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Conserved domains on  [gi|1830359765|ref|NP_001366606|]
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nuclear RNA export factor 7 isoform 2 [Mus musculus]

Protein Classification

Tap-RNA_bind and UBA_TAP-C domain-containing protein( domain architecture ID 11182047)

protein containing domains Tap-RNA_bind, NTF2_like, and UBA_TAP-C

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tap-RNA_bind pfam09162
Tap, RNA-binding; Members of this family adopt a structure consisting of an alpha+beta ...
 112-191 1.80e-44

Tap, RNA-binding; Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element.


:

Pssm-ID: 462696  Cd Length: 80  Bit Score: 152.71  E-value: 1.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 112 WFKVTVPCGRKYDKTQLMNSIHSLCSVPFTPVDFHCDKHRIQFFVPDFRIASALKDISYKIHNEYFQKIPIFVNPSVAPY 191
Cdd:pfam09162   1 WFKVTIPYGKKYDKKWLLNSIQSLCSVPFTPVDFHYEKNRAVFFVEDASTASALKKVSRKITDEDGRKISIFVNPSAPPY 80
TAP_C smart00804
C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF ...
 548-609 2.57e-24

C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.


:

Pssm-ID: 197882  Cd Length: 63  Bit Score: 96.22  E-value: 2.57e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1830359765  548 SNFKLVLSQEQQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFFK 609
Cdd:smart00804   2 ASPKPTLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPEAFA 63
LRR super family cl34836
Leucine-rich repeat (LRR) protein [Transcription];
256-345 4.77e-07

Leucine-rich repeat (LRR) protein [Transcription];


The actual alignment was detected with superfamily member COG4886:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 52.63  E-value: 4.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 256 NFPKLLSLNLSSNklfQLDSLIDVVKKAPQLKILNLSKNMLRTV-WELEKMKglKLEQLWLEGNPLcSTFPDrssyirav 334
Cdd:COG4886   180 NLTNLKELDLSNN---QITDLPEPLGNLTNLEELDLSGNQLTDLpEPLANLT--NLETLDLSNNQL-TDLPE-------- 245

                          90
                  ....*....|.
gi 1830359765 335 LECFPELSYLD 345
Cdd:COG4886   246 LGNLTNLEELD 256
NTF2_like super family cl09109
Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 ...
 383-529 5.69e-07

Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea and eukaryotes.


The actual alignment was detected with superfamily member cd00780:

Pssm-ID: 471850  Cd Length: 119  Bit Score: 48.43  E-value: 5.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 383 FLREYYLMYDsEERQGLLNIYHDQACFSLtipfnpndpdlnsmyvyfkdeNDMKnfkefhiqrqlLKYTKQDIVECL--R 460
Cdd:cd00780     9 FVQQYYSIFD-NNREGLHRLYGDTSMLSR---------------------EGMK-----------QVTGRDAIVEKLssL 55

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1830359765 461 GFPQTLHAFSSfqVNICFQMETMLCFSVCGLFKEEGTPkecVRAFMRIFIALLGSSNMYIVNDQLFVRN 529
Cdd:cd00780    56 PFQKTKHKITT--VDSQPTPSGGVIVMVTGSLKLDEQP---PRKFSQTFVLAPQNGGYFVLNDIFRFVD 119
 
Name Accession Description Interval E-value
Tap-RNA_bind pfam09162
Tap, RNA-binding; Members of this family adopt a structure consisting of an alpha+beta ...
 112-191 1.80e-44

Tap, RNA-binding; Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element.


Pssm-ID: 462696  Cd Length: 80  Bit Score: 152.71  E-value: 1.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 112 WFKVTVPCGRKYDKTQLMNSIHSLCSVPFTPVDFHCDKHRIQFFVPDFRIASALKDISYKIHNEYFQKIPIFVNPSVAPY 191
Cdd:pfam09162   1 WFKVTIPYGKKYDKKWLLNSIQSLCSVPFTPVDFHYEKNRAVFFVEDASTASALKKVSRKITDEDGRKISIFVNPSAPPY 80
TAP_C smart00804
C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF ...
 548-609 2.57e-24

C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.


