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Conserved domains on  [gi|1907151885|ref|XP_036019133|]
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tetratricopeptide repeat protein 14 isoform X7 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-431 2.83e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.75  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 311 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 390
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907151885 391 leeeeKFLNAESYYKKALTLDETFKDAEDALQKLHKYMQRK 431
Cdd:COG4783    87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
123-206 3.18e-06

Ribosomal protein S1-like RNA-binding domain;


:

Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 44.52  E-value: 3.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885  123 ERGDIVIGRISSIREFGFFmVLICLGsgivrdishleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 1907151885  203 AVSL 206
Cdd:smart00316  68 ILSL 71
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-431 2.83e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.75  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 311 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 390
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907151885 391 leeeeKFLNAESYYKKALTLDETFKDAEDALQKLHKYMQRK 431
Cdd:COG4783    87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
123-206 3.18e-06

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 44.52  E-value: 3.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885  123 ERGDIVIGRISSIREFGFFmVLICLGsgivrdishleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 1907151885  203 AVSL 206
Cdd:smart00316  68 ILSL 71
TPR_11 pfam13414
TPR repeat;
316-354 1.91e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 1.91e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1907151885 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKG 354
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 329-410 4.29e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 4.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 329 YNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHrNARKYLCqtLvergGQLEEEEkflNAESYYKKAL 408
Cdd:cd24142    23 LQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-GYEKYLY--L----GQLSGGE---EALQYYEKGI 92


                  ..
gi 1907151885 409 TL 410
Cdd:cd24142    93 EI 94
RpsA COG0539
Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 ...
 114-206 7.51e-05

Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440305 [Multi-domain]  Cd Length: 348  Bit Score: 44.65  E-value: 7.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:COG0539   179 KREELLEKLEEGDVVEGTVKNITDFGAF---VDLG-GVdgllhISEISW-------------GRVKH--PSEVLKVGDEV 239

                          90
                  ....*....|....*...
gi 1907151885 189 RAGIKDIDRYHEKLAVSL 206
Cdd:COG0539   240 EVKVLKIDREKERISLSL 257
PRK00087 PRK00087
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;
114-206 1.27e-04

bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;


Pssm-ID: 234623 [Multi-domain]  Cd Length: 647  Bit Score: 44.17  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:PRK00087  467 KKEETWNSLEEGDVVEGEVKRLTDFGAF---VDIG-GVdgllhVSEISW-------------GRVEK--PSDVLKVGDEI 527

                          90
                  ....*....|....*...
gi 1907151885 189 RAGIKDIDRYHEKLAVSL 206
Cdd:PRK00087  528 KVYILDIDKENKKLSLSL 545
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 282-424 2.20e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 282 GLQSKNFSEDDFASALRKKQSASWAlkcvKIGVDYFKV--GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA 359
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYA----KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907151885 360 IEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFLNA---------ESYYKKALtLDETFKDAEDALQKL 424
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEA-GEFEEAEKHADAllkkapnspLAHYLKAL-VDFQKKNYEDARETL 284
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 288-413 2.59e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885  288 FSEDDFASALRK------KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIE 361
Cdd:PRK11447   245 FSDGDSVAAARSqlaeqqKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA 324

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907151885  362 DFELALENCPTHRNARKY--LCQT-----LVERGGQLEEEEKFLNAESYYKKALTLDET 413
Cdd:PRK11447   325 QFEKALALDPHSSNRDKWesLLKVnrywlLIQQGDAALKANNLAQAERLYQQARQVDNT 383
S1_like cd00164
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 128-205 3.24e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


Pssm-ID: 238094 [Multi-domain]  Cd Length: 65  Bit Score: 35.82  E-value: 3.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907151885 128 VIGRISSIREFGFFmvlICLGSGIvrdishleiTALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVS 205
Cdd:cd00164     1 VTGKVVSITKFGVF---VELEDGV---------EGLVHISEL-SDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65
S1 pfam00575
S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is ...
 123-206 5.93e-03

S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.


