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Conserved domains on  [gi|183763|gb|AAA35946|]
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factor H homologue [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 107-329 8.94e-20

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 87.02  E-value: 8.94e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    107 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAYIvsrQMSKYPSGERVRYQCRSPYEMFGD 185
Cdd:PHA02927  47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    186 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 259
Cdd:PHA02927 122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 183763    260 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 329
Cdd:PHA02927 199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 107-329 8.94e-20

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 87.02  E-value: 8.94e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    107 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAYIvsrQMSKYPSGERVRYQCRSPYEMFGD 185
Cdd:PHA02927  47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    186 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 259
Cdd:PHA02927 122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 183763    260 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 329
Cdd:PHA02927 199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 208-262 1.58e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 1.58e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763   208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:cd00033   1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 208-262 1.57e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.22  E-value: 1.57e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763      208 CGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
208-262 1.50e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.49  E-value: 1.50e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763     208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 107-329 8.94e-20

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 87.02  E-value: 8.94e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    107 GDTVQIICNTGYRLQN-NENNISCVERGWSTPPKCrsTDTSCVNPPTVQNAYIvsrQMSKYPSGERVRYQCRSPYEMFGD 185
Cdd:PHA02927  47 GDTIEYLCLPGYRKQKmGPIYAKCTGTGWTLFNQC--IKRRCPSPRDIDNGQL---DIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    186 EEVMCLNGN-----WT-EPPQCKdsTGKCGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEP 259
Cdd:PHA02927 122 SKSYCELGStgsmvWNpEAPICE--SVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 183763    260 P-----KCLHPCVISREIMENYNIALRWTakqklylrtgESAEFVCKRGYRLSSRShtlRTTCWDGKL---EYPTCAK 329
Cdd:PHA02927 199 PtcqivKCPHPTISNGYLSSGFKRSYSYN----------DNVDFKCKYGYKLSGSS---SSTCSPGNTwqpELPKCVR 263
PHA02831 PHA02831
EEV host range protein; Provisional
 102-276 2.29e-11

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 63.09  E-value: 2.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    102 QTHLEGDTVQIICNTGYrlqnNENNISCVERGWSTPPKCRSTdTSCVNPPTVQNAYIVSRQmSKYPSGERVRYQCR---- 177
Cdd:PHA02831  38 KVYEENENLEYKCNNNF----DKVFVTCNNGSWSTKNMCIGK-RNCKDPVTILNGYIKNKK-DQYSFGDSVTYACKvnkl 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    178 SPYEMFGDEEVMCLNGNWT-EPPQCKDSTGKCgppPPIDNGDITSFPLSVYApASSVEYQCQNLYQLEGNKRITCR-NGQ 255
Cdd:PHA02831 112 EKYSIVGNETVKCINKQWVpKYPVCKLIRCKY---PALQNGFLNVFEKKFYY-GDIVNFKCKKGFILLGSSVSTCDiNSI 187

                        170       180
                 ....*....|....*....|..
gi 183763    256 W-SEPPKCLHPCViSREIMENY 276
Cdd:PHA02831 188 WyPGIPKCVKDKV-HNEIQPNY 208
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 48-201 6.92e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 61.59  E-value: 6.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763     48 GEVFYYSCE--YNFVSPSKSFWTRITCTEEGWSP-TPKC--LRLCFFPFVENGHSESSGQTHLEGDTVQIICNTGYRLQN 122
Cdd:PHA02927 105 GSSITYSCNsgYQLIGESKSYCELGSTGSMVWNPeAPICesVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIG 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    123 NeNNISCVERGWSTPPKCRStdTSCVNpPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEP--PQ 200
Cdd:PHA02927 185 N-SGVLCSGGEWSDPPTCQI--VKCPH-PTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPelPK 260


                 .
gi 183763    201 C 201
Cdd:PHA02927 261 C 261
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 208-262 1.58e-09

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 53.24  E-value: 1.58e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763   208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:cd00033   1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 147-202 1.35e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 1.35e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 183763   147 CVNPPTVQNAYIVSRQmSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWT-EPPQCK 202
Cdd:cd00033   1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEGYTLVGSSTITCTeNGGWSpPPPTCE 57
PHA02831 PHA02831
EEV host range protein; Provisional
 158-329 1.57e-08