Pssm-ID: 197882  Cd Length: 63  Bit Score: 96.22  E-value: 2.57e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1830359765  548 SNFKLVLSQEQQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFFK 609
Cdd:smart00804   2 ASPKPTLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPEAFA 63
UBA_TAP-C cd14342
UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF ...
 558-608 4.76e-21

UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF family of mRNA nuclear export factors including vertebrate NXF1 (also called tip-associated protein or mRNA export factor TAP), NXF2 (also called cancer/testis antigen CT39 or TAP-like protein TAPL-2), Caenorhabditis elegans NXF1 (ceNXF1), Saccharomyces cerevisiae mRNA nuclear export factor Mex67p and similar proteins. NXF proteins can stimulate nuclear export of mRNAs and facilitate the export of unspliced viral mRNA containing the constitutive transport element. It is a multi-domain protein with a nuclear localization sequence (NLS), a non-canonical mRNA-binding domain, and four leucine-rich repeats (LLR) at the N-terminal region. Its C-terminal part contains a NTF2-like domain and a ubiquitin-associated (UBA)-like domain, joined by flexible Pro-rich linker. Caenorhabditis elegans NXF1 are essential for the nuclear export of poly(A)+mRNA. In budding yeast, Mex67p binds mRNAs through its adaptor Yra1/REF. It also interacts directly with Nab2, an essential shuttling mRNA-binding protein required for export. Moreover, Mex67p associates with both nuclear pore protein (nucleoporin) FG repeats and Hpr1, a component of the TREX/THO complex linking transcription and export.


Pssm-ID: 270527  Cd Length: 51  Bit Score: 86.48  E-value: 4.76e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1830359765 558 QQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFF 608
Cdd:cd14342     1 QQQMVQQLSAQTGMNLEWSQKCLEDNGWDYEKALANFEELKAQGKIPPEAF 51
TAP_C pfam03943
TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling ...
 561-608 6.38e-21

TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling. The structure of the C-terminal domain is composed of four helices. The structure is related to the UBA domain.


Pssm-ID: 461102  Cd Length: 49  Bit Score: 86.05  E-value: 6.38e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1830359765 561 MVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFF 608
Cdd:pfam03943   2 MVQQFSQQTGMNLEWSEKCLEQNNWDYERALQNFTELKAQGKIPPEAF 49
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
256-345 4.77e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 52.63  E-value: 4.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 256 NFPKLLSLNLSSNklfQLDSLIDVVKKAPQLKILNLSKNMLRTV-WELEKMKglKLEQLWLEGNPLcSTFPDrssyirav 334
Cdd:COG4886   180 NLTNLKELDLSNN---QITDLPEPLGNLTNLEELDLSGNQLTDLpEPLANLT--NLETLDLSNNQL-TDLPE-------- 245

                          90
                  ....*....|.
gi 1830359765 335 LECFPELSYLD 345
Cdd:COG4886   246 LGNLTNLEELD 256
NTF2 cd00780
Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of ...
 383-529 5.69e-07

Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.


Pssm-ID: 238403  Cd Length: 119  Bit Score: 48.43  E-value: 5.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 383 FLREYYLMYDsEERQGLLNIYHDQACFSLtipfnpndpdlnsmyvyfkdeNDMKnfkefhiqrqlLKYTKQDIVECL--R 460
Cdd:cd00780     9 FVQQYYSIFD-NNREGLHRLYGDTSMLSR---------------------EGMK-----------QVTGRDAIVEKLssL 55

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1830359765 461 GFPQTLHAFSSfqVNICFQMETMLCFSVCGLFKEEGTPkecVRAFMRIFIALLGSSNMYIVNDQLFVRN 529
Cdd:cd00780    56 PFQKTKHKITT--VDSQPTPSGGVIVMVTGSLKLDEQP---PRKFSQTFVLAPQNGGYFVLNDIFRFVD 119
LRR_8 pfam13855
Leucine rich repeat;
258-320 1.96e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.82  E-value: 1.96e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830359765 258 PKLLSLNLSSNKLFQLDSliDVVKKAPQLKILNLSKNMLRTVwELEKMKGL-KLEQLWLEGNPL 320
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDD--GAFKGLSNLKVLDLSNNLLTTL-SPGAFSGLpSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 224-364 1.03e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.92  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 224 KLRFDPDLMKnnihmilnhrsCMAATLQIiqenfpkllsLNLSSNKLFQLDSLidvvKKAPQLKILNLSKNMLRTVWELE 303
Cdd:cd21340   107 KLTFDPRSLA-----------ALSNSLRV----------LNISGNNIDSLEPL----APLRNLEQLDASNNQISDLEELL 161

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830359765 304 KMKGlKLEQLW---LEGNPLCStfpdRSSYIRAVLECFPELSYLDGRKLllptvmNTQERKLMK 364
Cdd:cd21340   162 DLLS-SWPSLReldLTGNPVCK----KPKYRDKIILASKSLEVLDGKEI------TDTERQFLK 214
 
Name Accession Description Interval E-value
Tap-RNA_bind pfam09162
Tap, RNA-binding; Members of this family adopt a structure consisting of an alpha+beta ...
 112-191 1.80e-44

Tap, RNA-binding; Members of this family adopt a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. They are mainly found in mRNA export factors, and mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element.


