NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1913869390|ref|WP_191992777|]
View 

E domain-containing protein, partial [Staphylococcus aureus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SasG_E super family cl25279
E domain; This short domain is about 50 amino acids in length. Its structure shows that it is ...
 37-84 2.35e-17

E domain; This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the pfam07501 domain and it has structural similarity with that domain although it is somewhat shorter. The E domain forms part of a rod like structure.


The actual alignment was detected with superfamily member pfam17041:

Pssm-ID: 407216 [Multi-domain]  Cd Length: 48  Bit Score: 69.17  E-value: 2.35e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1913869390  37 TIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYG 84
Cdd:pfam17041   1 KIPQGHKDEFDPNLPTDSKEEVPGKPGIKNPDTGEVVTPPVDDVTKYG 48
 
Name Accession Description Interval E-value
SasG_E pfam17041
E domain; This short domain is about 50 amino acids in length. Its structure shows that it is ...
 37-84 2.35e-17

E domain; This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the pfam07501 domain and it has structural similarity with that domain although it is somewhat shorter. The E domain forms part of a rod like structure.


Pssm-ID: 407216 [Multi-domain]  Cd Length: 48  Bit Score: 69.17  E-value: 2.35e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1913869390  37 TIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYG 84
Cdd:pfam17041   1 KIPQGHKDEFDPNLPTDSKEEVPGKPGIKNPDTGEVVTPPVDDVTKYG 48
 
Name Accession Description Interval E-value
SasG_E pfam17041
E domain; This short domain is about 50 amino acids in length. Its structure shows that it is ...
 37-84 2.35e-17

E domain; This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the pfam07501 domain and it has structural similarity with that domain although it is somewhat shorter. The E domain forms part of a rod like structure.


Pssm-ID: 407216 [Multi-domain]  Cd Length: 48  Bit Score: 69.17  E-value: 2.35e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1913869390  37 TIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYG 84
Cdd:pfam17041   1 KIPQGHKDEFDPNLPTDSKEEVPGKPGIKNPDTGEVVTPPVDDVTKYG 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH