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Conserved domains on  [gi|1870673|gb|AAC53059|]
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hindlimb expressed homeobox protein backfoot, partial [Mus musculus]

Protein Classification

homeodomain and OAR domain-containing protein( domain architecture ID 10209735)

homeodomain and OAR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain super family cl47488
Homeodomain;
1-15 5.34e-06

Homeodomain;


The actual alignment was detected with superfamily member pfam00046:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 5.34e-06
                          10
                  ....*....|....*
gi 1870673      1 RVRVWFKNRRAKWRK 15
Cdd:pfam00046  43 QVKVWFQNRRAKWKR 57
OAR pfam03826
OAR motif; The entry represents the OAR motif.
 145-162 2.30e-05

OAR motif; The entry represents the OAR motif.


:

Pssm-ID: 461067  Cd Length: 19  Bit Score: 39.70  E-value: 2.30e-05
                          10
                  ....*....|....*...
gi 1870673    145 DTCNSSLASLRLKSKQHS 162
Cdd:pfam03826   1 DRRSSSIASLRLKAKEHS 18
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
1-15 5.34e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 5.34e-06
                          10
                  ....*....|....*
gi 1870673      1 RVRVWFKNRRAKWRK 15
Cdd:pfam00046  43 QVKVWFQNRRAKWKR 57
OAR pfam03826
OAR motif; The entry represents the OAR motif.
 145-162 2.30e-05

OAR motif; The entry represents the OAR motif.


Pssm-ID: 461067  Cd Length: 19  Bit Score: 39.70  E-value: 2.30e-05
                          10
                  ....*....|....*...
gi 1870673    145 DTCNSSLASLRLKSKQHS 162
Cdd:pfam03826   1 DRRSSSIASLRLKAKEHS 18
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 1-17 6.38e-05

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 39.15  E-value: 6.38e-05
                        10
                ....*....|....*..
gi 1870673    1 RVRVWFKNRRAKWRKRE 17
Cdd:cd00086  43 QVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 1-14 3.81e-04

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.23  E-value: 3.81e-04
                           10
                   ....*....|....
gi 1870673       1 RVRVWFKNRRAKWR 14
Cdd:smart00389  44 QVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
1-15 5.34e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 42.10  E-value: 5.34e-06
                          10
                  ....*....|....*
gi 1870673      1 RVRVWFKNRRAKWRK 15
Cdd:pfam00046  43 QVKVWFQNRRAKWKR 57
OAR pfam03826
OAR motif; The entry represents the OAR motif.
 145-162 2.30e-05

OAR motif; The entry represents the OAR motif.


Pssm-ID: 461067  Cd Length: 19  Bit Score: 39.70  E-value: 2.30e-05
                          10
                  ....*....|....*...
gi 1870673    145 DTCNSSLASLRLKSKQHS 162
Cdd:pfam03826   1 DRRSSSIASLRLKAKEHS 18
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 1-17 6.38e-05

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 39.15  E-value: 6.38e-05
                        10
                ....*....|....*..
gi 1870673    1 RVRVWFKNRRAKWRKRE 17
Cdd:cd00086  43 QVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 1-14 3.81e-04

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 37.23  E-value: 3.81e-04
                           10
                   ....*....|....
gi 1870673       1 RVRVWFKNRRAKWR 14
Cdd:smart00389  44 QVKVWFQNRRAKWK 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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