NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1834962036|ref|YP_009758628|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Liponema brevicorne]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009527)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 6-118 8.88e-62

NADH dehydrogenase subunit 3; Validated


:

Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 184.11  E-value: 8.88e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   6 YGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYN 85
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  86 QISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:MTH00018   81 QIAPFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
 
Name Accession Description Interval E-value
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 6-118 8.88e-62

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 184.11  E-value: 8.88e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   6 YGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYN 85
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  86 QISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:MTH00018   81 QIAPFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-117 8.55e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 128.70  E-value: 8.55e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   1 MFTEFYGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW 80
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1834962036  81 CVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
24-116 1.36e-38

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 124.84  E-value: 1.36e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036  24 GASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQISPFGYWTMVVFLGILT 103
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 1834962036 104 LGLVYEWLKGGLE 116
Cdd:pfam00507  82 VGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 6-118 8.88e-62

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 184.11  E-value: 8.88e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   6 YGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYN 85
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  86 QISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:MTH00018   81 QIAPFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-118 2.27e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 167.96  E-value: 2.27e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   1 MFTEFYGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW 80
Cdd:MTH00055    1 MSMEFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1834962036  81 CVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:MTH00055   81 CVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-118 2.13e-40

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 130.37  E-value: 2.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   1 MFTEFYGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW 80
Cdd:PRK06602    4 VLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1834962036  81 CVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:PRK06602   84 AVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-117 8.55e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 128.70  E-value: 8.55e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   1 MFTEFYGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW 80
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1834962036  81 CVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
24-116 1.36e-38

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 124.84  E-value: 1.36e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036  24 GASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQISPFGYWTMVVFLGILT 103
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 1834962036 104 LGLVYEWLKGGLE 116
Cdd:pfam00507  82 VGLVYAWKKGALE 94
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 8-117 1.66e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 112.67  E-value: 1.66e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFP--WCVVYN 85
Cdd:MTH00113    3 LISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLT 82

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1834962036  86 QISPFGYWTMVVFLgILTLGLVYEWLKGGLEW 117
Cdd:MTH00113   83 TPTTTLTWATIILT-LLTLGLIYEWLQGGLEW 113
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 8-117 2.27e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 112.32  E-value: 2.27e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQI 87
Cdd:MTH00136    4 ITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLP 83

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1834962036  88 SPFG--YWTMVVfLGILTLGLVYEWLKGGLEW 117
Cdd:MTH00136   84 SPLLtfFWATAV-LILLTLGLIYEWLQGGLEW 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 8-117 4.87e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 111.24  E-value: 4.87e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLF--PWCVVYN 85
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1834962036  86 QISPFGYWTMVVFLgILTLGLVYEWLKGGLEW 117
Cdd:MTH00069   82 TPTNTLFWSTLILI-LLTLGLIYEWIQGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 5-118 2.26e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 110.02  E-value: 2.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   5 FYGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVY 84
Cdd:MTH00030   10 FSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVF 89

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1834962036  85 NQISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:MTH00030   90 NQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEWD 123
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 6-117 9.55e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 103.14  E-value: 9.55e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   6 YGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYN 85
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  86 QISP-FGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:MTH00042   82 ITNPsTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 8-118 6.76e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 98.39  E-value: 6.76e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEK-QPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQ 86
Cdd:MTH00148    4 ILLSLLFALILSPVLLLLGLVLSKRsYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGS 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  87 ISPFGYWTMV-VFLGILTLGLVYEWLKGGLEWE 118
Cdd:MTH00148   84 SFSVWSLTSLfIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-117 4.16e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 96.12  E-value: 4.16e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   1 MFTEFYGILVLLIFSVVLSAIisgaSYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFI----AFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPL 76

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1834962036  81 cVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:MTH00203   77 -PWSNQLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 8-118 1.55e-25

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 92.43  E-value: 1.55e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAP--GRPFSIRFFLIGILFLIFDLEISFLFPWCVVYN 85
Cdd:PRK07928    7 ILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPagGGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFD 86

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  86 QISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:PRK07928   87 ALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 8-117 2.69e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 91.76  E-value: 2.69e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEKQP-DREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWcVVYNQ 86
Cdd:MTH00161    2 ILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPM-IFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1834962036  87 ISPFGYWTMV--VFLGILTLGLVYEWLKGGLEW 117
Cdd:MTH00161   81 TSNMMSWLITssFFILILLLGLYYEWNQGALEW 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 37-117 1.35e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 87.30  E-value: 1.35e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036  37 EKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLF--PWCVVYNQISpfgywTMV----VFLGILTLGLVYEW 110
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLN-----TMLtmalLLISLLALSLAYEW 106


                  ....*..
gi 1834962036 111 LKGGLEW 117
Cdd:MTH00106  107 TQKGLEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 15-117 1.37e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 82.60  E-value: 1.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036  15 SVVLSAIISGASYILGEKQP-DREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW-CVVYNQISPFGY 92
Cdd:MTH00012   11 SLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSKTVV 90

                          90       100
                  ....*....|....*....|....*
gi 1834962036  93 WTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:MTH00012   91 YTSILFLLILVIGLIHEWREGSLDW 115
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
5-118 4.27e-21

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 81.64  E-value: 4.27e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   5 FYGILVLLIF-SVVLSAIISGASYI---LGEKQPDREKVSAYECGFDPFGAPGRpFSIRFFLIGILFLIFDLEISFLFPW 80
Cdd:PRK08489   10 YFGVFVLLVLtFVAFFLTTRLARFIsrkLAQKNTEKLKLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFMFPW 88

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1834962036  81 CVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEWE 118
Cdd:PRK08489   89 AVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEWQ 126
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
8-117 1.51e-20

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 79.79  E-value: 1.51e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   8 ILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQI 87
Cdd:PRK07756   12 VLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKL 91

                          90       100       110
                  ....*....|....*....|....*....|
gi 1834962036  88 SPFGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:PRK07756   92 GLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 9-117 3.35e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 76.18  E-value: 3.35e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   9 LVLLIFSVVLSAIISGASYIL-----GEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPW-CV 82
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVswmlsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLpLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1834962036  83 VYNQISPFGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ndhC CHL00022
NADH dehydrogenase subunit 3
 9-117 1.64e-16

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 69.63  E-value: 1.64e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036   9 LVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQIS 88
Cdd:CHL00022   11 WAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG 90

                          90       100
                  ....*....|....*....|....*....
gi 1834962036  89 PFGYWTMVVFLGILTLGLVYEWLKGGLEW 117
Cdd:CHL00022   91 VSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 5-77 1.19e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 43.73  E-value: 1.19e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1834962036   5 FYGILVLLIFSVVLSAIISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFL 77
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMF 73
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-117 2.61e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 40.27  E-value: 2.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036  35 DREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPwcVVYNQISPFGYWTMVVFLGILTLGLVYEWLKGG 114
Cdd:MTH00060   34 GFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN--MPFQGLLFYNFWYYYFFLLLLFLGFVVELFSGY 111


                  ...
gi 1834962036 115 LEW 117
Cdd:MTH00060  112 VRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 21-117 9.13e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 39.41  E-value: 9.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834962036  21 IISGASYILGEKQPDREKVSAYECGFDPFGAPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVYNQISPFGYWTMVVFLG 100
Cdd:PRK06432   46 ILKKAAYEDTPPGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLA 125

                          90
                  ....*....|....*..
gi 1834962036 101 ILTLGLVYEWLKGGLEW 117
Cdd:PRK06432  126 MPLFAVYYAFKMGYMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH