMMAPPSHAQAglvsssaaqyatPEQTHTMYVSTSSLAQQYAHP 908
Cdd:pfam09770 314 VGYPQNPQPGVQPAP------------AHQAHRQQGSFGRQAPIITHP 349
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
364-833 |
2.12e-04 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 364 PNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPV-STMPK--RMSSEGPPRMSPKAQRHPRTHRVS------NGRG 434
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPqSARPRapVDDRGDPRGPAPPSPLPPDTHAPDppppspSPAA 2635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 435 TICGGLEFVSRNEPGEVSAQPVARNSSSGGTWSSVVSGVQRLSPkTHRPRSPRL-GSHAPGSNVSSPQPSTVPPESVSMP 513
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAArPTVGSLTSLADPPPPPPTPEPAPHA 2714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 514 VPAASPTPASPASNRAVTPSCEAKDSrlqdQRQNSPAACRENSKQSESSCSKTENKVSPMASEQRKQLDdlkkfkndfrl 593
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPA----PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP----------- 2779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 594 QPSSSPEALDHLTIkNRDSVEKPRDPVKEKVDANNKESTSESSSNATTSNNSSKPSSPSISPSIISSGSEhkrgPEVTSQ 673
Cdd:PHA03247 2780 PRRLTRPAVASLSE-SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP----SLPLGG 2854
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 674 GVQTSGP-SKQDRDDKDDRKENAAEQVRKSTLNPNAKEFNPRSYAQPkpsttPTSPRPQTQPSPsvvghqqPTPVYTQPV 752
Cdd:PHA03247 2855 SVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP-----PDQPERPPQPQA-------PPPPQPQPQ 2922
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 753 CFAPNMMYPVPVSPGvQPLYSIPMTTMPVNQAKTYRAVPNmpqqrqdqhHQNTMMHPVSAAGPPIVATPPAYSAQYVAYS 832
Cdd:PHA03247 2923 PPPPPQPQPPPPPPP-RPQPPLAPTTDPAGAGEPSGAVPQ---------PWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
|
.
gi 1785338352 833 P 833
Cdd:PHA03247 2993 T 2993
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SM-ATX |
pfam14438 |
Ataxin 2 SM domain; This SM domain is found in Ataxin-2. |
53-126 |
1.95e-21 |
|
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
Pssm-ID: 464173 Cd Length: 78 Bit Score: 89.15 E-value: 1.95e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1785338352 53 LVHILTSVVGSKCEVFVKNGSIYEGVFKTYSP--KCDLVLDAAHKKTTESIVG--PKREDIVDSILFKSSDFVMVQFK 126
Cdd:pfam14438 1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
|
|
| LsmAD |
pfam06741 |
LsmAD domain; This domain is found associated with Lsm domain. |
200-261 |
6.18e-16 |
|
LsmAD domain; This domain is found associated with Lsm domain.
Pssm-ID: 461998 [Multi-domain] Cd Length: 65 Bit Score: 72.99 E-value: 6.18e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1785338352 200 YGVVSTYDSSLssYTVPLERdNSEEYLKREARAAQIAEEIESSSQYKARVALEN------DERSEEEK 261
Cdd:pfam06741 1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvddSGLDEEDK 65
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
824-1080 |
1.18e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 52.73 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 824 YSAQYVAYSPQQFPNQPLMQHVQHYQ---SQHPHVYSPVIQGNTRMMAPPS----HAQAGLVSSSAAQYATPEQTHTmyv 896
Cdd:pfam09770 102 FNRQQPAARAAQSSAQPPASSLPQYQyasQQSQQPSKPVRTGYEKYKEPEPipdlQVDASLWGVAPKKAAAPAPAPQ--- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 897 sTSSLAQQYAHPN----------AALHPHpphpqpsATPTGQQQSQHGGSHPAPSPVQHHQHQASQALHLANQQQQSAIY 966
Cdd:pfam09770 179 -PAAQPASLPAPSrkmmsleeveAAMRAQ-------AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQP 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 967 HAGLAPTPPAMtPGSNAQSPQSSfPTQQTVFTIHPSHVQAAYTNPPHMAHVQQAHVQSGMVPSHPTAHPMMLMTAQPPGG 1046
Cdd:pfam09770 251 QQPQQHPGQGH-PVTILQRPQSP-QPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAP 328
|
250 260 270
....*....|....*....|....*....|....
