|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
5.11e-31 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 116.60 E-value: 5.11e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 13 LDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTgtgLMGRKNRNLYAKLLLHMLKRGVLEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 1796484850 93 KTLPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
412-883 |
4.67e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 412 ELESRVQQLTGEAENSnLQRQKLIQEKLELERIYQItcNELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKyDADINLL 491
Cdd:COG1196 197 ELERQLEPLERQAEKA-ERYRELKEELKELEAELLL--LKLRELEAELEELEAELEELEAELEELEAELAEL-EAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 492 KKEHAlssskasgmikELEQNIcqlkQQLQESELQRKKQLRDQENKFQMEKSHLKRTCEKKIhdlesELGKEKEETQKKI 571
Cdd:COG1196 273 RLELE-----------ELELEL----EEAQAEEYELLAELARLEQDIARLEERRRELEERLE-----ELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 572 HKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVyaemKEQMEKVETDLTRSKSLREKQSKEFswQLE 651
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE----EELEELAEELLEALRAAAELAAQLE--ELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 652 EVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQ 729
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEeaLEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 730 VHKLREELIHVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKE 809
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1796484850 810 YTQKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAIKALQEELENRSNQVR 883
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
307-876 |
1.15e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 307 EMEETIRKLEKKVQIL-IRDCQVIRETKENQITELKKICEQSTESLNndwekKLHNAVAEMEKEKFDLQKRHTENIQELL 385
Cdd:COG1196 217 ELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELA-----ELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 386 EdTNMRLNKMEGeymaQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKE 465
Cdd:COG1196 292 E-LLAELARLEQ----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 466 KDHLTNDYEQNMKLFQTKYDADINLLKKEhalssskasgmiKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHL 545
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAA------------AELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 546 KRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQM 625
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 626 EKVETD-LTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNA--------EKDSLVRDHEREIEN 696
Cdd:COG1196 515 LLAGLRgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 697 LEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAE 776
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 777 SEKmkmelKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAER-RLQDVIQKFED 855
Cdd:COG1196 675 LEA-----EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELlEELLEEEELLE 749
|
570 580
....*....|....*....|.
gi 1796484850 856 EKKQLIRDNDQAIKALQEELE 876
Cdd:COG1196 750 EEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
585-933 |
1.79e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 585 LTRVTEVQRLQAQQadaaLEEFKRQVElNSEKvYAEMKEQMEKVETDLtRSKSLREKQSkefswQLEEVRqryeQQIVEL 664
Cdd:COG1196 188 LERLEDILGELERQ----LEPLERQAE-KAER-YRELKEELKELEAEL-LLLKLRELEA-----ELEELE----AELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 665 KLEHEQEKTHLlqqhnaekdslvRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQvIADMEAQVHKLREELIHVNSQR 744
Cdd:COG1196 252 EAELEELEAEL------------AELEAELEELRLELEELELELEEAQAEEYELLAE-LARLEQDIARLEERRRELEERL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 745 KQQLVELGLLREEEKQKAARDHEtvvykLKAESEKMKMELkrthaAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAEL 824
Cdd:COG1196 319 EELEEELAELEEELEELEEELEE-----LEEELEEAEEEL-----EEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 825 QTTISSLKEENSRLQlAAERRLQDVIQKFEDEKKQLIRDNDQAIKALQEELENRSNQVRCAEKKLQHKELESQEQITYIR 904
Cdd:COG1196 389 LEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340
....*....|....*....|....*....
gi 1796484850 905 QEYETKFKGLMPASLRQELEDTISSLKSQ 933
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
506-873 |
3.08e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 506 IKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLKRTCEK--KIHDLESELGKEKEETQkkihkleealkekee 583
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELsrQISALRKDLARLEAEVE--------------- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 584 QLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVyAEMKEQMEKVETDLTRSKSLREKQskefswqleevrqryEQQIVE 663
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKAL---------------REALDE 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 664 LKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAANMEHENQIQEfkkrdsqvIADMEAQVHKLREELIHVN 741
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLErrIAATERRLEDLEEQIEELSEDIESLAAE--------IEELEELIEELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 742 SQRKQQLVELGLLRE--EEKQKAARDHETVVYKLKAEsekmkMELKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQ 819
Cdd:TIGR02168 880 NERASLEEALALLRSelEELSEELRELESKRSELRRE-----LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1796484850 820 II-----------AELQTTISSLKEENSRL---QLAAERRLQDVIQKFEDEKKQlIRDNDQAIKALQE 873
Cdd:TIGR02168 955 EAealenkieddeEEARRRLKRLENKIKELgpvNLAAIEEYEELKERYDFLTAQ-KEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
564-925 |
1.27e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 564 KEETQKKIHKLEEalkekeeQLTRVTEVqrlqaqqadaaLEEFKRQV---ELNSEKV--YAEMKEQMEKVETDL--TRSK 636
Cdd:TIGR02168 174 RKETERKLERTRE-------NLDRLEDI-----------LNELERQLkslERQAEKAerYKELKAELRELELALlvLRLE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 637 SLREKQSkefswQLEEVRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEH---ENQIQ 713
Cdd:TIGR02168 236 ELREELE-----ELQEELKEAEEELEELTAE-LQELEEKLEELRLEVSEL----EEEIEELQKELYALANEIsrlEQQKQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 714 EFKKRDSQViadmEAQVHKLREELIHVNSQRKQQLVELGLLrEEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETE 793
Cdd:TIGR02168 306 ILRERLANL----ERQLEELEAQLEELESKLDELAEELAEL-EEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 794 vtLEKANSRLKQIEkeytQKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAIKALQE 873
Cdd:TIGR02168 381 --LETLRSKVAQLE----LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1796484850 874 ELENRSNQVRCAEKKLQHKElesQEQITYIRQEYETKFKGLMPASLRQELED 925
Cdd:TIGR02168 455 ELERLEEALEELREELEEAE---QALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-934 |
3.83e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 234 KFSLRKSSSLHEDpLRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELK---ILYKKKQNEMEE 310
Cdd:TIGR02168 245 QEELKEAEEELEE-LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRerlANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 311 TIRKLEKKVQILIRD----------CQVIRETKENQITELKKICEQStESLNNDWEKKLHN---AVAEMEKEKFDLQKRh 377
Cdd:TIGR02168 324 QLEELESKLDELAEElaeleekleeLKEELESLEAELEELEAELEEL-ESRLEELEEQLETlrsKVAQLELQIASLNNE- 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 378 TENIQELLEDTNMRLNKMEGEYMAQTQS-TNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVK 456
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 457 ARRNSLHKEKDHLTNDYEQnmklFQTKYDADINLLKKEHALSS---------SKASGMIKELE-------QNIC--QLKQ 518
Cdd:TIGR02168 482 RELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGilgvlseliSVDEGYEAAIEaalggrlQAVVveNLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 519 QLQESELQRKKQLR-------DQENKFQMEKSHLKRtceKKIHDLESELGKEKEETQKKIHKLEEALkekeeqLTRVTEV 591
Cdd:TIGR02168 558 AKKAIAFLKQNELGrvtflplDSIKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLRKALSYL------LGGVLVV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 592 QRLQAQQADAALEEFK-RQVELNSEKVYA----------------EMKEQMEKVETDLTRSKSLREKQSKEFSwQLEEVR 654
Cdd:TIGR02168 629 DDLDNALELAKKLRPGyRIVTLDGDLVRPggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALA-ELRKEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 655 QRYEQQIVELKLEHEQekthLLQQHNAEKDSLVRdHEREIENLEKQLRAANMEHENQIQEFKKRDSQvIADMEAQVHKLR 734
Cdd:TIGR02168 708 EELEEELEQLRKELEE----LSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 735 EELIHVNSQRKQQLVELGLLREE--EKQKAARDHETvvyKLKAESEKMKMELKRTHAAETEVT-LEKANSRLKQIEKEYT 811
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREAldELRAELTLLNE---EAANLRERLESLERRIAATERRLEdLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 812 QKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDekkqlIRDNDQAIKALQEELENRSNQVRCAEKKLQH 891
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE-----LRELESKRSELRRELEELREKLAQLELRLEG 933
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 1796484850 892 KELESQEQITYIRQEYETKFKGLMP-----ASLRQELEDTISSLKSQV 934
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKI 981
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
379-947 |
6.90e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 6.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 379 ENIQELLEDTNMRLNKMEgEYMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQitcnELQEVKAR 458
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 459 RNSLHKEKDHLtndyEQNMKlfqtKYDADINLLKKEHALSSSKasgmIKELEQNICQLKQQLQESELQRK-----KQLRD 533
Cdd:PRK03918 240 IEELEKELESL----EGSKR----KLEEKIRELEERIEELKKE----IEELEEKVKELKELKEKAEEYIKlsefyEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 534 QENKFQMEKSHLK---RTCEKKIHDLES------ELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALE 604
Cdd:PRK03918 308 ELREIEKRLSRLEeeiNGIEERIKELEEkeerleELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 605 EFKRQVELNSEKvyaemKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKD 684
Cdd:PRK03918 388 KLEKELEELEKA-----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 685 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQviadmeaqvHKLREELIHVNSqrkqqlvELGLLREEEKQKAAR 764
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKELEE-------KLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 765 DHETV---VYKLKAESEKMKMELKRTHA-----AETEVTLEKANSRLKQIEKEYTQKLAKSsqiIAELQTTISSLKEENS 836
Cdd:PRK03918 526 EYEKLkekLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPFYN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 837 RL--QLAAERRLQDVIQKFEDEKKQL--IRDNDQAIKALQEELENRSNQVRCAEKKLQHKELEsqEQITYIRQEYETKFK 912
Cdd:PRK03918 603 EYleLKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYLELSRELAGLRA 680
|
570 580 590
....*....|....*....|....*....|....*.