Pssm-ID: 425760 [Multi-domain]  Cd Length: 72  Bit Score: 35.34  E-value: 5.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 123 ERGDIVIGRISSIREFGFFmvlICLGSGivrdishleITALCPLRDVPSHSnHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:pfam00575   2 EKGDVVEGEVTRVTKGGAF---VDLGNG---------VEGFIPISELSDDH-VEDPDEVIKVGDEVKVKVLKVDKDRRRI 68


                  ....
gi 1907151885 203 AVSL 206
Cdd:pfam00575  69 ILSI 72
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 311-431 2.83e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.75  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 311 KIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgq 390
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG-- 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1907151885 391 leeeeKFLNAESYYKKALTLDETFKDAEDALQKLHKYMQRK 431
Cdd:COG4783    87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
312-430 1.91e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 1.91e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 312 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQL 391
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL-GRY 92

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1907151885 392 EEeekflnAESYYKKALTLDETFKDAEDALQKLHKYMQR 430
Cdd:COG0457    93 EE------ALEDYDKALELDPDDAEALYNLGLALLELGR 125
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
231-427 5.35e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 5.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 231 YYRRSVELNSNSLESYENimqssLGFVnpgvveflLEKLG-IDEShppslmrglqsknfsEDDFASALRKKQSASWALkc 309
Cdd:COG0457    30 DYEKALELDPDDAEALYN-----LGLA--------YLRLGrYEEA---------------LADYEQALELDPDDAEAL-- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 310 VKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgG 389
Cdd:COG0457    80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL-G 158

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1907151885 390 QLEEEEKFLNAESYYKKALTLDETFKDAEDALQKLHKY 427
Cdd:COG0457   159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVL 196
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 293-431 1.92e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 1.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 293 FASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPT 372
Cdd:COG2956    65 HQKLLERDPDRAEAL--LELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907151885 373 HRNArkylcqtLVERGGQLEEEEKFLNAESYYKKALTLDETFKDAEDALQKLhkYMQRK 431
Cdd:COG2956   143 NAHA-------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL--YLEQG 192
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 316-421 3.00e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.79  E-value: 3.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLcqtlverGGQLEEEE 395
Cdd:COG4235    27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL-------GLAAFQQG 99

                          90       100
                  ....*....|....*....|....*.
gi 1907151885 396 KFLNAESYYKKALTLDEtfKDAEDAL 421
Cdd:COG4235   100 DYAEAIAAWQKLLALLP--ADAPARL 123
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 312-417 4.09e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.01  E-value: 4.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 312 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLvERGGQL 391
Cdd:COG3914   118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL-QDLGRL 196

                          90       100
                  ....*....|....*....|....*.
gi 1907151885 392 EEeekflnAESYYKKALTLDETFKDA 417
Cdd:COG3914   197 EE------AIAAYRRALELDPDNADA 216
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 316-411 1.42e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.59  E-value: 1.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgqleeee 395
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG------- 136

                          90
                  ....*....|....*.
gi 1907151885 396 KFLNAESYYKKALTLD 411
Cdd:COG5010   137 QDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
316-411 1.54e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.49  E-value: 1.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEdFELALENCPTHRNARKYLCQTLVERGgqleeee 395
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG------- 73

                          90
                  ....*....|....*.
gi 1907151885 396 KFLNAESYYKKALTLD 411
Cdd:COG3063    74 DYDEALAYLERALELD 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 313-431 3.56e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 3.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 313 GVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLE 392
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA-GLLD 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1907151885 393 EeekflnAESYYKKALTLDEtfkDAEDALQKL-HKYMQRK 431
Cdd:COG2956    94 R------AEELLEKLLELDP---DDAEALRLLaEIYEQEG 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 290-411 4.18e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 4.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 290 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG4783    24 EALLEKALELDPDNPEAF--ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1907151885 370 CPTHRNARKYLCQTLVERGgqleeeeKFLNAESYYKKALTLD 411
Cdd:COG4783   102 DPEHPEAYLRLARAYRALG-------RPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 320-417 6.09e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 6.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 320 GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekfln 399
Cdd:COG3914    92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL-GRLEE------ 164

                          90
                  ....*....|....*...
gi 1907151885 400 AESYYKKALTLDETFKDA 417
Cdd:COG3914   165 AIAALRRALELDPDNAEA 182
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 292-431 2.15e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 292 DFASALRKKQSASWALKCvKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCP 371
Cdd:COG2956   131 EVLERLLKLGPENAHAYC-ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907151885 372 THRNARKYLCQTLVERgGQLEEeekflnAESYYKKALTLD-------------ETFKDAEDALQKLHKYMQRK 431
Cdd:COG2956   210 DYLPALPRLAELYEKL-GDPEE------ALELLRKALELDpsddlllaladllERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
291-421 3.03e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.15  E-value: 3.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 291 DDFASALRKKQSASWALKCVKI----GVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELA 366
Cdd:COG4785    54 AAAALAAERIDRALALPDLAQLyyerGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907151885 367 LENCPTHRNARKYLCQTLvERGGQLEEeekflnAESYYKKALTLDEtfKDAEDAL 421
Cdd:COG4785   134 LELDPDYAYAYLNRGIAL-YYLGRYEL------AIADLEKALELDP--NDPERAL 179
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 230-430 3.32e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.77  E-value: 3.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 230 LYYRRSVELNSNSLESYENImqsslgfvnpGVVEFLLEKLGIDESHppslmrglqsknfseddFASALRKKqsASWALKC 309
Cdd:COG3914    99 ALYRRALALNPDNAEALFNL----------GNLLLALGRLEEALAA-----------------LRRALALN--PDFAEAY 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 310 VKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGG 389
Cdd:COG3914   150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1907151885 390 qLEEEEKFLNAESYYKKALTLDETFK-------DAEDALQKLHKYMQR 430
Cdd:COG3914   230 -WEVYDRFEELLAALARGPSELSPFAllylpddDPAELLALARAWAQL 276
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
333-427 1.13e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 333 LEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKALTLDE 412
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-GRYEE------ALADYEQALELDP 73