gi 1785338352 1047 PQAALAQSALQPIPvstahfsymthPPVQAHHQQ 1080
Cdd:pfam09770 329 AHQAHRQQGSFGRQ-----------APIITHPQQ 351
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
717-908 |
1.17e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 46.18 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 717 AQPKPSTTPTSPRPQTQPSPSVVGHQ--------------QPTPVYTQPvcfaPNMMYPVPVSPGVQPLYSIPMTTMPVN 782
Cdd:pfam09770 166 APKKAAAPAPAPQPAAQPASLPAPSRkmmsleeveaamraQAKKPAQQP----APAPAQPPAAPPAQQAQQQQQFPPQIQ 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 783 QAKTYRAVPNMPQQRQDQHHQNTMM-HPVSAAGPPIVATPPAysaqyvaySPQQFPNQPLMQHVQHYQS-QHPHVYSPVI 860
Cdd:pfam09770 242 QQQQPQQQPQQPQQHPGQGHPVTILqRPQSPQPDPAQPSIQP--------QAQQFHQQPPPVPVQPTQIlQNPNRLSAAR 313
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1785338352 861 QGNTRMMAPPSHAQAglvsssaaqyatPEQTHTMYVSTSSLAQQYAHP 908
Cdd:pfam09770 314 VGYPQNPQPGVQPAP------------AHQAHRQQGSFGRQAPIITHP 349
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
364-833 |
2.12e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 364 PNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPV-STMPK--RMSSEGPPRMSPKAQRHPRTHRVS------NGRG 434
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPqSARPRapVDDRGDPRGPAPPSPLPPDTHAPDppppspSPAA 2635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 435 TICGGLEFVSRNEPGEVSAQPVARNSSSGGTWSSVVSGVQRLSPkTHRPRSPRL-GSHAPGSNVSSPQPSTVPPESVSMP 513
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAArPTVGSLTSLADPPPPPPTPEPAPHA 2714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 514 VPAASPTPASPASNRAVTPSCEAKDSrlqdQRQNSPAACRENSKQSESSCSKTENKVSPMASEQRKQLDdlkkfkndfrl 593
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPA----PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP----------- 2779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 594 QPSSSPEALDHLTIkNRDSVEKPRDPVKEKVDANNKESTSESSSNATTSNNSSKPSSPSISPSIISSGSEhkrgPEVTSQ 673
Cdd:PHA03247 2780 PRRLTRPAVASLSE-SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP----SLPLGG 2854
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 674 GVQTSGP-SKQDRDDKDDRKENAAEQVRKSTLNPNAKEFNPRSYAQPkpsttPTSPRPQTQPSPsvvghqqPTPVYTQPV 752
Cdd:PHA03247 2855 SVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP-----PDQPERPPQPQA-------PPPPQPQPQ 2922
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 753 CFAPNMMYPVPVSPGvQPLYSIPMTTMPVNQAKTYRAVPNmpqqrqdqhHQNTMMHPVSAAGPPIVATPPAYSAQYVAYS 832
Cdd:PHA03247 2923 PPPPPQPQPPPPPPP-RPQPPLAPTTDPAGAGEPSGAVPQ---------PWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
|
.
gi 1785338352 833 P 833
Cdd:PHA03247 2993 T 2993
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
702-942 |
2.16e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.44 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 702 STLNPNAKEFNPRSYAQPKPSTTPTSPRPQTQPSPSVVGHQQPTPVytQPVCFAPNMMYPVPVSPGVQPLYSIPMTTMPV 781
Cdd:PHA03378 583 SQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPL--RPIPMRPLRMQPITFNVLVFPTPHQPPQVEIT 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 782 NQAKTYRAVPNMPQQRQDQHHqNTMMHPvsAAGPPIVATPPAysaqyvAYSPQQFPNQPlmqhvqhyqsqhPHVYSPVIQ 861
Cdd:PHA03378 661 PYKPTWTQIGHIPYQPSPTGA-NTMLPI--QWAPGTMQPPPR------APTPMRPPAAP------------PGRAQRPAA 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 862 GNTRMMAPPSHAQAGLVSSSAAQYATPEQTHTMYVSTSSLAQQYAHPNAALHPHPPHPQPSATPTGQQQSQHGGSHPAPS 941
Cdd:PHA03378 720 ATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPP 799
|
.
gi 1785338352 942 P 942
Cdd:PHA03378 800 P 800
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
700-856 |
1.28e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.87 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 700 RKSTLNPNAKEFNPRSYAQPKPSttptsPRPQTQPSPSVVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLysiPMTTM 779
Cdd:TIGR01628 367 RRAHLQDQFMQLQPRMRQLPMGS-----PMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR---PNGLA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 780 PVNQAktyRAVPNMPQQRQDQHHQNTMMHPVSAAGPPIVATPPAYSAQYVAYSPQQFPNQPLMQHVQHYQSQ------HP 853
Cdd:TIGR01628 439 PMNAV---RAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQvlgerlFP 515
|
...
gi 1785338352 854 HVY 856
Cdd:TIGR01628 516 LVE 518
|
|
| PAM2 |
pfam07145 |
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ... |
700-716 |
2.41e-03 |
|
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.