gi 1796484850 913 GLMPA-SLRQELEDTISSLKSQVITRSRPFLRVQLM 947
Cdd:PRK03918 681 ELEELeKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
299-906 |
1.78e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 299 ILYKKKQNEMEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLhnAVAEMEKEKFDLQKRHT 378
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYL--LYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 379 ENIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELESrVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKA- 457
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE-KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKe 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 458 -RRNSLHKEKDHLTNDYEQNMKLFQTKYDADINLLKKEHALSSSKASGMIKELEQNICQLKQQLQESELQRKKQLRDQEN 536
Cdd:pfam02463 323 kKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 537 KFQ--MEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNS 614
Cdd:pfam02463 403 EEKeaQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 615 EKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQ-------RYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV 687
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRiisahgrLGDLGVAVENYKVAISTAVIVEVSATADEVEE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 688 RDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHVNSQRKQQLVELGLLREEEKQK---AAR 764
Cdd:pfam02463 563 RQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKlkeSAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 765 DHETVVYKLKAESEKMKMELKRThAAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAER 844
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVK-ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1796484850 845 RLQDVIQKFEDEKKQLIRDNDQAIKALQEELENRSNQVRCAEKKLQHKELESQEQITYIRQE 906
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKT 783
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
236-898 |
2.26e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 236 SLRKSSSLHEDPLRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKILYKKKQNEMEETIRKL 315
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 316 EKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKEkfDLQKRHTENIQELLEDTNMRLNKM 395
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED--LLKEEKKEELEILEEEEESIELKQ 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 396 EGEYMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELeriyqitCNELQEVKARRNSLHKEKDHLTNDYEQ 475
Cdd:pfam02463 444 GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELL-------LSRQKLEERSQKESKARSGLKVLLALI 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 476 NMKLFQTKYDADINLLKKEHALSSSKASGMIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLKRTCEKKIHD 555
Cdd:pfam02463 517 KDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAV 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 556 LESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVETDLTRS 635
Cdd:pfam02463 597 LEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 636 KSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLLQQHN--AEKDSLVRDHEREIENLEKQLRAANMEHENQIQ 713
Cdd:pfam02463 677 EIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEllADRVQEAQDKINEELKLLKQKIDEEEEEEEKSR 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 714 EFKKRDSQVIADMEAQVHKLREELIHVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKmkmelKRTHAAETE 793
Cdd:pfam02463 757 LKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQL-----LIEQEEKIK 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 794 VTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQ--LIRDNDQAIKAL 871
Cdd:pfam02463 832 EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEekKELEEESQKLNL 911
|
650 660
....*....|....*....|....*..
gi 1796484850 872 QEELENRSNQVRCAEKKLQHKELESQE 898
Cdd:pfam02463 912 LEEKENEIEERIKEEAEILLKYEEEPE 938
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
251-860 |
4.31e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 251 RMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKILYKKKQNEMEETIRKLEKKVQILIRDCQVIR 330
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 331 ETKENQITELKKICEQSTEslnndwEKKLHNAVAEMEKEKFDLQKRHtENIQELLEDTNMRLNKMEGEYMAQTQSTNQMV 410
Cdd:COG1196 313 ELEERLEELEEELAELEEE------LEELEEELEELEEELEEAEEEL-EEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 411 KELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQitcnELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYDADINL 490
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEE----ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 491 LKKehalssskasgmIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLkrtcekkiHDLESELGKEKEETQKK 570
Cdd:COG1196 462 LEL------------LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE--------GFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 571 IHKLEEALKEKEEQLTRVTEV--QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSW 648
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAalAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 649 QLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIEnLEKQLRAANMEHENQIQEFKKRDSQVIADMEA 728
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE-VTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 729 QVHKLREELIHVNSQRKQQLVELGLLREEEKQKAARDHEtvvyKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEK 808
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE----ELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1796484850 809 EYTQKLAKSSQIIAELQTTISSL-----------KEENSRLQ---------LAAERRLQDVIQKFEDEKKQL 860
Cdd:COG1196 757 PEPPDLEELERELERLEREIEALgpvnllaieeyEELEERYDflseqredlEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
501-882 |
5.26e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 501 KASGMIKELEQNICQLKQQLQEselqrkkqLRDQENKFQMEKSHLKRTCE--KKIHDLE-SELGKEKEETQKKIHKLEEA 577
Cdd:TIGR02169 174 KALEELEEVEENIERLDLIIDE--------KRQQLERLRREREKAERYQAllKEKREYEgYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 578 LKEKEEQLTRVTEV---QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVETDLTRSKSlREKQSKEFSWQLEEVR 654
Cdd:TIGR02169 246 LASLEEELEKLTEEiseLEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER-SIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 655 QRYEQQIVELKLEHEQEKTHlLQQHNAEKDSL---VRDHEREIENLEKQLRAANMEHENQIQEFKKRdSQVIADMEAQVH 731
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELERE-IEEERKRRDKLteeYAELKEELEDLRAELEEVDKEFAETRDELKDY-REKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 732 KLREELIHVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEYT 811
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1796484850 812 QKLAKSSQIIAELQTTISSLKEEnSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAIKALQEELENRSNQV 882
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEER-VRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNV 552
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
354-898 |
9.22e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 9.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 354 DWEKKLHNAVAEMEKEKFDLqKRHTENIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELESRVQQLTGEA-------EN 426
Cdd:pfam15921 89 DLQRRLNESNELHEKQKFYL-RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKclkedmlED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 427 SNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYEQNMklfqtkydadinllkkehalsSSKASGMI 506
Cdd:pfam15921 168 SNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSL---------------------GSAISKIL 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 507 KELEQNICQLKQQLQESELQRKKQLRDQENKFQMekshLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLT 586
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIEL----LLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 587 RVTEVQRLQAQQADAALEEFKRQV-ELNSE-----KVYAEMKEQMEK----VETDLTRSKSLREKQSKE---FSWQLEEV 653
Cdd:pfam15921 303 IIQEQARNQNSMYMRQLSDLESTVsQLRSElreakRMYEDKIEELEKqlvlANSELTEARTERDQFSQEsgnLDDQLQKL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 654 RQRYEQQIVELKLEHEQEKtHLLQQHNAekDSLVRDHereienLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKL 733
Cdd:pfam15921 383 LADLHKREKELSLEKEQNK-RLWDRDTG--NSITIDH------LRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 734 R---EELIHVNSQRKQQLVELGLLREEEKQKAARdhetvvyKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEY 810
Cdd:pfam15921 454 QgknESLEKVSSLTAQLESTKEMLRKVVEELTAK-------KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 811 TQKLAKSSQIIAELQTTISSLKE-ENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAIKALQEELENrsnqvrcAEKKL 889
Cdd:pfam15921 527 DLKLQELQHLKNEGDHLRNVQTEcEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ-------LEKEI 599
|
....*....
gi 1796484850 890 QHKELESQE 898
Cdd:pfam15921 600 NDRRLELQE 608
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
236-934 |
1.35e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 236 SLRKSSSLHEDPLRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKILY---KKKQNEMEETI 312
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 313 RKLEKKVQ---ILIRDC----QVIRETKENQITELKKICEQSTESLNNDWEKKLhnAVAEMEKEKFDLQKRHT------E 379
Cdd:TIGR02168 284 EELQKELYalaNEISRLeqqkQILRERLANLERQLEELEAQLEELESKLDELAE--ELAELEEKLEELKEELEsleaelE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 380 NIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELES---RVQQLTGEAENSNLQRQKLIQEKLELERiyQITCNELQEVK 456
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnnEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 457 ARRNSLHKEKDHLtndyeqnmklfQTKYDADINLLKKehalssskASGMIKELEQNICQLKQQLQESElQRKKQLRDQEN 536
Cdd:TIGR02168 440 AELEELEEELEEL-----------QEELERLEEALEE--------LREELEEAEQALDAAERELAQLQ-ARLDSLERLQE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 537 KFQMEKSHLKRTCEKK-----IHDLESELGKEKEETQKKIhklEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQV- 610
Cdd:TIGR02168 500 NLEGFSEGVKALLKNQsglsgILGVLSELISVDEGYEAAI---EAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFl 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 611 ELNSEKVY------AEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVR--QRYEQQIVELKLEHEQEKTHLLQQH--- 679
Cdd:TIGR02168 577 PLDSIKGTeiqgndREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvDDLDNALELAKKLRPGYRIVTLDGDlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 680 --------NAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQvIADMEAQVHKLREELIHVNSQRKQQLVEL 751
Cdd:TIGR02168 657 pggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 752 GLLREEEKQKAAR----DHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEytqkLAKSSQIIAELQTT 827
Cdd:TIGR02168 736 ARLEAEVEQLEERiaqlSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE----LKALREALDELRAE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 828 ISSLKEENSRLQLAA---ERRLQDVIQKFEDEKKQlIRDNDQAIKALQEELENRSNQVRCAEKKLQHKELE---SQEQIT 901
Cdd:TIGR02168 812 LTLLNEEAANLRERLeslERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEELEELIEELESELEALLNErasLEEALA 890
|
730 740 750
....*....|....*....|....*....|....
gi 1796484850 902 YIRQEYETKFKGLMPASL-RQELEDTISSLKSQV 934
Cdd:TIGR02168 891 LLRSELEELSEELRELESkRSELRRELEELREKL 924
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-898 |
1.41e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 254 EKELDIKTKMIEAKCHEeKLKLQQKHDADVQKI---LERKNNEIEELKILYKKKQNEMEETIRKLEK------------- 317
Cdd:TIGR02169 211 ERYQALLKEKREYEGYE-LLKEKEALERQKEAIerqLASLEEELEKLTEEISELEKRLEEIEQLLEElnkkikdlgeeeq 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 318 -KVQILIRDCQVIRETKENQITELKKICEQSTESLNNDwEKKLHNAVAEMEKEKFDL--QKRHTENIQELLEDTNMRLNK 394
Cdd:TIGR02169 290 lRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL-EAEIDKLLAEIEELEREIeeERKRRDKLTEEYAELKEELED 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 395 ME---GEYMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTN 471
Cdd:TIGR02169 369 LRaelEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 472 D-YEQNMKLFQTKydADINLLKKEHALSSSKasgmIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKshLKRTCE 550
Cdd:TIGR02169 449 EiKKQEWKLEQLA--ADLSKYEQELYDLKEE----YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE--VLKASI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 551 KKIHDLESELGKEKEETQKKIHK-----------------LEEALKEKEEQLTRVT--EVQRLQAQQADAA--------- 602
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERYATAIEVaagnrlnnvvveddavaKEAIELLKRRKAGRATflPLNKMRDERRDLSilsedgvig 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 603 ----LEEFKRQVE------LNSEKVYAEM---KEQMEKV-----ETDLTRSK------SLREKQSKEFSWQLEEVRQRYE 658
Cdd:TIGR02169 601 favdLVEFDPKYEpafkyvFGDTLVVEDIeaaRRLMGKYrmvtlEGELFEKSgamtggSRAPRGGILFSRSEPAELQRLR 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 659 QQIVELKLEHE--QEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQvIADMEAQVHKLREE 736
Cdd:TIGR02169 681 ERLEGLKRELSslQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED-LSSLEQEIENVKSE 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 737 LIHVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHA--AETEVTLEKANSRLKQIEKEYTQKL 814
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArlREIEQKLNRLTLEKEYLEKEIQELQ 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 815 akssQIIAELQTTISSLKEENSRLQLAAERRLQDViqkfeDEKKQLIRDNDQAIKALQEELENRSNQVRCAEKKLQHKEL 894
Cdd:TIGR02169 840 ----EQRIDLKEQIKSIEKEIENLNGKKEELEEEL-----EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
....
