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Conserved domains on  [gi|18138249|ref|NP_542468|]
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cytochrome b (mitochondrion) [Lepidosiren paradoxa]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 683.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASnLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00131   1 MAS-LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00131  80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 683.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASnLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00131   1 MAS-LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00131  80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-360 6.04e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 365.27  E-value: 6.04e-125
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  12 LKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  92 FICLYIHAARGLYYGSYlfKE----TWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWG 167
Cdd:COG1290 100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249 168 GFSVDNATLTRFFTFH-FLLPFIISAMTALHFLFLHETGSNNPTG----MNSNLDKITFHPYFSFKDLMGFTILMLLLII 242
Cdd:COG1290 178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249 243 LSLFSPNLlsDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:COG1290 258 LAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 18138249 321 ISQLMFWLLVSTMLILTWIGGQPVehPYIQIGQIASTIYF 360
Cdd:COG1290 336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.76e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 270.39  E-value: 1.76e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  10 PLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  90 MFFICLYIHAARGLYYGSY--LFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 18138249 168 GFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 6.95e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 6.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    19 LIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMFFICLYIH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    99 AARGLYYG--SYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 18138249   177 TRFFTFHFLLPFIISAMTALHFLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 4.14e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 4.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAY-RPISQLMFwlLVSTMLILt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 18138249   338 WIG 340
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 683.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASnLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00131   1 MAS-LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00131  80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 683.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
CYTB MTH00074
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 667.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
CYTB MTH00100
cytochrome b; Provisional
 3-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 651.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    3 SNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRS 82
Cdd:MTH00100   2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   83 IHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLV 162
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  163 QWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLII 242
Cdd:MTH00100 162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  243 LSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPIS 322
Cdd:MTH00100 242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 18138249  323 QLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00100 322 QCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00191
cytochrome b; Provisional
 5-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 649.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    5 LRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   85 ANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  165 VWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  245 LFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPISQL 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 18138249  325 MFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFM 361
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFF 357
CYTB MTH00156
cytochrome b; Provisional
 12-361 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 620.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   12 LKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   92 FICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  172 DNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILSLFSPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  252 SDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPISQLMFWLLVS 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|
gi 18138249  332 TMLILTWIGGQPVEHPYIQIGQIASTIYFM 361
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFL 350
CYTB MTH00145
cytochrome b; Provisional
 1-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 607.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFM 361
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFL 361
CYTB MTH00034
cytochrome b; Validated
 5-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 602.85  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    5 LRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   85 ANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  165 VWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILS 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  245 LFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPISQL 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 18138249  325 MFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-361 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 563.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFM 361
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00022
cytochrome b; Validated
 5-378 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 506.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    5 LRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   85 ANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  165 VWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILS 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  245 LFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPISQL 324
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 18138249  325 MFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 1-378 1.79e-180

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 505.78  E-value: 1.79e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYFMLFLALLPLTALLENKLL 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
CYTB MTH00224
cytochrome b; Provisional
 1-360 5.00e-180

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 504.84  E-value: 5.00e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    1 MASNLRKTHPLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLL 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   81 RSIHANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDM 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  161 LVQWVWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  241 IILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 18138249  321 ISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIASTIYF 360
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF 360
CYTB MTH00033
cytochrome b; Provisional
 5-360 6.46e-133

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 385.45  E-value: 6.46e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    5 LRKTHpLLKILNDsLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIH 84
Cdd:MTH00033   3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   85 ANGASMFFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQW 164
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  165 VWGGFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILS 244
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  245 LFS--PNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPIS 322
Cdd:MTH00033 241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 18138249  323 QLMFWLLVSTMLILTWIGGQPV-EHPYIQIGQIASTIYF 360
Cdd:MTH00033 321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-360 6.04e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 365.27  E-value: 6.04e-125
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  12 LKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  92 FICLYIHAARGLYYGSYlfKE----TWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWG 167
Cdd:COG1290 100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249 168 GFSVDNATLTRFFTFH-FLLPFIISAMTALHFLFLHETGSNNPTG----MNSNLDKITFHPYFSFKDLMGFTILMLLLII 242
Cdd:COG1290 178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249 243 LSLFSPNLlsDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAFSILILFLMPILHQAKQRTLAYRP 320
Cdd:COG1290 258 LAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 18138249 321 ISQLMFWLLVSTMLILTWIGGQPVehPYIQIGQIASTIYF 360
Cdd:COG1290 336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 13-361 7.67e-122