Pssm-ID: 429316 Cd Length: 17 Bit Score: 36.05 E-value: 2.41e-03
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
736-950 |
2.43e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 736 PSVVGHQQPTPVYTQPVCFAPNMMYPVPVSPgvqplysiPMTTMPVNQAKTYRAVPNMPQQRQdqhhqntmmhPVSAAGP 815
Cdd:PRK10263 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEP--------VTQTPPVASVDVPPAQPTVAWQPV----------PGPQTGE 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 816 PIVATPPAysaqyvAYSPQQFPNQPLMQHVQHYQSQHPHvyspviqgntrmmAPPSHAQAGLVSSSAAQYATPEQTHTMY 895
Cdd:PRK10263 371 PVIAPAPE------GYPQQSQYAQPAVQYNEPLQQPVQP-------------QQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1785338352 896 vstSSLAQQYAHPNAALHPHPPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQA 950
Cdd:PRK10263 432 ---PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SM-ATX |
pfam14438 |
Ataxin 2 SM domain; This SM domain is found in Ataxin-2. |
53-126 |
1.95e-21 |
|
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
Pssm-ID: 464173 Cd Length: 78 Bit Score: 89.15 E-value: 1.95e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1785338352 53 LVHILTSVVGSKCEVFVKNGSIYEGVFKTYSP--KCDLVLDAAHKKTTESIVG--PKREDIVDSILFKSSDFVMVQFK 126
Cdd:pfam14438 1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
|
|
| LsmAD |
pfam06741 |
LsmAD domain; This domain is found associated with Lsm domain. |
200-261 |
6.18e-16 |
|
LsmAD domain; This domain is found associated with Lsm domain.
Pssm-ID: 461998 [Multi-domain] Cd Length: 65 Bit Score: 72.99 E-value: 6.18e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1785338352 200 YGVVSTYDSSLssYTVPLERdNSEEYLKREARAAQIAEEIESSSQYKARVALEN------DERSEEEK 261
Cdd:pfam06741 1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvddSGLDEEDK 65
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
824-1080 |
1.18e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 52.73 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 824 YSAQYVAYSPQQFPNQPLMQHVQHYQ---SQHPHVYSPVIQGNTRMMAPPS----HAQAGLVSSSAAQYATPEQTHTmyv 896
Cdd:pfam09770 102 FNRQQPAARAAQSSAQPPASSLPQYQyasQQSQQPSKPVRTGYEKYKEPEPipdlQVDASLWGVAPKKAAAPAPAPQ--- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 897 sTSSLAQQYAHPN----------AALHPHpphpqpsATPTGQQQSQHGGSHPAPSPVQHHQHQASQALHLANQQQQSAIY 966
Cdd:pfam09770 179 -PAAQPASLPAPSrkmmsleeveAAMRAQ-------AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQP 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 967 HAGLAPTPPAMtPGSNAQSPQSSfPTQQTVFTIHPSHVQAAYTNPPHMAHVQQAHVQSGMVPSHPTAHPMMLMTAQPPGG 1046
Cdd:pfam09770 251 QQPQQHPGQGH-PVTILQRPQSP-QPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAP 328
|
250 260 270
....*....|....*....|....*....|....