gi 1796484850 895 ESQE 898
Cdd:TIGR02169 911 QIEK 914
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
597-855 |
1.41e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 597 QQADAALEEFKRqvelnsekvYAEMKEQMEKVETDLTRSKSLREKQSKefswqLEEVRQRYEQQ---IVELKLEHEQEKT 673
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER-----YAAARERLAELeylRAALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 674 HLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHVNSQRKQ---QLVE 750
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 751 LGLLREEEKQKAARDHETVVYKLKAESEkmKMELKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISS 830
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEE--ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
250 260
....*....|....*....|....*....
gi 1796484850 831 LKEE----NSRLQLAAErrLQDVIQKFED 855
Cdd:COG4913 449 LAEAlgldEAELPFVGE--LIEVRPEEER 475
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
516-859 |
1.62e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 516 LKQQLQESELQRKKQLRDQENKFQ-MEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQ---LTRVTEV 591
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQErmaMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 592 QRLQaqqadaaLEEFKRQVE-LNSEKVYAEMKEQMEKVETDLTRS-KSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHE 669
Cdd:pfam17380 351 ERIR-------QEERKRELErIRQEEIAMEISRMRELERLQMERQqKNERVRQELEAARKVKILEEERQRKIQQQKVEME 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 670 QEKThllQQHNAEKDSLVRDHEREIENLEKqLRAANMEHENQIQEFKKRDSQviadmeaqvhKLREELIHVNSQRKQQLV 749
Cdd:pfam17380 424 QIRA---EQEEARQREVRRLEEERAREMER-VRLEEQERQQQVERLRQQEEE----------RKRKKLELEKEKRDRKRA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 750 ELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEYTQKlakssqiiaeLQTTIS 829
Cdd:pfam17380 490 EEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRR----------IQEQMR 559
|
330 340 350
....*....|....*....|....*....|
gi 1796484850 830 SLKEENSRLQlAAERRLQDVIQKFEDEKKQ 859
Cdd:pfam17380 560 KATEERSRLE-AMEREREMMRQIVESEKAR 588
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
270-910 |
6.03e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 6.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 270 EEKLKLQQKHDADVQKILERKNNEIEELKILYKKKQNEmeETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQste 349
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE--EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK--- 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 350 slnndweKKLHNAVAEMEKEKFDLQKRHTENiqelledtnmrlNKMEGEYMAQTQSTNQMVKELESRVQQLTGEAENSNL 429
Cdd:PTZ00121 1290 -------KKADEAKKAEEKKKADEAKKKAEE------------AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 430 QRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYDADiNLLKKEHAlsSSKASGMIKEL 509
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD-ELKKAAAA--KKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 510 EQnicqlKQQLQESELQRKKQLRDQENKFQMEKSHLKRTCEKKihdleSELGKEKEETQKKihkleEALKEKEEQLTRVT 589
Cdd:PTZ00121 1428 EE-----KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK-----AEEAKKADEAKKK-----AEEAKKADEAKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 590 EVQRLQAQQADAALEEFKRQVEL---NSEKVYAEMKEQMEKVETDltRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKL 666
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAkkaEEAKKADEAKKAEEAKKAD--EAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 667 EHEQEKTHLLQQ----HNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHVNS 742
Cdd:PTZ00121 1571 KAEEDKNMALRKaeeaKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 743 QRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMK-MELKRTHAAETEvtlekansRLKQIEKEYTQKLAKSSQII 821
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKaAEALKKEAEEAK--------KAEELKKKEAEEKKKAEELK 1722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 822 AELQttISSLKEENSRLQLAAERRLQDVIQKFEDEKKQlirdndqaIKALQEELENRSNQVRCAEKKLQHKELESQEQIT 901
Cdd:PTZ00121 1723 KAEE--ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK--------IAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
....*....
gi 1796484850 902 YIRQEYETK 910
Cdd:PTZ00121 1793 RMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-934 |
9.03e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 9.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 271 EKLKLQqkhdADVQKILERKNNEIEELKI-LYKKKQNEMEETIRKLEKKVQILIRDCQVIRE---TKENQITELKKICEQ 346
Cdd:TIGR02168 203 KSLERQ----AEKAERYKELKAELRELELaLLVLRLEELREELEELQEELKEAEEELEELTAelqELEEKLEELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 347 STESLNnDWEKKLHNAVA-----EMEKEKFDLQKRHTENIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELESRVQQLT 421
Cdd:TIGR02168 279 LEEEIE-ELQKELYALANeisrlEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 422 GEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKE----KDHLTNDYEQNMKLFQTKYDADINLLKKEHAL 497
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEierlEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 498 SSSKASGMIKELEQNICQLKQQLQESELQRkKQLRDQENKFQMEKSHLKRTcEKKIHDLESELGKEKEETQ--KKIHKLE 575
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELR-EELEEAEQALDAAERELAQL-QARLDSLERLQENLEGFSEgvKALLKNQ 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 576 EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVE--------------TDLTRSKSLREK 641
Cdd:TIGR02168 516 SGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNElgrvtflpldsikgTEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 642 QSKEFSWQLEEVRQRYEQ------------QIVElKLEHEQEKTHLLQQHN--------------------AEKDSLVRD 689
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKlrkalsyllggvLVVD-DLDNALELAKKLRPGYrivtldgdlvrpggvitggsAKTNSSILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 690 HEREIENLEKQLRAANMEHENQIQEFKKRDSQvIADMEAQVHKLREELIHVNSQRKQQLVELGLLREEEKQKAAR----D 765
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERiaqlS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 766 HETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEytqkLAKSSQIIAELQTTISSLKEENSRLQLAAERR 845
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE----LKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 846 LQDViqkfeDEKKQLIRDNDQAIKALQEELENRSNQVRcaekKLQHKELESQEQITYIRQEYETKFKGLMPASLR-QELE 924
Cdd:TIGR02168 830 ERRI-----AATERRLEDLEEQIEELSEDIESLAAEIE----ELEELIEELESELEALLNERASLEEALALLRSElEELS 900
|
730
....*....|
gi 1796484850 925 DTISSLKSQV 934
Cdd:TIGR02168 901 EELRELESKR 910
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
509-934 |
1.06e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 509 LEQNICQLKQQLQESELQRKK--QLRDQENKFQMEkshLKRTCEKKIHDLESELGKEKEETQKKihkleealKEKEEQLT 586
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAmaDIRRRESQSQED---LRNQLQNTVHELEAAKCLKEDMLEDS--------NTQIEQLR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 587 RVTEVQRLQAQQADAALEEFKrqvELNSEKVYaemkEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQR---YEQQIVE 663
Cdd:pfam15921 177 KMMLSHEGVLQEIRSILVDFE---EASGKKIY----EHDSMSTMHFRSLGSAISKILRELDTEISYLKGRifpVEDQLEA 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 664 LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdsqviadmeAQVHKLREELIHVNSQ 743
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ--------------SQLEIIQEQARNQNSM 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 744 RKQQLVELgllreeekqkaardhETVVYKLKAESEKMKmELKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAE 823
Cdd:pfam15921 315 YMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 824 LQTTISSLKEENSRLQLAAERrlqdviqkfedEKKQLIRD--NDQAIKALQEELENRSNQVRCAEKKLQHKELESQEQIT 901
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQ-----------NKRLWDRDtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430
....*....|....*....|....*....|....
gi 1796484850 902 YIRQEYETKFKGLMP-ASLRQELEDTISSLKSQV 934
Cdd:pfam15921 448 RQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVV 481
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
294-897 |
1.54e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 294 IEELKILYKKKQNEMEETIRKLEKKVQILIRDCQVIRETKENQITELK----KICEQSTESLNND----WEKKLHNAVAE 365
Cdd:TIGR01612 1102 GKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKaqinDLEDVADKAISNDdpeeIEKKIENIVTK 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 366 MEKEK--FDLQKRHTENIQELLEDTNmRLNKMEGEYMAQTQSTNQMVKElesRVQQLTGEAENSNLQRQKLIQekleler 443
Cdd:TIGR01612 1182 IDKKKniYDEIKKLLNEIAEIEKDKT-SLEEVKGINLSYGKNLGKLFLE---KIDEEKKKSEHMIKAMEAYIE------- 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 444 iyqitcnELQEVKARRNSLHKEKDhLTNDYEQNMKLFQTKYDADinllkKEHALSSSKASGMIKELeqnicqlkqqlqes 523
Cdd:TIGR01612 1251 -------DLDEIKEKSPEIENEMG-IEMDIKAEMETFNISHDDD-----KDHHIISKKHDENISDI-------------- 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 524 elqRKKQLRDQENKFQmekshlkrtcEKKIHDLESELGKEKEETQKKihklEEALKEKEEQLTRVTEVQRL-QAQQADAA 602
Cdd:TIGR01612 1304 ---REKSLKIIEDFSE----------ESDINDIKKELQKNLLDAQKH----NSDINLYLNEIANIYNILKLnKIKKIIDE 1366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 603 LEEFKRQVELNSEKVYAEMkEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELkleheqeKTHLLQQHnAE 682
Cdd:TIGR01612 1367 VKEYTKEIEENNKNIKDEL-DKSEKLIKKIKDDINLEECKSKIESTLDDKDIDECIKKIKEL-------KNHILSEE-SN 1437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 683 KDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHVNS------QRKQQLVELGLLRE 756
Cdd:TIGR01612 1438 IDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGckdeadKNAKAIEKNKELFE 1517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 757 EEKQK--------AARDHETVVYKLKAESEKMKMELKRTHAAETeVTLEKANSRLKQIEKEY------TQKLAKSSQIIA 822
Cdd:TIGR01612 1518 QYKKDvtellnkySALAIKNKFAKTKKDSEIIIKEIKDAHKKFI-LEAEKSEQKIKEIKKEKfrieddAAKNDKSNKAAI 1596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 823 ELQTTISSLkeENSRLQLA-AERRLQDVIQKFEDEKKQL-----------IRDNDQAIKALQEELENRSNQVRCAE-KKL 889
Cdd:TIGR01612 1597 DIQLSLENF--ENKFLKISdIKKKINDCLKETESIEKKIssfsidsqdteLKENGDNLNSLQEFLESLKDQKKNIEdKKK 1674
|
....*...