Pssm-ID: 462696  Cd Length: 80  Bit Score: 152.71  E-value: 1.80e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 112 WFKVTVPCGRKYDKTQLMNSIHSLCSVPFTPVDFHCDKHRIQFFVPDFRIASALKDISYKIHNEYFQKIPIFVNPSVAPY 191
Cdd:pfam09162   1 WFKVTIPYGKKYDKKWLLNSIQSLCSVPFTPVDFHYEKNRAVFFVEDASTASALKKVSRKITDEDGRKISIFVNPSAPPY 80
TAP_C smart00804
C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF ...
 548-609 2.57e-24

C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.


Pssm-ID: 197882  Cd Length: 63  Bit Score: 96.22  E-value: 2.57e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1830359765  548 SNFKLVLSQEQQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFFK 609
Cdd:smart00804   2 ASPKPTLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPEAFA 63
UBA_TAP-C cd14342
UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF ...
 558-608 4.76e-21

UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF family of mRNA nuclear export factors including vertebrate NXF1 (also called tip-associated protein or mRNA export factor TAP), NXF2 (also called cancer/testis antigen CT39 or TAP-like protein TAPL-2), Caenorhabditis elegans NXF1 (ceNXF1), Saccharomyces cerevisiae mRNA nuclear export factor Mex67p and similar proteins. NXF proteins can stimulate nuclear export of mRNAs and facilitate the export of unspliced viral mRNA containing the constitutive transport element. It is a multi-domain protein with a nuclear localization sequence (NLS), a non-canonical mRNA-binding domain, and four leucine-rich repeats (LLR) at the N-terminal region. Its C-terminal part contains a NTF2-like domain and a ubiquitin-associated (UBA)-like domain, joined by flexible Pro-rich linker. Caenorhabditis elegans NXF1 are essential for the nuclear export of poly(A)+mRNA. In budding yeast, Mex67p binds mRNAs through its adaptor Yra1/REF. It also interacts directly with Nab2, an essential shuttling mRNA-binding protein required for export. Moreover, Mex67p associates with both nuclear pore protein (nucleoporin) FG repeats and Hpr1, a component of the TREX/THO complex linking transcription and export.


Pssm-ID: 270527  Cd Length: 51  Bit Score: 86.48  E-value: 4.76e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1830359765 558 QQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFF 608
Cdd:cd14342     1 QQQMVQQLSAQTGMNLEWSQKCLEDNGWDYEKALANFEELKAQGKIPPEAF 51
TAP_C pfam03943
TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling ...
 561-608 6.38e-21

TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling. The structure of the C-terminal domain is composed of four helices. The structure is related to the UBA domain.


Pssm-ID: 461102  Cd Length: 49  Bit Score: 86.05  E-value: 6.38e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1830359765 561 MVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFF 608
Cdd:pfam03943   2 MVQQFSQQTGMNLEWSEKCLEQNNWDYERALQNFTELKAQGKIPPEAF 49
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
256-345 4.77e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 52.63  E-value: 4.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 256 NFPKLLSLNLSSNklfQLDSLIDVVKKAPQLKILNLSKNMLRTV-WELEKMKglKLEQLWLEGNPLcSTFPDrssyirav 334
Cdd:COG4886   180 NLTNLKELDLSNN---QITDLPEPLGNLTNLEELDLSGNQLTDLpEPLANLT--NLETLDLSNNQL-TDLPE-------- 245

                          90
                  ....*....|.
gi 1830359765 335 LECFPELSYLD 345
Cdd:COG4886   246 LGNLTNLEELD 256
NTF2 cd00780
Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of ...
 383-529 5.69e-07

Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.


Pssm-ID: 238403  Cd Length: 119  Bit Score: 48.43  E-value: 5.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 383 FLREYYLMYDsEERQGLLNIYHDQACFSLtipfnpndpdlnsmyvyfkdeNDMKnfkefhiqrqlLKYTKQDIVECL--R 460
Cdd:cd00780     9 FVQQYYSIFD-NNREGLHRLYGDTSMLSR---------------------EGMK-----------QVTGRDAIVEKLssL 55