gi 1785338352 1047 PQAALAQSALQPIPvstahfsymthPPVQAHHQQ 1080
Cdd:pfam09770 329 AHQAHRQQGSFGRQ-----------APIITHPQQ 351
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
717-908 |
1.17e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 46.18 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 717 AQPKPSTTPTSPRPQTQPSPSVVGHQ--------------QPTPVYTQPvcfaPNMMYPVPVSPGVQPLYSIPMTTMPVN 782
Cdd:pfam09770 166 APKKAAAPAPAPQPAAQPASLPAPSRkmmsleeveaamraQAKKPAQQP----APAPAQPPAAPPAQQAQQQQQFPPQIQ 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 783 QAKTYRAVPNMPQQRQDQHHQNTMM-HPVSAAGPPIVATPPAysaqyvaySPQQFPNQPLMQHVQHYQS-QHPHVYSPVI 860
Cdd:pfam09770 242 QQQQPQQQPQQPQQHPGQGHPVTILqRPQSPQPDPAQPSIQP--------QAQQFHQQPPPVPVQPTQIlQNPNRLSAAR 313
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1785338352 861 QGNTRMMAPPSHAQAglvsssaaqyatPEQTHTMYVSTSSLAQQYAHP 908
Cdd:pfam09770 314 VGYPQNPQPGVQPAP------------AHQAHRQQGSFGRQAPIITHP 349
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
364-833 |
2.12e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 364 PNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPV-STMPK--RMSSEGPPRMSPKAQRHPRTHRVS------NGRG 434
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPqSARPRapVDDRGDPRGPAPPSPLPPDTHAPDppppspSPAA 2635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 435 TICGGLEFVSRNEPGEVSAQPVARNSSSGGTWSSVVSGVQRLSPkTHRPRSPRL-GSHAPGSNVSSPQPSTVPPESVSMP 513
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAArPTVGSLTSLADPPPPPPTPEPAPHA 2714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 514 VPAASPTPASPASNRAVTPSCEAKDSrlqdQRQNSPAACRENSKQSESSCSKTENKVSPMASEQRKQLDdlkkfkndfrl 593
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPA----PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP----------- 2779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 594 QPSSSPEALDHLTIkNRDSVEKPRDPVKEKVDANNKESTSESSSNATTSNNSSKPSSPSISPSIISSGSEhkrgPEVTSQ 673
Cdd:PHA03247 2780 PRRLTRPAVASLSE-SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP----SLPLGG 2854
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 674 GVQTSGP-SKQDRDDKDDRKENAAEQVRKSTLNPNAKEFNPRSYAQPkpsttPTSPRPQTQPSPsvvghqqPTPVYTQPV 752
Cdd:PHA03247 2855 SVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP-----PDQPERPPQPQA-------PPPPQPQPQ 2922
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 753 CFAPNMMYPVPVSPGvQPLYSIPMTTMPVNQAKTYRAVPNmpqqrqdqhHQNTMMHPVSAAGPPIVATPPAYSAQYVAYS 832
Cdd:PHA03247 2923 PPPPPQPQPPPPPPP-RPQPPLAPTTDPAGAGEPSGAVPQ---------PWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
|
.
gi 1785338352 833 P 833
Cdd:PHA03247 2993 T 2993
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
702-942 |
2.16e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.44 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 702 STLNPNAKEFNPRSYAQPKPSTTPTSPRPQTQPSPSVVGHQQPTPVytQPVCFAPNMMYPVPVSPGVQPLYSIPMTTMPV 781
Cdd:PHA03378 583 SQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPL--RPIPMRPLRMQPITFNVLVFPTPHQPPQVEIT 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 782 NQAKTYRAVPNMPQQRQDQHHqNTMMHPvsAAGPPIVATPPAysaqyvAYSPQQFPNQPlmqhvqhyqsqhPHVYSPVIQ 861
Cdd:PHA03378 661 PYKPTWTQIGHIPYQPSPTGA-NTMLPI--QWAPGTMQPPPR------APTPMRPPAAP------------PGRAQRPAA 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 862 GNTRMMAPPSHAQAGLVSSSAAQYATPEQTHTMYVSTSSLAQQYAHPNAALHPHPPHPQPSATPTGQQQSQHGGSHPAPS 941
Cdd:PHA03378 720 ATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPP 799
|
.