gi 1796484850 890 QHKELESQ 897
Cdd:TIGR01612 1675 ELDELDSE 1682
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
237-819 |
1.55e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 237 LRKSSSLHEDPLRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKIL--YKKKQNEMEETIRK 314
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 315 LEKKVQILIRDCQVIRETKENQITELKKICEQS-TESLNNDWEKKLHNAV---AEMEKEKFDLQKRHTENIQELLEDTNM 390
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAkkkAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 391 RLNKMEGEYMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQ---EVKARRNSLHKEKD 467
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 468 HLTNDYEQNMKLFQTKYDAD--INLLKKEHALSSSKASGMIKELEQNICQLKQQLQE----SELQRKKQLRDQENKFQME 541
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADeaKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElkkaEELKKAEEKKKAEEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 542 --------KSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELN 613
Cdd:PTZ00121 1574 edknmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 614 SEKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRDH 690
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 691 EREIENLEKQLRAANMEHEnqiQEFKKRDSQVIADMEAQVHKLREELIHVNSQRKQQLVELGLLREEEKQKAARDHETVV 770
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANI 1810
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1796484850 771 YKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQ 819
Cdd:PTZ00121 1811 IEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
259-877 |
2.04e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 259 IKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELkilyKKKQNEMEETIRKLEKKVQILIRDCQVIRE------- 331
Cdd:TIGR04523 42 LKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKIL----EQQIKDLNDKLKKNKDKINKLNSDLSKINSeikndke 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 332 ---TKENQITELKKICEQSTESL--NNDWEKKLHNAVAEMEKEKFDLQKRHTE-------------NIQELLEDTNMRLN 393
Cdd:TIGR04523 118 qknKLEVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEElenelnllekeklNIQKNIDKIKNKLL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 394 KMEgEYMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDY 473
Cdd:TIGR04523 198 KLE-LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 474 EQNMKLFQTKYDADINLLKKEHALSSSKASGMIKELEQNICQLKQQLQESELQRKK------QLRDQENKFQMEKSHLKR 547
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnkiisQLNEQISQLKKELTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 548 TCEKKIHDLEselgkEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVElnsekvyaEMKEQMEK 627
Cdd:TIGR04523 357 ENSEKQRELE-----EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK--------KLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 628 VETDLTRSKSLREKQSKEFSwQLEEVRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREIENLEKQLRAANME 707
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIK-DLTNQDSVKELIIKNLDNTRESLETQL-----KVLSRSINKIKQNLEQKQKELKSKEKE 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 708 HENQIQEfKKRDSQVIADMEAQVHKLREELIHVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKrt 787
Cdd:TIGR04523 498 LKKLNEE-KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELK-- 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 788 haaETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQlAAERRLQDVIQKFEDEKKQLIrdndQA 867
Cdd:TIGR04523 575 ---QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK-KENEKLSSIIKNIKSKKNKLK----QE 646
|
650
....*....|
gi 1796484850 868 IKALQEELEN 877
Cdd:TIGR04523 647 VKQIKETIKE 656
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
590-916 |
2.44e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 590 EVQRLQAQQADAALE-EFKRQVELNSEKVYAEMKEQM----EKVETDLTRSKSLREKQSKEFSWQLEEVRQryEQQIVEL 664
Cdd:pfam17380 297 EQERLRQEKEEKAREvERRRKLEEAEKARQAEMDRQAaiyaEQERMAMERERELERIRQEERKRELERIRQ--EEIAMEI 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 665 KLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQViadMEAQVHKLREEL------I 738
Cdd:pfam17380 375 SRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEA---RQREVRRLEEERaremerV 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 739 HVNSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRlKQIEKEYTQKlaksS 818
Cdd:pfam17380 452 RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR-KLLEKEMEER----Q 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 819 QIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLirdndqaiKALQEElenRSNQVRCAEKKLQHKELESQE 898
Cdd:pfam17380 527 KAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------EAMERE---REMMRQIVESEKARAEYEATT 595
|
330
....*....|....*...
gi 1796484850 899 QITYIRQEYETKFKGLMP 916
Cdd:pfam17380 596 PITTIKPIYRPRISEYQP 613
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
340-927 |
2.45e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 340 LKKICEQSTESLNNDWEKKLHNAVAEMEKEKFDLQKRHTENIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELESrVQQ 419
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE-ALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 420 LTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYDADINLLKKE-HALS 498
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRiHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 499 SSKASGMIKELEQNICQLKQQLQESELQRKKQ--------LRDQENKFQMEKSHLKR--TCEKKIHDLESELGKEKEETQ 568
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQtlhsqeihIRDAHEVATSIREISCQqhTLTQHIHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 569 KKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVETDLTRSKSLREKQSKefsw 648
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE---- 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 649 QLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhenQIQEFKKRDSQVIADMEA 728
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 729 QVHKLREELIHVNSQRKQQLVELGLLRE------EEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSR 802
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQcdnrskEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 803 LKQIEKEYTQKLAKSSQIIAELQTTISSLKEENS-----RLQLAAERRLQDVIQKFEDEKKQL-------------IRDN 864
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTLTQERVREHalsirVLPKELLASRQLALQKMQSEKEQLtywkemlaqcqtlLREL 709
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1796484850 865 DQAIKALQEELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKFKGLMPASLRQELEDTI 927
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA 772
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
597-864 |
8.25e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.37 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 597 QQADAALEEFKRQVELNSE-------KVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVE-LKLEH 668
Cdd:PRK04778 172 KQLENLEEEFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEgYHLDH 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 669 EQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN---------MEHE----NQIQEFKKRDSQVIADMEAQVHKLRE 735
Cdd:PRK04778 252 LDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTLPDFLEHAKEQNKELKE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 736 ELIHVNsqrkqqlvELGLLREEEKQKaARDHETVVYKLKAESEKMKMELKRTHAAETEV--TLEKANSRLKQIEKEytqk 813
Cdd:PRK04778 332 EIDRVK--------QSYTLNESELES-VRQLEKQLESLEKQYDEITERIAEQEIAYSELqeELEEILKQLEEIEKE---- 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1796484850 814 lakssqiIAELQTTISSLKEEnsrlQLAAERRLQDVIQKFEDEKKQLIRDN 864
Cdd:PRK04778 399 -------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-640 |
9.06e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 9.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 264 IEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKILYKKKQNEMEETIRKL---EKKVQILIRDCQVIRETKENQITEL 340
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 341 KKICEQSTEslNNDWEKKLHNAVAEMEKEKFDLQKRhTENIQELLEDTNMRLNKMEGEYmaqtQSTNQMVKELESRVQQL 420
Cdd:TIGR02168 757 TELEAEIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 421 TGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYEQnmklfqtkydadINLLKKEHALSSS 500
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS------------LEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 501 KASGMIKELEQNICQLKQQLQESElQRKKQLRDQENKFQMEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKE 580
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1796484850 581 KEEQLTRVTEVQRlqaqqadAALEEFKRQvelnsEKVYAEMKEQMEkvetDLTRSK-SLRE 640
Cdd:TIGR02168 977 LENKIKELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAKeTLEE 1021
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
529-910 |
9.23e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 9.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 529 KQLRDQENKFQMEKSHLKRtCEKKIHDLEsELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQaqQADAALEEFKR 608
Cdd:COG4717 71 KELKELEEELKEAEEKEEE-YAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELE--ALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 609 QVE--LNSEKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSL 686
Cdd:COG4717 147 RLEelEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL-----EEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 687 VRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHV-------------------------- 740
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgllallflllarekaslg 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 741 -NSQRKQQLVELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSS- 818
Cdd:COG4717 302 kEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGv 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 819 ----------QIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAIKALQEELENrsNQVRCAEKK 888
Cdd:COG4717 382 edeeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEE--LREELAELE 459
|
410 420
....*....|....*....|..
gi 1796484850 889 LQHKELESQEQITYIRQEYETK 910
Cdd:COG4717 460 AELEQLEEDGELAELLQELEEL 481
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
271-877 |
1.00e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.37 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 271 EKLKLQQKHDADVQKILERKNneiEELKILYKKKQNEMEETIRKLEKKVQILIRDCQVIRETKENQ---ITELKKICEQS 347
Cdd:pfam12128 340 ETAAADQEQLPSWQSELENLE---ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIreaRDRQLAVAEDD 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 348 TESLNNDWEKKLHNAVAEMEKEKFDLQKRhteniqelLEDTNMRLNkmegeymaQTQSTNQMVKELESRVQQLtgEAENS 427
Cdd:pfam12128 417 LQALESELREQLEAGKLEFNEEEYRLKSR--------LGELKLRLN--------QATATPELLLQLENFDERI--ERARE 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 428 NLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKdhLTNDYEQNMKLFQTKYDADINLLKKEHALSSSKASGMIK 507
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEE--RQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVIS 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 508 ELEQNICQLKQQLQESELQrkkqlrdQENKFQMEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTR 587
Cdd:pfam12128 557 PELLHRTDLDPEVWDGSVG-------GELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQ 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 588 VT-EVQRLQAQQADAAleEFKRQVELNSEKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQ---LEEVRQRYEQQIVE 663
Cdd:pfam12128 630 ANgELEKASREETFAR--TALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQlkqLDKKHQAWLEEQKE 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 664 LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAanmeHENQIQEFKKR-------DSQVIADMEAQVHKLREE 736
Cdd:pfam12128 708 QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKA----ELKALETWYKRdlaslgvDPDVIAKLKREIRTLERK 783
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 737 LIHVNSQRKQQLVELGLLREEEKQKAARdHETVVYKLKAESEKMKMELKRThAAETEVTLEKANSRLKQIEKEYTQklak 816
Cdd:pfam12128 784 IERIAVRRQEVLRYFDWYQETWLQRRPR-LATQLSNIERAISELQQQLARL-IADTKLRRAKLEMERKASEKQQVR---- 857
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1796484850 817 ssqiIAELQTTISSLKEENSRLQLAAE-RRLQDVIQKFEDEKKQLIRDNDQAIKALQEELEN 877
Cdd:pfam12128 858 ----LSENLRGLRCEMSKLATLKEDANsEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEH 915
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
589-751 |
1.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 589 TEVQRLQAQ--QADAALEEFKRQ---VELNSE-----KVYAEMKEQMEKVETDLTRSKSLR---EKQSKEFSWQLEEVR- 654
Cdd:COG3206 182 EQLPELRKEleEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAEARAELAEAEARLaalRAQLGSGPDALPELLq 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 655 ----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQV 730
Cdd:COG3206 262 spviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQL 336
|
170 180
....*....|....*....|.