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1830359765 461 GFPQTLHAFSSfqVNICFQMETMLCFSVCGLFKEEGTPkecVRAFMRIFIALLGSSNMYIVNDQLFVRN 529
Cdd:cd00780    56 PFQKTKHKITT--VDSQPTPSGGVIVMVTGSLKLDEQP---PRKFSQTFVLAPQNGGYFVLNDIFRFVD 119
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
256-326 1.72e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 50.70  E-value: 1.72e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1830359765 256 NFPKLLSLNLSSNklfQLDSLIDVVKKAPQLKILNLSKNMLRTVWELEKMKglKLEQLWLEGNPLcSTFPD 326
Cdd:COG4886   203 NLTNLEELDLSGN---QLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLT--NLEELDLSNNQL-TDLPP 267
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
255-345 3.41e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.93  E-value: 3.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 255 ENFPKLLSLNLSSNklfQLDSLIDVVKKAPQLKILNLSKNMLRTVWE-LEKMKglKLEQLWLEGNPLcstfpdrsSYIRA 333
Cdd:COG4886   110 SNLTNLESLDLSGN---QLTDLPEELANLTNLKELDLSNNQLTDLPEpLGNLT--NLKSLDLSNNQL--------TDLPE 176

                          90
                  ....*....|..
gi 1830359765 334 VLECFPELSYLD 345
Cdd:COG4886   177 ELGNLTNLKELD 188
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
256-320 3.65e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.55  E-value: 3.65e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1830359765 256 NFPKLLSLNLSSNKLFQLDSLidvvKKAPQLKILNLSKNMLRTVWELEKMKglKLEQLWLEGNPL 320
Cdd:COG4886   226 NLTNLETLDLSNNQLTDLPEL----GNLTNLEELDLSNNQLTDLPPLANLT--NLKTLDLSNNQL 284
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
256-326 5.80e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.16  E-value: 5.80e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1830359765 256 NFPKLLSLNLSSNKLFQLDSLIdvvKKAPQLKILNLSKNMLRTV-WELEKMKglKLEQLWLEGNPLcSTFPD 326
Cdd:COG4886   157 NLTNLKSLDLSNNQLTDLPEEL---GNLTNLKELDLSNNQITDLpEPLGNLT--NLEELDLSGNQL-TDLPE 222
LRR_8 pfam13855
Leucine rich repeat;
258-320 1.96e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.82  E-value: 1.96e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830359765 258 PKLLSLNLSSNKLFQLDSliDVVKKAPQLKILNLSKNMLRTVwELEKMKGL-KLEQLWLEGNPL 320
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDD--GAFKGLSNLKVLDLSNNLLTTL-SPGAFSGLpSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 224-364 1.03e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.92  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 224 KLRFDPDLMKnnihmilnhrsCMAATLQIiqenfpkllsLNLSSNKLFQLDSLidvvKKAPQLKILNLSKNMLRTVWELE 303
Cdd:cd21340   107 KLTFDPRSLA-----------ALSNSLRV----------LNISGNNIDSLEPL----APLRNLEQLDASNNQISDLEELL 161

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1830359765 304 KMKGlKLEQLW---LEGNPLCStfpdRSSYIRAVLECFPELSYLDGRKLllptvmNTQERKLMK 364
Cdd:cd21340   162 DLLS-SWPSLReldLTGNPVCK----KPKYRDKIILASKSLEVLDGKEI------TDTERQFLK 214
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 284-326 1.03e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 37.22  E-value: 1.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1830359765 284 PQLKILNLSKNMLRTVWELEKMKglKLEQLWLEGNPLCSTFPD 326
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLP--NLETLDLSGNNKITDLSD 41
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 255-345 3.15e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.38  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 255 ENFPKLLSLNLSSNKL-------FQLDSLIDVvkkAPQLKILNLSKNMLRTVWELEKMKglKLEQLWLEGNPLCStfpdr 327
Cdd:cd21340    87 ENLTNLEELHIENQRLppgekltFDPRSLAAL---SNSLRVLNISGNNIDSLEPLAPLR--NLEQLDASNNQISD----- 156

                          90
                  ....*....|....*...
gi 1830359765 328 SSYIRAVLECFPELSYLD 345
Cdd:cd21340   157 LEELLDLLSSWPSLRELD 174
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
255-345 3.82e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.92  E-value: 3.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1830359765 255 ENFPKLLSLNLSSNKLFQldslidvvkKAPQLKILNLSKNMLRTV-WELEKMKglKLEQLWLEGNPLcstfpdrsSYIRA 333
Cdd:COG4886    93 GDLTNLTELDLSGNEELS---------NLTNLESLDLSGNQLTDLpEELANLT--NLKELDLSNNQL--------TDLPE 153

                          90
                  ....*....|..
gi 1830359765 334 VLECFPELSYLD 345
Cdd:COG4886   154 PLGNLTNLKSLD 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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