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 356.17  E-value: 7.67e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   13 KILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   93 ICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFSVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  173 NATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTiLMLLLIILSLFSPNLLS 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  253 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILhqaKQRTLAYRPISQLMFWLLVST 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                        330       340
                 ....*....|....*....|....*....
gi 18138249  333 MLILTWIGGQPVEHPYIQIGQIASTIYFM 361
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFF 345
CYTB MTH00046
cytochrome b; Validated
 11-358 1.80e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 278.79  E-value: 1.80e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   11 LLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASM 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   91 FFICLYIHAARGLYYGSYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFS 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  171 VDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSNNPTGMNSNL-DKITFHPYFSFKDLMGFTILMLLLIILSLFSPN 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  250 LLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAFSILILFLMPilhqAKQRTLAYRPISQLMFWLL 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*....
gi 18138249  330 VSTMLILTWIGGQPVEHPYIQIGQIASTI 358
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.76e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 270.39  E-value: 1.76e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  10 PLLKILNDSLIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  90 MFFICLYIHAARGLYYGSY--LFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 18138249 168 GFSVDNATLTRFFTFHFLLPFIISAMTALHFLFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 6.95e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 6.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    19 LIDLPSPINISAWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMFFICLYIH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    99 AARGLYYG--SYLFKETWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 18138249   177 TRFFTFHFLLPFIISAMTALHFLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-355 3.26e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.82  E-value: 3.26e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249 208 NPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILSLFSPNLLSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18138249 288 KLGGVLALAFSILILFLMPILHQAKQRTlAYRPISQLMFWLLVSTMLILTWIGGQPVEHPYIQIGQIA 355
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 2.67e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 2.67e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAYRPISQLMFWLLVSTMLILTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 18138249   339 IGGQPVEHPYIQIGQIASTIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.27e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 150.85  E-value: 2.27e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249    89 SMFFICLYIHAARGLYYGSYLFKE--TWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   167 GGFSVDNATLTRFFTFHF-LLPFIISAMTALHFLFLHETGSNNPTGMNSNLDKITFHPYFSFKDLMGFTILMLLLIILSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 18138249   246 FSPNLLSDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-209 4.58e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.38  E-value: 4.58e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   34 FGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMFFICLYIHAARGLYYGSYLFKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  113 -TWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFSVDNATLTRFFTFH-FLLPFII 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 18138249  191 SAMTALHFLFLHETGSNNP 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 22-209 2.05e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 120.98  E-value: 2.05e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   22 LPSPINIsaWWNFGSLLGLCLMVQIFTGLFLAMHFTADLSMAFSSIAHITRDVNYGWLLRSIHANGASMFFICLYIHAAR 101
Cdd:CHL00070  26 VPPHVNI--FYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  102 GLYYGSylFKE----TWNIGVMLLLLVMVTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGDMLVQWVWGGFSVDNATLT 177
Cdd:CHL00070 104 VYLTGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLT 181

                        170       180       190
                 ....*....|....*....|....*....|...
gi 18138249  178 RFFTFH-FLLPFIISAMTALHFLFLHETGSNNP 209
Cdd:CHL00070 182 RFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-340 2.46e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.65  E-value: 2.46e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQA-KQRTLAYRPISQLMFwlLVSTMLILt 337
Cdd:COG5679  66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVnKFQNPFRRPVATAVF--LFGTLVTL- 142


                ...
gi 18138249 338 WIG 340
Cdd:COG5679 143 WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 259-340 5.09e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.70  E-value: 5.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249  259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQA-KQRTLAYRPISQLMFwlLVSTmLILT 337
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVnKFQNPFRRPVATTVF--LIGT-AVAL 141


                 ...
gi 18138249  338 WIG 340
Cdd:CHL00058 142 WLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 4.14e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 4.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138249   259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILFLMPILHQAKQRTLAY-RPISQLMFwlLVSTMLILt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 18138249   338 WIG 340
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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