gi 1796484850 731 HKLREELIHVNSQRkQQLVEL 751
Cdd:COG3206 337 AQLEARLAELPELE-AELRRL 356
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
270-793 |
1.15e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 270 EEKLKLQqkhDADVQKILERKNNEIEELKILYKKKQNEMEeTIRKLEKKVQILIRDCQVIRETKENQITELKKicEQSTE 349
Cdd:pfam05483 274 EEKTKLQ---DENLKELIEKKDHLTKELEDIKMSLQRSMS-TQKALEEDLQIATKTICQLTEEKEAQMEELNK--AKAAH 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 350 SLnndWEKKLHNAVAEMEkEKFDLQKRHTENIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELEsRVQQLTGEAE---N 426
Cdd:pfam05483 348 SF---VVTEFEATTCSLE-ELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE-ELKKILAEDEkllD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 427 SNLQRQKLIQE----KLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYE------QNMKLFQTKYDADINLLKKEHA 496
Cdd:pfam05483 423 EKKQFEKIAEElkgkEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEdlktelEKEKLKNIELTAHCDKLLLENK 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 497 LSSSKASGMIKEL---EQNICQLKQQlQESELQRKKQLRDQENKFQMEKSHLKRTCEKKIHDLESELGKEkEETQKKIHK 573
Cdd:pfam05483 503 ELTQEASDMTLELkkhQEDIINCKKQ-EERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKS-EENARSIEY 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 574 LEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQmekvetdltrskSLREKQSKEFSWQLEEV 653
Cdd:pfam05483 581 EVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQL------------NAYEIKVNKLELELASA 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 654 RQRYEQQIVELKLEHEQEKThllqqhnaekdslvrDHEREIENLEKQLRAANMEHENQiQEFKKRDSQVIADMEAQVHKL 733
Cdd:pfam05483 649 KQKFEEIIDNYQKEIEDKKI---------------SEEKLLEEVEKAKAIADEAVKLQ-KEIDKRCQHKIAEMVALMEKH 712
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1796484850 734 REELIHVNSQRKQqlvELGLL--REEEKQKAARDHETVVYKLKAE--------------SEKMKMELKRTHAAETE 793
Cdd:pfam05483 713 KHQYDKIIEERDS---ELGLYknKEQEQSSAKAALEIELSNIKAEllslkkqleiekeeKEKLKMEAKENTAILKD 785
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
278-840 |
1.21e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 278 KHDADVQKILERKNNEIEELKILYKKKQNEMEEtirklekkvQILIRDCQVIR-ETKENQITELKKICEQSTESLNNDWE 356
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKIEELEK---------QLVLANSELTEaRTERDQFSQESGNLDDQLQKLLADLH 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 357 KKLHNAVAEMEKEKfDLQKRHTEN------IQELLEDTNMRLNKMEG-------------------------------EY 399
Cdd:pfam15921 388 KREKELSLEKEQNK-RLWDRDTGNsitidhLRRELDDRNMEVQRLEAllkamksecqgqmerqmaaiqgkneslekvsSL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 400 MAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDyEQNMKL 479
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLRN 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 480 FQTKYDAdinlLKKEHAlssskasgmikELEQNICQLKQQLqESELQRKKQLRDQENKFQMEKSHLkrtcEKKIHDLESE 559
Cdd:pfam15921 546 VQTECEA----LKLQMA-----------EKDKVIEILRQQI-ENMTQLVGQHGRTAGAMQVEKAQL----EKEINDRRLE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 560 LGKEKEETQKKihkleealkekeeqltrVTEVQRLQAQQADAALEEFKrQVELNSEKVYA--EMKEQMEKVETDLTRSKS 637
Cdd:pfam15921 606 LQEFKILKDKK-----------------DAKIRELEARVSDLELEKVK-LVNAGSERLRAvkDIKQERDQLLNEVKTSRN 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 638 LREKQSKEFSWQLEEVRQRYEQQIV---ELKLEHEQEKTHLLQQHNAEKdslvrdherEIENLEKQLRAANMEHENQIQE 714
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNKSEEMETttnKLKMQLKSAQSELEQTRNTLK---------SMEGSDGHAMKVAMGMQKQITA 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 715 FKKRdsqvIADMEAQVHKLREELIHVNSQRKqqlvelglLREEEKQKAARDHETVVyklkaeSEKMKMelkrthAAETEV 794
Cdd:pfam15921 739 KRGQ----IDALQSKIQFLEEAMTNANKEKH--------FLKEEKNKLSQELSTVA------TEKNKM------AGELEV 794
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1796484850 795 tLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQL 840
Cdd:pfam15921 795 -LRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKL 839
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
584-900 |
1.44e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 45.52 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 584 QLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVyaemKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVE 663
Cdd:pfam09731 68 QPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEV----AEEEKEATKDAAEAKAQLPKSEQEKEKALEEVLKEAISKAES 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 664 LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKrdsqVIADMEAQVHKLREELIHVNSQ 743
Cdd:pfam09731 144 ATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALAEKLKE----VINLAKQSEEEAAPPLLDAAPE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 744 RKQQLVElGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRthaaETEVTLEKANSRLKQIEKEYTQKLAKssqIIAE 823
Cdd:pfam09731 220 TPPKLPE-HLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQ----ELVSIFPDIIPVLKEDNLLSNDDLNS---LIAH 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 824 LQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAIKA--------LQEELENRSNQVRCAEKKLQHKELE 895
Cdd:pfam09731 292 AHREIDQLSKKLAELKKREEKHIERALEKQKEELDKLAEELSARLEEvraadeaqLRLEFEREREEIRESYEEKLRTELE 371
|
....*
gi 1796484850 896 SQEQI 900
Cdd:pfam09731 372 RQAEA 376
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
496-725 |
1.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 496 ALSSSKASGMIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLKR--TCEKKIHDLESELG---KEKEETQKK 570
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaALARRIRALEQELAaleAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 571 IHKLEEALKEKEEQL-TRVTEVQRLQAQQADAAL------EEFKRQVELnSEKVYAEMKEQMEKVETDLTRSKSLREKQS 643
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 644 KEFSwQLEEVRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDSQVI 723
Cdd:COG4942 171 AERA-ELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 1796484850 724 AD 725
Cdd:COG4942 245 AA 246
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
261-933 |
2.04e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 261 TKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEE--LKILYKKKQNE-------MEETIRKLEKKV----QILIRDCQ 327
Cdd:TIGR01612 873 TNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyQNINTLKKVDEyikicenTKESIEKFHNKQnilkEILNKNID 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 328 VIRETKE--------------NQITELKKICEQ----STESLNNDWEKKLHNAVAEMEKEK-------FDLQKRHTENIQ 382
Cdd:TIGR01612 953 TIKESNLieksykdkfdntliDKINELDKAFKDaslnDYEAKNNELIKYFNDLKANLGKNKenmlyhqFDEKEKATNDIE 1032
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 383 ELLEDTNMRLNKME-----GEYMAQTQSTNQMVKELESRVQQLTGEAeNSNLQRQKLIQEKLELERIYQIT-------CN 450
Cdd:TIGR01612 1033 QKIEDANKNIPNIEiaihtSIYNIIDEIEKEIGKNIELLNKEILEEA-EINITNFNEIKEKLKHYNFDDFGkeenikyAD 1111
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 451 ELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYD---ADINLLKK--EHALSSSKASGMIKeleqnicqlKQQLQESEL 525
Cdd:TIGR01612 1112 EINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDeikAQINDLEDvaDKAISNDDPEEIEK---------KIENIVTKI 1182
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 526 QRKKQLRDQENKFQMEKSHLKR--TCEKKIHDLESELGK------------EKEETQKKIHKLEEALKEKEEQLTRVTEV 591
Cdd:TIGR01612 1183 DKKKNIYDEIKKLLNEIAEIEKdkTSLEEVKGINLSYGKnlgklflekideEKKKSEHMIKAMEAYIEDLDEIKEKSPEI 1262
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 592 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVETDLtRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQE 671
Cdd:TIGR01612 1263 ENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDI-REKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDI 1341
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 672 KTHL---------LQQHNAEK-DSLVRDHEREIENLEKQLRAANMEHENQIQEFK----------KRDSQVIA-DMEAQV 730
Cdd:TIGR01612 1342 NLYLneianiyniLKLNKIKKiIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKddinleecksKIESTLDDkDIDECI 1421
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 731 HKLREELIHV------------NSQRKQQLVELGL------------LREEEKQKAARDHETVVYKLKAESEKMKMelKR 786
Cdd:TIGR01612 1422 KKIKELKNHIlseesnidtyfkNADENNENVLLLFkniemadnksqhILKIKKDNATNDHDFNINELKEHIDKSKG--CK 1499
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 787 THAAETEVTLEKANSRLKQIEKEYTQKLAKSS---------QIIAELQTTISSLKEENSRLQLAAERRLQDvIQKFEDEK 857
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTELLNKYSalaiknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQK-IKEIKKEK 1578
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 858 KQL---IRDNDQAIKAL------QEELENRSNQVRCAEKKLQH--KELESQE-QITYIR---QEYETKFKGLMPASLRQE 922
Cdd:TIGR01612 1579 FRIeddAAKNDKSNKAAidiqlsLENFENKFLKISDIKKKINDclKETESIEkKISSFSidsQDTELKENGDNLNSLQEF 1658
|
810
....*....|.
gi 1796484850 923 LEdtisSLKSQ 933
Cdd:TIGR01612 1659 LE----SLKDQ 1665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-844 |
2.19e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 649 QLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAAnmehENQIQEFKKRDSQVIADMEA 728
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERR--IAALARRIRALEQELAAL----EAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 729 QVHKLREELIHVNSQRKQQLVELgLLREEEKQKAARD---HETVVYKLKAESEKMKMELKRTHAAETEVT---------- 795
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLAL-LLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEaeraeleall 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1796484850 796 --LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAER 844
Cdd:COG4942 181 aeLEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
302-860 |
2.37e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 302 KKKQNEMEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKEK----FDLQKRH 377
Cdd:TIGR00606 201 KVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNeikaLKSRKKQ 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 378 TENIQELLEDTNMRLNKMEGEYMAQTQSTNQ-MVKELESRVQQLTGEAENSNLQRQKLIQEKLELERiyQITCNELQEVK 456
Cdd:TIGR00606 281 MEKDNSELELKMEKVFQGTDEQLNDLYHNHQrTVREKERELVDCQRELEKLNKERRLLNQEKTELLV--EQGRLQLQADR 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 457 ARRNSLHKEKDHLTNDYEQNMKLFQTKYDADINlLKKEHALSSSKASGMIKELEQNICQLKQQLQESElqrkkqlrDQEN 536
Cdd:TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSERQ-IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQ--------EQAD 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 537 KFQMEKSHLKRTCEKKIHDLEselgKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADA---ALEEFKRQVELN 613
Cdd:TIGR00606 430 EIRDEKKGLGRTIELKKEILE----KKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAeknSLTETLKKEVKS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 614 SEKVYAEMKEQMEKVETDLTRSKslREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEK--DSLVRDHE 691
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEMEQLN--HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKqlEDWLHSKS 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 692 REIENLEKQLRAANMEHEnQIQEFKKRDSQVIADMEAQVHKLREELIHVNSQRKQQlVELGLLREE----EKQKAARDHE 767
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELA-SLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEE-SDLERLKEEieksSKQRAMLAGA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 768 TVVY-----KLKAESEKMKMELKRTHAAETEVT----------------LEKANSRLKQIEKEYTQKLAKSSQIIAELQT 826
Cdd:TIGR00606 662 TAVYsqfitQLTDENQSCCPVCQRVFQTEAELQefisdlqsklrlapdkLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
570 580 590
....*....|....*....|....*....|....