                          90
                  ....*....|....*....
gi 1907151885 413 TFKDA----EDALQKLHKY 427
Cdd:COG0457    74 DDAEAlnnlGLALQALGRY 92
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
123-206 3.18e-06

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 44.52  E-value: 3.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885  123 ERGDIVIGRISSIREFGFFmVLICLGsgivrdishleITALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:smart00316   1 EVGDVVEGTVTEITPGGAF-VDLGNG-----------VEGLIPISEL-SDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRI 67


                   ....
gi 1907151885  203 AVSL 206
Cdd:smart00316  68 ILSL 71
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
290-371 6.31e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 6.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 290 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMnEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG3063    12 EEYYEKALELDPDNADAL--NNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88


                  ..
gi 1907151885 370 CP 371
Cdd:COG3063    89 DP 90
TPR_11 pfam13414
TPR repeat;
316-354 1.91e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 1.91e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1907151885 316 YFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKG 354
Cdd:pfam13414   4 YYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 324-417 3.34e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 3.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 324 DAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEeeekflnAESY 403
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE-------AEEL 73

                          90
                  ....*....|....
gi 1907151885 404 YKKALTLDETFKDA 417
Cdd:COG4235    74 LERALALDPDNPEA 87
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 290-373 3.84e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.26  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 290 EDDFASALRKKQSASWALkcVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALEN 369
Cdd:COG4783    58 IVLLHEALELDPDEPEAR--LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                  ....
gi 1907151885 370 CPTH 373
Cdd:COG4783   136 DPDD 139
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 329-410 4.29e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 4.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 329 YNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHrNARKYLCqtLvergGQLEEEEkflNAESYYKKAL 408
Cdd:cd24142    23 LQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-GYEKYLY--L----GQLSGGE---EALQYYEKGI 92


                  ..
gi 1907151885 409 TL 410
Cdd:cd24142    93 EI 94
RpsA COG0539
Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 ...
 114-206 7.51e-05

Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S1 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440305 [Multi-domain]  Cd Length: 348  Bit Score: 44.65  E-value: 7.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:COG0539   179 KREELLEKLEEGDVVEGTVKNITDFGAF---VDLG-GVdgllhISEISW-------------GRVKH--PSEVLKVGDEV 239

                          90
                  ....*....|....*...
gi 1907151885 189 RAGIKDIDRYHEKLAVSL 206
Cdd:COG0539   240 EVKVLKIDREKERISLSL 257
PRK00087 PRK00087
bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;
114-206 1.27e-04

bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1;


Pssm-ID: 234623 [Multi-domain]  Cd Length: 647  Bit Score: 44.17  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 114 RRELFFRDIERGDIVIGRISSIREFGFFmvlICLGsGI-----VRDISHleitalcplrdvpSHSNHgdPLSYYQTGDII 188
Cdd:PRK00087  467 KKEETWNSLEEGDVVEGEVKRLTDFGAF---VDIG-GVdgllhVSEISW-------------GRVEK--PSDVLKVGDEI 527

                          90
                  ....*....|....*...
gi 1907151885 189 RAGIKDIDRYHEKLAVSL 206
Cdd:PRK00087  528 KVYILDIDKENKKLSLSL 545
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 282-424 2.20e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 282 GLQSKNFSEDDFASALRKKQSASWAlkcvKIGVDYFKV--GRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKA 359
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYA----KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907151885 360 IEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKFLNA---------ESYYKKALtLDETFKDAEDALQKL 424
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEA-GEFEEAEKHADAllkkapnspLAHYLKAL-VDFQKKNYEDARETL 284
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 312-371 2.85e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.85e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 312 IGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCP 371
Cdd:COG5010    94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 328-431 3.64e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 3.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 328 EYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKA 407
Cdd:COG5010    42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS-GDKDE------AKEYYEKA 114