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 55.00  E-value: 1.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    158 IVSRQMSKYPSGERVRYQCRSPyemFGDEEVMCLNGNWTEPPQCKDSTgKCGPPPPIDNGDITSfPLSVYAPASSVEYQC 237
Cdd:PHA02831  32 VDSYENKVYEENENLEYKCNNN---FDKVFVTCNNGSWSTKNMCIGKR-NCKDPVTILNGYIKN-KKDQYSFGDSVTYAC 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    238 Q----NLYQLEGNKRITCRNGQW-SEPP-----KCLHPcVISREIMENYnialrwtaKQKLYLrtGESAEFVCKRGYRLS 307
Cdd:PHA02831 107 KvnklEKYSIVGNETVKCINKQWvPKYPvckliRCKYP-ALQNGFLNVF--------EKKFYY--GDIVNFKCKKGFILL 175

                        170       180
                 ....*....|....*....|..
gi 183763    308 SrshTLRTTCWDGKLEYPTCAK 329
Cdd:PHA02831 176 G---SSVSTCDINSIWYPGIPK 194
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 208-262 1.57e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 50.22  E-value: 1.57e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763      208 CGPPPPIDNGDITSFPlSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 147-329 7.84e-08

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 52.74  E-value: 7.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    147 CVNPPTVQNAYIvSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCL----NGNWT-EPPQCKdsTGKCGPPPPIDNGDITS 221
Cdd:PHA02639  22 CDKPDDISNGFI-TELMEKYEIGKLIEYTCNTDYALIGDRFRTCIkdknNAIWSnKAPFCM--LKECNDPPSIINGKIYN 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    222 fPLSVYAPASSVEYQCQN----LYQLEGNKRITC-RNGQWS-EPPKCLHPCVISREIMENYNIALrwTAKQKLYLRTgeS 295
Cdd:PHA02639  99 -KREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCiQDKSWKpDPPICKMINCRFPALQNGYINGI--PSNKKFYYKT--R 173

                        170       180       190
                 ....*....|....*....|....*....|....
gi 183763    296 AEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 329
Cdd:PHA02639 174 VGFSCKSGFDLVGEKYSTCNINATWFPSIPTCVR 207
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 147-201 9.38e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 48.29  E-value: 9.38e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763      147 CVNPPTVQNAYIVSRQmSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWT-EPPQC 201
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPGYTLIGSSTITCLeNGTWSpPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
208-262 1.50e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.49  E-value: 1.50e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763     208 CGPPPPIDNGDITSfPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-EPPKC 262
Cdd:pfam00084   1 CPPPPDIPNGKVSA-TKNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
147-201 1.59e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 47.49  E-value: 1.59e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 183763     147 CVNPPTVQNAYIVSRqMSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWT-EPPQC 201
Cdd:pfam00084   1 CPPPPDIPNGKVSAT-KNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSpPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 90-141 2.29e-05

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 41.29  E-value: 2.29e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 183763    90 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNEnNISCVERG-WS-TPPKCR 141
Cdd:cd00033   5 PVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSS-TITCTENGgWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 90-140 2.29e-04

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 38.66  E-value: 2.29e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 183763       90 PFVENGHSESSGQTHLEGDTVQIICNTGYRLQNNEnNISCVERG-WS-TPPKC 140
Cdd:smart00032   5 PDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSS-TITCLENGtWSpPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 165-257 4.22e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 41.61  E-value: 4.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    165 KYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDstgKCGpPPPIDNGDITSfplSVYAPASSVEYQCQNLYQLE 244
Cdd:PHA02954 146 KYSFGEHITINCDVGYEVIGASYISCTANSWNVIPSCQQ---KCD-IPSLSNGLISG---STFSIGGVIHLSCKSGFTLT 218

                         90
                 ....*....|...
gi 183763    245 GNKRITCRNGQWS 257
Cdd:PHA02954 219 GSPSSTCIDGKWN 231
PHA02817 PHA02817
EEV Host range protein; Provisional
 140-256 5.20e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 40.69  E-value: 5.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 183763    140 CRSTDTSCVNPPTVQNAYIVSRQmSKYPSGERVRYQCRS-----PYEMFGDEEVMC-LNGNWT-EPPQCKDSTGKCgppP 212
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYNKK-TEYNIGSNVTFFCGNntrgvRYTLVGEKNIICeKDGKWNkEFPVCKIIRCRF---P 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 183763    213 PIDNGDITSFPLS-VYAPASSVEYQCQNLYQLEGNKRITCR-NGQW 256
Cdd:PHA02817  93 ALQNGFVNGIPDSkKFYYESEVSFSCKPGFVLIGTKYSVCGiNSSW 138
PHA02817 PHA02817
EEV Host range protein; Provisional
 201-262 6.42e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 40.69  E-value: 6.42e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 183763    201 CKDSTGKCGPPPPIDNGDITSfPLSVYAPASSVEYQCQN-----LYQLEGNKRITC-RNGQWS-EPPKC 262
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYN-KKTEYNIGSNVTFFCGNntrgvRYTLVGEKNIICeKDGKWNkEFPVC 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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