gi 1796484850 827 TISSLKEENSRLQlAAERRLQDVIQKFEDEKKQL 860
Cdd:TIGR00606 742 KEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLL 774
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
678-934 |
3.60e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 678 QHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELihvnSQRKQQLVELGLLREE 757
Cdd:COG5185 239 QDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 758 EKQKAARDHETVVYKLKAESEKM----KMELKRTHAAETEVtLEKANSRLKQIEKEYtqKLAKSSQIIAELQTTISSLKE 833
Cdd:COG5185 315 EEQLAAAEAEQELEESKRETETGiqnlTAEIEQGQESLTEN-LEAIKEEIENIVGEV--ELSKSSEELDSFKDTIESTKE 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 834 ENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQ---AIKALQEELENRSNQVRCAEKKLQHKELESQEqITYIRQEYETK 910
Cdd:COG5185 392 SLDEIPQNQRGYAQEILATLEDTLKAADRQIEElqrQIEQATSSNEEVSKLLNELISELNKVMREADE-ESQSRLEEAYD 470
|
250 260
....*....|....*....|....
gi 1796484850 911 FKGLMPASLRQELEDTISSLKSQV 934
Cdd:COG5185 471 EINRSVRSKKEDLNEELTQIESRV 494
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
254-847 |
3.77e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 254 EKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEElkilykkkqnemeetirKLEKKVQILIRDCQVIRETK 333
Cdd:TIGR00618 276 EAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQS-----------------KMRSRAKLLMKRAAHVKQQS 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 334 ENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKEKFDLQ--------KRHTENIQELLEDTNMRLNKMEGEYMAQTQS 405
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlqqqKTTLTQKLQSLCKELDILQREQATIDTRTSA 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 406 TNQMVKELESRVQQLTGEAENSNLQR-------QKLIQEKLELERIYQITCNELQEVKARRNSL------HKEKDHLTND 472
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCAaaitctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIHlqetrkKAVVLARLLE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 473 YEQNMKLFQTK---YDADINLLKKEHALSSSKASGM--IKELEQNICQLKQQLQeSELQRKKQLRDQENKFQMEKSHLKR 547
Cdd:TIGR00618 499 LQEEPCPLCGScihPNPARQDIDNPGPLTRRMQRGEqtYAQLETSEEDVYHQLT-SERKQRASLKEQMQEIQQSFSILTQ 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 548 TCEKKIHDLESeLGKEKEETQKKIHKLEEALKEKEEQLTRvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEK 627
Cdd:TIGR00618 578 CDNRSKEDIPN-LQNITVRLQDLTEKLSEAEDMLACEQHA--LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLT 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 628 VETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVEL------KLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQL 701
Cdd:TIGR00618 655 LTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQltywkeMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDL 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 702 RAANMEHENQIQEFKK-RDSQVIADMEAQVHKLREELIHVnsQRKQQLVEL-GLLREEEKQKAARDHETvvyklkaeseK 779
Cdd:TIGR00618 735 AAREDALNQSLKELMHqARTVLKARTEAHFNNNEEVTAAL--QTGAELSHLaAEIQFFNRLREEDTHLL----------K 802
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1796484850 780 MKMELKRTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQ 847
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
653-890 |
5.24e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 5.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 653 VRQRYEQ-QIVELKLEHEQEKthllqqhnaekdslVRDHEREIENLEKQLRAANMEHENQIQEFKKRdsqvIADMEAQVH 731
Cdd:PHA02562 176 IRELNQQiQTLDMKIDHIQQQ--------------IKTYNKNIEEQRKKNGENIARKQNKYDELVEE----AKTIKAEIE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 732 KLREELIHVNSQRKQQLVELGLLREEEKQKAArdhetvvyKLKAESEKMKMELKRTHA-------AETEVTLEKANSRLK 804
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALNKLNTAAAKIKS--------KIEQFQKVIKMYEKGGVCptctqqiSEGPDRITKIKDKLK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 805 QIEKEYTQ-------------KLAKSSQIIAELQTTISSLKEENSRLQLAAeRRLQDVIQKFEDEKKqlirDNDQAIKAL 871
Cdd:PHA02562 310 ELQHSLEKldtaideleeimdEFNEQSKKLLELKNKISTNKQSLITLVDKA-KKVKAAIEELQAEFV----DNAEELAKL 384
|
250
....*....|....*....
gi 1796484850 872 QEELENRSNQvrCAEKKLQ 890
Cdd:PHA02562 385 QDELDKIVKT--KSELVKE 401
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
413-737 |
7.23e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 7.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 413 LESRVQQLTGEAENSNLQ----RQKLIQEKLELERIYQITCNELqevKARRNSLHKE------KDHLTNDYEQNMKLFQT 482
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQktikREKKLRETEEVEFSLKAEVLIQ---KFGRSLKAKKrfsllkKETIYLQSAQRVELAER 882
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 483 K--------------YDADINLLKKEHALSSSKASGMIKELE---QNICQLKQQLQESELQ----RKKQLRDQENKFQME 541
Cdd:COG5022 883 QlqelkidvksisslKLVNLELESEIIELKKSLSSDLIENLEfktELIARLKKLLNNIDLEegpsIEYVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 542 KSHLKRTCEKKiHDLESELGKEKEETQKKIHKLEEALKEKEEQLtrvTEVQRLQAQQADAALEEFKRQVELNSEKVYAEM 621
Cdd:COG5022 963 ESKLKETSEEY-EDLLKKSTILVREGNKANSELKNFKKELAELS---KQYGALQESTKQLKELPVEVAELQSASKIISSE 1038
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 622 KEQmEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDH-----EREIEN 696
Cdd:COG5022 1039 STE-LSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRnlvkpANVLQF 1117
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1796484850 697 LEKQLRAANMEHenQIQEFKKRDSQVIADMEAQVHKLREEL 737
Cdd:COG5022 1118 IVAQMIKLNLLQ--EISKFLSQLVNTLEPVFQKLSVLQLEL 1156
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
238-935 |
9.05e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 9.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 238 RKSSSLHEDPLRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKILYKKKQNE---------- 307
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEearkaedark 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 308 MEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLnndwEKKLHNAVAEMEKEKFDLQKRHTENIQELLEd 387
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAE----EVRKAEELRKAEDARKAEAARKAEEERKAEE- 1216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 388 tnmrLNKMEGEYMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKD 467
Cdd:PTZ00121 1217 ----ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 468 HLTNDYEQNMKLFQTKYDAD----INLLKKEHALSSSKASGMIKELEQNICQLKQQLQESELQRKKQLRDQENKfqmEKS 543
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEeakkADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA---EAA 1369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 544 HLKRTCEKKihdlESELGKEKEETQKKIHKLEEALKEKEEQLTRV--TEVQRLQAQQADAALEEFKRQVELNSEKVYAEM 621
Cdd:PTZ00121 1370 EKKKEEAKK----KADAAKKKAEEKKKADEAKKKAEEDKKKADELkkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 622 KEQMEKVETDLTRSKSLREKqsKEFSWQLEEVRQRYEQ--QIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEK 699
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKK--AEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 700 QLRAANMEHENQIQEFKKrdsqviadmeAQVHKLREELIHVNSQRKQQLVElgllREEEKQKAARDHETV---------- 769
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKK----------AEEKKKADELKKAEELKKAEEKK----KAEEAKKAEEDKNMAlrkaeeakka 1589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 770 -------VYKLKAESEKMKMELKRTH-----AAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSlKEENSR 837
Cdd:PTZ00121 1590 eearieeVMKLYEEEKKMKAEEAKKAeeakiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK-AAEEAK 1668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 838 LQLAAERRLQDVIQKFEDEKK---QLIRDNDQAIKALQ-----EELENRSNQVRCAE-------KKLQHKELESQEQITY 902
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKKaaeALKKEAEEAKKAEElkkkeAEEKKKAEELKKAEeenkikaEEAKKEAEEDKKKAEE 1748
|
730 740 750
....*....|....*....|....*....|...
gi 1796484850 903 IRQEYETKFKGLMPASLRQELEDTISSLKSQVI 935
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
248-702 |
9.42e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 248 LRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKILYKKKQNEMEeTIRKLEKKVQILIRDCQ 327
Cdd:TIGR00606 714 TESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG-TIMPEEESAKVCLTDVT 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 328 VIRETKENQITELKKICEQSTESLNNDwekkLHNAVAEMEKEKFDLQKRHTENIQELLEdtnmrLNKMEGEYMAQTQSTN 407
Cdd:TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSD----LDRTVQQVNQEKQEKQHELDTVVSKIEL-----NRKLIQDQQEQIQHLK 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 408 QMVKELESRVQQLTgeaenSNLQRQKLIQEKLEleriyqitcNELQEVKARRNSLHKEKDHLTNDyEQNMKLFQTKYDAD 487
Cdd:TIGR00606 864 SKTNELKSEKLQIG-----TNLQRRQQFEEQLV---------ELSTEVQSLIREIKDAKEQDSPL-ETFLEKDQQEKEEL 928
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 488 INLLKKEHALSSSKASGMIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLKRtCEKKIHDLESELGKEKEE- 566
Cdd:TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEE-CEKHQEKINEDMRLMRQDi 1007
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 567 --------------TQKKIHKLEEALKEKEEQ-LTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVetd 631
Cdd:TIGR00606 1008 dtqkiqerwlqdnlTLRKRENELKEVEEELKQhLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI--- 1084
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1796484850 632 LTRSKSLREKqskefswQLEEVRQRYEQQIVELKLEHEQEKThLLQQHNAEKDSLVRDHEREIENLEKQLR 702
Cdd:TIGR00606 1085 KHFKKELREP-------QFRDAEEKYREMMIVMRTTELVNKD-LDIYYKTLDQAIMKFHSMKMEEINKIIR 1147
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
590-799 |
1.08e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 590 EVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKvetdltrsksLREKQSKEfswqLEEVRQRYEQQIVELKLEHE 669
Cdd:PRK00409 526 EELERELEQKAEEAEALLKEA----EKLKEELEEKKEK----------LQEEEDKL----LEEAEKEAQQAIKEAKKEAD 587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 670 QEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLRE--ELIHVNSQRKQQ 747
Cdd:PRK00409 588 EIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgEVLSIPDDKEAI 664
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 748 L--------VELGLLREEEKQKAARDHETVVYKLKAESEKMKMELKRTHAAETEVTLEKA 799
Cdd:PRK00409 665 VqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
303-646 |
1.22e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 303 KKQNEMEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHNAVAEMEKEKFDLQKRHTENIQ 382
Cdd:pfam02463 656 EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 383 ELLEDTNMRLNKMEGEYMAQTQSTNQMVKELESRVQQLTGEAEN-SNLQRQKLIQEKLELERIYQITCNELQEVKARRNS 461
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEErEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 462 LHKEKDHLTNDYEQNMKLFQTKYDADINLLKKEHALSSSKASGMIKELEQNIC--QLKQQLQESELQRKKQLRDQENKFQ 539
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELlqELLLKEEELEEQKLKDELESKEEKE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 540 MEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYA 619
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV 975
|
330 340
....*....|....*....|....*..