gi 1785338352 942 P 942
Cdd:PHA03378 800 P 800
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
478-906 |
5.54e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 478 PKTHRPRSPRlgsHAPGSNVSSPQPSTVPPESvsmpvPAASPTPASPASNRAVTPSCEAKDSRLQDQRQNSPAACRENSK 557
Cdd:PHA03247 2593 PQSARPRAPV---DDRGDPRGPAPPSPLPPDT-----HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 558 QSESSCSKTENKVSPMASEQRKQLDDLKKFKNDFR--LQPSSSPEALDHLTIKNRDSVEKPRDPVKEKVDANNKESTSES 635
Cdd:PHA03247 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAdpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 636 SSNATTSNNSSKPSSPSISPSIISSGSEHKRG----PEVTSQGVQTSGPSKQDRDDKDDRKEN-AAEQVRKSTLNPNAKe 710
Cdd:PHA03247 2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAagppRRLTRPAVASLSESRESLPSPWDPADPpAAVLAPAAALPPAAS- 2823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 711 fnPRSYAQPKPSTTPTSPRPQTQPSPSVV---GHQQP-TPVYTQPVCFAPNmmyPVPVSPGVQPLYSIPMTtmPVNQAKT 786
Cdd:PHA03247 2824 --PAGPLPPPTSAQPTAPPPPPGPPPPSLplgGSVAPgGDVRRRPPSRSPA---AKPAAPARPPVRRLARP--AVSRSTE 2896
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 787 YRAVPNMPQQRQDQhhqntmmhPVSAAGPPIVATPPAYSAQYVAYSPQQFPNQPLMQHVQHYQSQHPHVYSPVIQGNT-- 864
Cdd:PHA03247 2897 SFALPPDQPERPPQ--------PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAlv 2968
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1785338352 865 --RMMAPPSHAQAGLVSSSAAQYATPEQTHTMYVSTSSLAQQYA 906
Cdd:PHA03247 2969 pgRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
450-591 |
5.65e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 44.00 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 450 EVSAQPVARNSSSGGTWSSVVSGVQRLSPKTHRPRSPRL------GSHAPGSNVSSPQPSTVP--------PESVSMPVP 515
Cdd:PRK14971 353 ELTLIQLAQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQpsaaaaASPSPSQSSAAAQPSAPQsatqpagtPPTVSVDPP 432
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1785338352 516 AASPTPASPASNRAVTPSCEAKDSRLQDQRQNSPAACRENSKQSESSCSKTENKVSPMASEQRK-QLDDLKKFKNDF 591
Cdd:PRK14971 433 AAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKEIfTEEDLQYYWQEF 509
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
714-858 |
9.50e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.54 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 714 RSYAQPKPSTTPTSPRPQTQPSPS--------VVGHQQPTPVYT-QPVCFAPNMMYPVPVSPGVQPLYSiPMTTMPVNQA 784
Cdd:PRK10263 331 QSWAAPVEPVTQTPPVASVDVPPAqptvawqpVPGPQTGEPVIApAPEGYPQQSQYAQPAVQYNEPLQQ-PVQPQQPYYA 409
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1785338352 785 KTYRAVPNMPQQRQDQHHQNTMMHPVSAAGPPIVATPPAYSAQYVAYSPQ--QFPNQPLMQHV-QHYQSQHPHVYSP 858
Cdd:PRK10263 410 PAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQstYQTEQTYQQPAaQEPLYQQPQPVEQ 486
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
700-856 |
1.28e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.87 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 700 RKSTLNPNAKEFNPRSYAQPKPSttptsPRPQTQPSPSVVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLysiPMTTM 779
Cdd:TIGR01628 367 RRAHLQDQFMQLQPRMRQLPMGS-----PMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLR---PNGLA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 780 PVNQAktyRAVPNMPQQRQDQHHQNTMMHPVSAAGPPIVATPPAYSAQYVAYSPQQFPNQPLMQHVQHYQSQ------HP 853
Cdd:TIGR01628 439 PMNAV---RAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQvlgerlFP 515
|
...
gi 1785338352 854 HVY 856
Cdd:TIGR01628 516 LVE 518
|
|
| PAM2 |
pfam07145 |
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ... |
700-716 |
2.41e-03 |
|
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.
Pssm-ID: 429316 Cd Length: 17 Bit Score: 36.05 E-value: 2.41e-03
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
736-950 |
2.43e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 736 PSVVGHQQPTPVYTQPVCFAPNMMYPVPVSPgvqplysiPMTTMPVNQAKTYRAVPNMPQQRQdqhhqntmmhPVSAAGP 815
Cdd:PRK10263 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEP--------VTQTPPVASVDVPPAQPTVAWQPV----------PGPQTGE 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1785338352 816 PIVATPPAysaqyvAYSPQQFPNQPLMQHVQHYQSQHPHvyspviqgntrmmAPPSHAQAGLVSSSAAQYATPEQTHTMY 895
Cdd:PRK10263 371 PVIAPAPE------GYPQQSQYAQPAVQYNEPLQQPVQP-------------QQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1785338352 896 vstSSLAQQYAHPNAALHPHPPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQA 950
Cdd:PRK10263 432 ---PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483
|
|
| |