                          90       100
                  ....*....|....*....|....
gi 1907151885 408 LTLDETFKDAEDALQKLHKYMQRK 431
Cdd:COG5010   115 LALSPDNPNAYSNLAALLLSLGQD 138
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
338-430 5.46e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.05  E-value: 5.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 338 QNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYlcqtlveRGGQLEEEEKFLNAESYYKKALTLDETFKDA 417
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN-------RGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                          90
                  ....*....|...
gi 1907151885 418 EDALQKLHKYMQR 430
Cdd:COG4785   144 YLNRGIALYYLGR 156
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 338-421 9.03e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 9.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 338 QNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEeekflnAESYYKKALTLDETFKDA 417
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDE------AIVLLHEALELDPDEPEA 74


                  ....
gi 1907151885 418 EDAL 421
Cdd:COG4783    75 RLNL 78
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 283-378 1.78e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 283 LQSKNFSE--DDFASALRKKQSASWALKC-VKIGVDYFKVGRHVDAMNEYNKALEIDKQNV---EALVARGALYATKGSL 356
Cdd:COG1729     4 LKAGDYDEaiAAFKAFLKRYPNSPLAPDAlYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDY 83

                          90       100
                  ....*....|....*....|..
gi 1907151885 357 NKAIEDFELALENCPTHRNARK 378
Cdd:COG1729    84 DKARATLEELIKKYPDSEAAKE 105
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 294-430 2.38e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 2.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 294 ASALRKKQSASWALKcvkiGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTH 373
Cdd:TIGR02917 593 AADAAPDSPEAWLML----GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907151885 374 RNARKYLCQTLVErGGQLEEEEKFL------NAESYYKKALTLDETF--KDAEDALQKLHKYMQR 430
Cdd:TIGR02917 669 TEAQIGLAQLLLA-AKRTESAKKIAkslqkqHPKAALGFELEGDLYLrqKDYPAAIQAYRKALKR 732
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 288-413 2.59e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.45  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885  288 FSEDDFASALRK------KQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIE 361
Cdd:PRK11447   245 FSDGDSVAAARSqlaeqqKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA 324

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907151885  362 DFELALENCPTHRNARKY--LCQT-----LVERGGQLEEEEKFLNAESYYKKALTLDET 413
Cdd:PRK11447   325 QFEKALALDPHSSNRDKWesLLKVnrywlLIQQGDAALKANNLAQAERLYQQARQVDNT 383
TPR_1 pfam00515
Tetratricopeptide repeat;
340-373 2.63e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.63e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1907151885 340 VEALVARGALYATKGSLNKAIEDFELALENCPTH 373
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
S1_like cd00164
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 128-205 3.24e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


Pssm-ID: 238094 [Multi-domain]  Cd Length: 65  Bit Score: 35.82  E-value: 3.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907151885 128 VIGRISSIREFGFFmvlICLGSGIvrdishleiTALCPLRDVpSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVS 205
Cdd:cd00164     1 VTGKVVSITKFGVF---VELEDGV---------EGLVHISEL-SDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 336-410 3.63e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 3.63e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907151885 336 DKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGgqleeeeKFLNAESYYKKALTL 410
Cdd:TIGR02917  18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALG-------DYAAAEKELRKALSL 85
S1 pfam00575
S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is ...
 123-206 5.93e-03

S1 RNA binding domain; The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.


Pssm-ID: 425760 [Multi-domain]  Cd Length: 72  Bit Score: 35.34  E-value: 5.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 123 ERGDIVIGRISSIREFGFFmvlICLGSGivrdishleITALCPLRDVPSHSnHGDPLSYYQTGDIIRAGIKDIDRYHEKL 202
Cdd:pfam00575   2 EKGDVVEGEVTRVTKGGAF---VDLGNG---------VEGFIPISELSDDH-VEDPDEVIKVGDEVKVKVLKVDKDRRRI 68


                  ....
gi 1907151885 203 AVSL 206
Cdd:pfam00575  69 ILSI 72
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 326-429 8.53e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.53  E-value: 8.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907151885 326 MNEYNKALEI--------DKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERgGQLEEEEKF 397
Cdd:TIGR02917 103 QGKFQQVLDElpgktlldDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE-NRFDEARAL 181

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1907151885 398 LNaesyykKALTLDETFKDA--------------EDALQKLHKYMQ 429
Cdd:TIGR02917 182 ID------EVLTADPGNVDAlllkgdlllslgniELALAAYRKAIA 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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