gi 1796484850 620 EMKEQMEKVETDLTRSKSLREKQSKEF 646
Cdd:pfam02463 976 NLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
237-735 |
1.23e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 237 LRKSSSLHEDPLRSRMHEKELDIKTKMIEAKCHEEKLKLQqkhdADVQKILERKNNEIEELKILYKKKQNEMEETIRKL- 315
Cdd:pfam05557 60 LEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQL----ADAREVISCLKNELSELRRQIQRAELELQSTNSELe 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 316 ----------------EKKVQILIRDCQVIREtKENQITELK-KICEQSTESLNNDWEKKLHNAVAEMEKEkfdlqkrht 378
Cdd:pfam05557 136 elqerldllkakaseaEQLRQNLEKQQSSLAE-AEQRIKELEfEIQSQEQDSEIVKNSKSELARIPELEKE--------- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 379 eniQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELEsRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKAR 458
Cdd:pfam05557 206 ---LERLREHNKHLNENIENKLLLKEEVEDLKRKLE-REEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 459 RNSLHKEKDHLTNDYEQNMKLFQTKYDADINLLKKEHALSSSKAsgmiKELEQNICQLKQQLQESELQRKKQLRDQENKF 538
Cdd:pfam05557 282 SRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLK----KIEDLNKKLKRHKALVRRLQRRVLLLTKERDG 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 539 --QMEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELN--- 613
Cdd:pfam05557 358 yrAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLAdps 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 614 -SEKVYAEMKEQMEKVEtdLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVEL-------KLEHEQEKTHLLQQHNAEKDS 685
Cdd:pfam05557 438 ySKEEVDSLRRKLETLE--LERQRLREQKNELEMELERRCLQGDYDPKKTKVlhlsmnpAAEAYQQRKNQLEKLQAEIER 515
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1796484850 686 LVRDHEREIENLEKQLRAANMEHENQIQEFKKRDSQViADMEAQVHKLRE 735
Cdd:pfam05557 516 LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKEL-ESAELKNQRLKE 564
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-735 |
1.33e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 451 ELQEVKARRNSLHKEKDHLTNdyeqnmklfqtkydadinlLKKEHALSSSKASGMIKELEQNICQLKQQlQESELQRKKQ 530
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIEN-------------------RLDELSQELSDASRKIGEIEKEIEQLEQE-EEKLKERLEE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 531 LRDQENKFQMEKSHLKR---TCEKKIHDLESELGKEKEETQK-KIHKLEEALKEKEEQLTRV-TEVQRLQAQQADAALEE 605
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSelkELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLeEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 606 FKRQVELNS-EKVYAEMKEQMEkvetDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKlEHEQEKTHLlqqhnaekd 684
Cdd:TIGR02169 822 NRLTLEKEYlEKEIQELQEQRI----DLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLGDL--------- 887
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1796484850 685 slvrdhEREIENLEKQLRAANM---EHENQIQEFKKRDSQVIADMEAQVHKLRE 735
Cdd:TIGR02169 888 ------KKERDELEAQLRELERkieELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
556-891 |
1.68e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 556 LESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVY-------AEMKEQMEKV 628
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYllyldylKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 629 ETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEH 708
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 709 ENQIQEFKKRDSQVIADMEAQVHKLREELIHVNSQRKQQlvelgllrEEEKQKAARDHETVVYKLKAESEKMKMELKRTH 788
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL--------EKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 789 AAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLIRDNDQAI 868
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
330 340
....*....|....*....|...
gi 1796484850 869 KALQEELENRSNQVRCAEKKLQH 891
Cdd:pfam02463 475 KETQLVKLQEQLELLLSRQKLEE 497
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
451-839 |
1.78e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 42.24 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 451 ELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYDADINLLKKEHALSSSKASGMIKELEQNICQLKQqLQESELQRKKQ 530
Cdd:pfam15818 36 ETQELKWQKETLQNQKETLAKQHKEAMAVFKKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKA-LQVSKYSLQKK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 531 LRDQENKFQMeksHLKrtcekkihdleselgkEKEETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQV 610
Cdd:pfam15818 115 VSEMEQKLQL---HLL----------------AKEDHHKQLNEIEKYYATITGQFGLVKENHGKLEQNVQEAIQLNKRLS 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 611 ELN--SEKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEHE------QEKTHLLQQHNAE 682
Cdd:pfam15818 176 ALNkkQESEICSLKKELKKVTSDLIKSKVTCQYKMGEENINLTIKEQKFQELQERLNMELElnkkinEEITHIQEEKQDI 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 683 KDSLvrdheREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAQVHKLREElihvnsqrKQQLVELgllrEEEKQKA 762
Cdd:pfam15818 256 IISF-----QHMQQLLQQQTQANTEMEAELKALKENNQTLERDNELQREKVKEN--------EEKFLNL----QNEHEKA 318
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1796484850 763 ARDHETVVYKLKAESEKMKMELkrTHAAETEVTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSRLQ 839
Cdd:pfam15818 319 LGTWKKHVEELNGEINEIKNEL--SSLKETHIKLQEHYNKLCNQKKFEEDKKFQNVPEVNNENSEMSTEKSENLIIQ 393
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
592-747 |
2.44e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 592 QRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKV-ETDLTRSKSLREKQSKEFswqlEEVRQRYEQqivelkLEHEQ 670
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREE----ERLVQKEEQ------LDARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 671 EKTHLLQQHNAEKDSLVRDHEREIENLEKQL-----RAANMEHENQIQEFKKRDSQVIADMEAQVHKLREELIHVNSQRK 745
Cdd:PRK12705 98 EKLDNLENQLEEREKALSARELELEELEKQLdnelyRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
..
gi 1796484850 746 QQ 747
Cdd:PRK12705 178 AQ 179
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
531-898 |
2.65e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 531 LRDQENKFQMEKSHLKRTCEKKIHDLESELGKEKEETQKKIHKLeealkekeeqltrvtEVQRLQAQQ----ADAALEEf 606
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERY---------------EEQREQAREtrdeADEVLEE- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 607 krqvelnsekvYAEMKEQMEKVET---DLTRSKSLREKQSKEFSWQLEEVRQRYEqqivelklEHEQEKTHLLQQHNAEK 683
Cdd:PRK02224 246 -----------HEERREELETLEAeieDLRETIAETEREREELAEEVRDLRERLE--------ELEEERDDLLAEAGLDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 684 --DSLVRDHEREIENLEKQLRAANMEHENQIQEFKK---RDSQVIADMEAQVHKLRE-------ELIHVNSQRKQQLVEL 751
Cdd:PRK02224 307 adAEAVEARREELEDRDEELRDRLEECRVAAQAHNEeaeSLREDADDLEERAEELREeaaelesELEEAREAVEDRREEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 752 GLLREE--EKQKAARDHETVVYKLKAESEKMKMELKRTHA--AETEVTLEKANSRLKQIEK------------------- 808
Cdd:PRK02224 387 EELEEEieELRERFGDAPVDLGNAEDFLEELREERDELREreAELEATLRTARERVEEAEAlleagkcpecgqpvegsph 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 809 -----EYTQKLAKSSQIIAELQTTISSLKEENSRLQLA--AERRLQDVIQKFE------DEKKQLIRDNDQAIKALQEEL 875
Cdd:PRK02224 467 vetieEDRERVEELEAELEDLEEEVEEVEERLERAEDLveAEDRIERLEERREdleeliAERRETIEEKRERAEELRERA 546
|
410 420
....*....|....*....|...
gi 1796484850 876 ENRSNQVRCAEKKLQHKELESQE 898
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEE 569
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
364-908 |
2.85e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 364 AEMEKEKFDLQKRHTEnIQELLEDTNMRLNKMEgeymAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELER 443
Cdd:pfam01576 57 AEAEEMRARLAARKQE-LEEILHELESRLEEEE----ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 444 IYQITCNELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYDADINLLKKEHalsssKASGMIKELEQNICQLKQQLQES 523
Cdd:pfam01576 132 KIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKN-----KHEAMISDLEERLKKEEKGRQEL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 524 ELQRKK------QLRDQENKFQMEKSHLKRTCEKKIHDLESELGKEKEETQKK--IHKLEEALKEKEEQLTRVTEVQRLQ 595
Cdd:pfam01576 207 EKAKRKlegestDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKnnALKKIRELEAQISELQEDLESERAA 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 596 AQQADAA-------LEEFKRQVElNSEKVYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVRQRYEQQIVELKLEH 668
Cdd:pfam01576 287 RNKAEKQrrdlgeeLEALKTELE-DTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 669 EQEKTHllqQHNAEKDSLVRDHER-EIENLEKQLRAANMEHEN-------QIQEFKKRDSQ---VIADMEAQVHKLREEL 737
Cdd:pfam01576 366 EQAKRN---KANLEKAKQALESENaELQAELRTLQQAKQDSEHkrkklegQLQELQARLSEserQRAELAEKLSKLQSEL 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 738 IHVNSqrkqqlvelgLLREEEKQKAardhetvvyKLKAESEKMKMELKRTHAAETEVTLEKAN--SRLKQIEKEytqkla 815
Cdd:pfam01576 443 ESVSS----------LLNEAEGKNI---------KLSKDVSSLESQLQDTQELLQEETRQKLNlsTRLRQLEDE------ 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 816 kssqiiaelQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQLIRDN------DQAIKALQEELENRSNQVrcAEKKL 889
Cdd:pfam01576 498 ---------RNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAgtlealEEGKKRLQRELEALTQQL--EEKAA 566
|
570
....*....|....*....
gi 1796484850 890 QHKELESQEqiTYIRQEYE 908
Cdd:pfam01576 567 AYDKLEKTK--NRLQQELD 583
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
248-470 |
4.15e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 248 LRSRMHEKELDIKTKMIEAKCHEEKLKLQQKHDADVQKILERKNNEIEELKilykKKQNEMEETIRKLEKKVQILirdcQ 327
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA----AEIEELEELIEELESELEAL----L 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 328 VIRETKENQITELKKICEQSTESLNnDWEKKLHNAVAEMEKekfdLQKRHTEnIQELLEDTNMRLNKMEGEYMAQTQSTN 407
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELR-ELESKRSELRRELEE----LREKLAQ-LELRLEGLEVRIDNLQERLSEEYSLTL 953
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1796484850 408 QMVKELESRVQQLTGEAEnsnlQRQKLIQEKL-ELERIYQITCNELQEVKARRNSLHKEKDHLT 470
Cdd:TIGR02168 954 EEAEALENKIEDDEEEAR----RRLKRLENKIkELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
410-857 |
4.73e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 410 VKELESRVQQLTGEAEnsnlQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYE-----QNMKLFQTKY 484
Cdd:COG4717 73 LKELEEELKEAEEKEE----EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElealeAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 485 DAdinLLKKEHALSSSKASgmIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLkrtcEKKIHDLESELgkek 564
Cdd:COG4717 149 EE---LEERLEELRELEEE--LEELEAELAELQEELEELLEQLSLATEEELQDLAEELEEL----QQRLAELEEEL---- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 565 EETQKKIHKLEEALKEKEEQLTRVTEVQRLQAQQAD----------AALEEFKRQVELNSEKVYAEMKEQMEKVETDLTR 634
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 635 SKSLREKQSKEFS--WQLEEVRQR-YEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEHENQ 711
Cdd:COG4717 296 EKASLGKEAEELQalPALEELEEEeLEELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 712 iQEFKKRDSQVIADMEAQVHKLRE--ELIHVNSQRKQQLVELGLLREEEKQKAARDhetvvyKLKAESEKMKMELKRTHA 789
Cdd:COG4717 374 -ALLAEAGVEDEEELRAALEQAEEyqELKEELEELEEQLEELLGELEELLEALDEE------ELEEELEELEEELEELEE 446
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 790 AETEVTLEKA--NSRLKQIEKEytQKLAKSSQIIAELQTTISSLKEENSRLQLAAErRLQDVIQKFEDEK 857
Cdd:COG4717 447 ELEELREELAelEAELEQLEED--GELAELLQELEELKAELRELAEEWAALKLALE-LLEEAREEYREER 513
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
415-906 |
4.89e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.66 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 415 SRVQQLTGEAENSNLQRQKLIQEKLELERIYQITCNELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKydadiNLLKKE 494
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-----NRYESE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 495 HALSSSKASgMIKELEQNICQLKQQLQESELQRKKQLRDQENKFQMEKSHLKrTCEKKIHDLESELGKeKEETQKKIHKL 574
Cdd:PRK01156 258 IKTAESDLS-MELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIE-NKKQILSNIDAEINK-YHAIIKKLSVL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 575 EEALKEKEEQLTRVTEvqrLQAQQADAALEEFKRQVELNSekvYAEMKEQMEKVETDLTRSKSLREKQSKEFSWQLEEVR 654
Cdd:PRK01156 335 QKDYNDYIKKKSRYDD---LNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 655 QRYEQQIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKRDSQVIADME 727
Cdd:PRK01156 409 KELNEINVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINHYNEKKSRLE 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 728 AQVHKLREELIHVNSQRKQQLVELGLLREEEkqkaARDHETVVYKLK-AESEKMKMELKRTHAAETEVTLEKANSRLKQI 806
Cdd:PRK01156 483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEE----INKSINEYNKIEsARADLEDIKIKINELKDKHDKYEEIKNRYKSL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 807 -----EKEYTQKLAKSSQIIAELQTTISSLKEENSRLQLAAERRLQDVIQKFEDEKKQlirdNDQAIKALQEELENRSNQ 881
Cdd:PRK01156 559 kledlDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEANNLNNK 634
|
490 500
....*....|....*....|....*.
gi 1796484850 882 VRCA-EKKLQHKELesQEQITYIRQE 906
Cdd:PRK01156 635 YNEIqENKILIEKL--RGKIDNYKKQ 658
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
594-845 |
6.01e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 594 LQAQQADAALEEFKRQVEL------NSEKVYAEMKEQMEKVET---DLTRSKSLREKQSKEFSWQLEEV--------RQR 656
Cdd:COG3096 413 IQYQQAVQALEKARALCGLpdltpeNAEDYLAAFRAKEQQATEevlELEQKLSVADAARRQFEKAYELVckiageveRSQ 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 657 YEQQIVELKLEHEQekthllQQHNAEKDSLVRDHEREIENLEKQLRAAnmehENQIQEFKKRDSQVIADmeaqvhklREE 736
Cdd:COG3096 493 AWQTARELLRRYRS------QQALAQRLQQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEE 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 737 LIHVNSQRKQQLVELGLLREEEKQKAARdhetvvykLKAESEKMKMELKRThaAETEVTLEKANSRLKQIEKEYTQKLAK 816
Cdd:COG3096 555 LEELLAELEAQLEELEEQAAEAVEQRSE--------LRQQLEQLRARIKEL--AARAPAWLAAQDALERLREQSGEALAD 624
|
250 260 270
....*....|....*....|....*....|
gi 1796484850 817 SSQIIAELQTTISSLKE-ENSRLQLAAERR 845
Cdd:COG3096 625 SQEVTAAMQQLLEREREaTVERDELAARKQ 654
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-551 |
7.62e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 244 HEDPLRSRMHEKELDIKTKMIEA---KCHEEKLKLQQKHDADVQKILERK-NNEIEELKILYKKKQnEMEETIRKLEKKV 319
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIeqlEQEEEKLKERLEELEEDLSSLEQEiENVKSELKELEARIE-ELEEDLHKLEEAL 781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 320 -QILIRDCQVIRETKENQITELKKIcEQSTESLNNDWEKKLHNavAEMEKEKFDLQKRHTENIQELLEDTNMRLNKMEGE 398
Cdd:TIGR02169 782 nDLEARLSHSRIPEIQAELSKLEEE-VSRIEARLREIEQKLNR--LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 399 YMAQTQSTNQMVKELESRVQQLTGEAENSNLQRQKLIQEKLELERiyqitcnELQEVKARRNSLhKEKDHLTNDYEQNMK 478
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER-------KIEELEAQIEKK-RKRLSELKAKLEALE 930
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 479 LFQTKYDADINLLKKEHA--LSSSKASGMIKELEQNICQLKQ------QLQESELQRKKQLRDQENKFQMEKSHLKRTCE 550
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEeeLSLEDVQAELQRVEEEIRALEPvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
|
.
gi 1796484850 551 K 551
Cdd:TIGR02169 1011 E 1011
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
380-747 |
9.12e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 380 NIQELLEDTNMRLNKMEGEYMAQTQSTNQMVKELESRVQQltGEAENSNLQRQKLiqEKLELERIYQITCNELQEVKARR 459
Cdd:pfam17380 241 ESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQH--QKAVSERQQQEKF--EKMEQERLRQEKEEKAREVERRR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 460 NSLHKEKDHLTNDYEQNMKLFQTKYDAdinlLKKEHALSSSKASGMIKELEQnicqLKQQLQESELQRKKQLRDQENKFQ 539
Cdd:pfam17380 317 KLEEAEKARQAEMDRQAAIYAEQERMA----MERERELERIRQEERKRELER----IRQEEIAMEISRMRELERLQMERQ 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 540 MEKSHLKRTCE--KKIHDLESELGKEKEETQKKIHKLEEALKEKEEQLTRVTEVQR--------LQAQQADAALEEFKRQ 609
Cdd:pfam17380 389 QKNERVRQELEaaRKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremervrLEEQERQQQVERLRQQ 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 610 VELNSEKVYAEMKEQMEKVETDLTRSKSLREkqskefswQLEEVRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRD 689
Cdd:pfam17380 469 EEERKRKKLELEKEKRDRKRAEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYE 531
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1796484850 690 HEREIENLEKQLRAANMEHENQIQEFKKRDSQVIADMEAqVHKLREELIHVNSQRKQQ 747
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
690-933 |
9.66e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.91 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 690 HEREIENLEKQLRAANMEHenqIQEFKKRDSQviadmeAQVHKLREELIHVnsqrKQQLVELGLLREEEKqkaardhetv 769
Cdd:PRK05771 14 LKSYKDEVLEALHELGVVH---IEDLKEELSN------ERLRKLRSLLTKL----SEALDKLRSYLPKLN---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 770 vyklKAESEKMKMELKrthaaETEVTLEKANSRLKQIEKEYTQKLAKssqiIAELQTTISSLKEENSRLQ--------LA 841
Cdd:PRK05771 71 ----PLREEKKKVSVK-----SLEELIKDVEEELEKIEKEIKELEEE----ISELENEIKELEQEIERLEpwgnfdldLS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 842 AERRLQDVIQKF----EDEKKQLIRDNDQAIKALQEELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKFKglmPA 917
Cdd:PRK05771 138 LLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGT---PS 214
|
250
....*....|....*.
gi 1796484850 918 SLRQELEDTISSLKSQ 933
Cdd:PRK05771 215 ELIREIKEELEEIEKE 230
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
282-858 |
9.90e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 9.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 282 DVQKILERKNNEIEELkilyKKKQNEMEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKLHN 361
Cdd:PRK01156 187 YLEEKLKSSNLELENI----KKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 362 AVAEMEKEKFDLQKRHTENIQELLEDTNMRLNKMEGEYM---AQTQSTNQMVKELESRVQQLTG--------EAENSNLQ 430
Cdd:PRK01156 263 SDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFkykNDIENKKQILSNIDAEINKYHAiikklsvlQKDYNDYI 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 431 RQKLIQEKLELERI--------YQITCNELQEVKARRNSLHKEKDHLTNDYEQNMKLFQTKYDAdINLLKKEHALSSSKA 502
Cdd:PRK01156 343 KKKSRYDDLNNQILelegyemdYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDA-IKKELNEINVKLQDI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 503 SGMIKELEQNICQLKQQLQesELQRKKQLRDQENKFQMEKSHLKrtcEKKIHDLESELGKEKEETQKKIHKLEEALKEKE 582
Cdd:PRK01156 422 SSKVSSLNQRIRALRENLD--ELSRNMEMLNGQSVCPVCGTTLG---EEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 583 EqltrvtevQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVETDLTRsksLREKQSKefswqLEEVRQRYEQqiv 662
Cdd:PRK01156 497 E--------KIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINE---LKDKHDK-----YEEIKNRYKS--- 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 663 eLKLEHEQEKTHLLQQHNAEKDSLvrdherEIENLEKQLRaanmEHENQIQEFKKRDSQVIADM-------EAQVHKLRE 735
Cdd:PRK01156 558 -LKLEDLDSKRTSWLNALAVISLI------DIETNRSRSN----EIKKQLNDLESRLQEIEIGFpddksyiDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796484850 736 ELIHVNSQrKQQLVELGLLREEEKQKaardhetvVYKLKAESEKMKMELKRThaAETEVTLEKANSRLKQIEKeytqKLA 815
Cdd:PRK01156 627 EANNLNNK-YNEIQENKILIEKLRGK--------IDNYKKQIAEIDSIIPDL--KEITSRINDIEDNLKKSRK----ALD 691
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1796484850 816 KSSQIIAELQTTISSLKEENSRLqlaaERRLQDVIQKFEDEKK 858
Cdd:PRK01156 692 DAKANRARLESTIEILRTRINEL----SDRINDINETLESMKK 730
|
|
| |
