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Conserved domains on  [gi|1939119229|gb|QPK66979|]
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cytochrome b, partial (mitochondrion) [Murexia naso]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-119 1.35e-91

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 269.20  E-value: 1.35e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:MTH00100   25 SNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYY 104

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  81 GSYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00100  105 GSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 1.35e-91

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 269.20  E-value: 1.35e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:MTH00100   25 SNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYY 104

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  81 GSYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00100  105 GSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-119 1.16e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.78  E-value: 1.16e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:cd00284    18 NISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1939119229  82 SY--LYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:cd00284    98 SYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 5.90e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 159.47  E-value: 5.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:pfam00033   8 SNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYY 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1939119229  81 G--SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:pfam00033  88 GgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-119 2.51e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 156.10  E-value: 2.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:COG1290    35 NWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYG 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1939119229  82 SylYKE----TWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:COG1290   115 A--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 1.35e-91

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 269.20  E-value: 1.35e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:MTH00100   25 SNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYY 104

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  81 GSYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00100  105 GSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 1-119 2.36e-88

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 260.99  E-value: 2.36e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:MTH00119   26 SNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYY 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  81 GSYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00119  106 GSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 2-119 2.16e-85

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 253.42  E-value: 2.16e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00131   26 NISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYG 105

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00131  106 SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGA 143
CYTB MTH00074
cytochrome b; Provisional
 2-119 7.79e-82

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 244.21  E-value: 7.79e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00074   27 NLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYG 106

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00074  107 SYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00156
cytochrome b; Provisional
 2-119 9.52e-80

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 238.14  E-value: 9.52e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00156   16 NISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYG 95

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00156   96 SYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGA 133
CYTB MTH00191
cytochrome b; Provisional
 2-119 1.60e-78

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 235.19  E-value: 1.60e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00191   23 NISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYG 102

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00191  103 SYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGA 140
CYTB MTH00145
cytochrome b; Provisional
 1-119 3.29e-74

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 224.78  E-value: 3.29e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:MTH00145   26 VNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYY 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  81 GSYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00145  106 GSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGA 144
CYTB MTH00034
cytochrome b; Validated
 2-119 1.27e-73

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 223.43  E-value: 1.27e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00034   26 NLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYG 105

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00034  106 SYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAA 143
CYTB MTH00016
cytochrome b; Validated
 2-119 1.00e-70

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 215.70  E-value: 1.00e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00016   27 NLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYG 106

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00016  107 SYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00224
cytochrome b; Provisional
 2-119 1.35e-61

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 192.44  E-value: 1.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00224   27 NISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYG 106

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00224  107 SFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 2-119 4.37e-61

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 191.07  E-value: 4.37e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00022   25 NISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYG 104

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00022  105 GYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGA 142
CYTB MTH00053
cytochrome b; Provisional
 2-120 1.60e-58

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 184.52  E-value: 1.60e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00053   27 NISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYG 106

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGAA 120
Cdd:MTH00053  107 SYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAAT 145
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-119 1.16e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.78  E-value: 1.16e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:cd00284    18 NISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1939119229  82 SY--LYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:cd00284    98 SYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-119 5.90e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 159.47  E-value: 5.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:pfam00033   8 SNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYY 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1939119229  81 G--SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:pfam00033  88 GgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
CYTB MTH00033
cytochrome b; Provisional
 2-119 1.07e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 156.64  E-value: 1.07e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00033   23 NISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYG 102

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00033  103 GYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAA 140
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-119 2.51e-47

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 156.10  E-value: 2.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:COG1290    35 NWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYG 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1939119229  82 SylYKE----TWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:COG1290   115 A--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
CYTB MTH00086
cytochrome b; Provisional
 2-119 1.85e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 142.39  E-value: 1.85e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   2 NISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYG 81
Cdd:MTH00086   15 SLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMM 94

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1939119229  82 SYLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00086   95 SYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 3-119 1.91e-29

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 108.53  E-value: 1.91e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   3 ISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYGS 82
Cdd:MTH00046   18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1939119229  83 YLYKETWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:MTH00046   98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 9-117 5.10e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 96.70  E-value: 5.10e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   9 FGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYYGSYLYKE- 87
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1939119229  88 -TWNIGIILFLTVMATAFVGYVLPWGQMSFW 117
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 1-117 1.24e-20

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 82.46  E-value: 1.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939119229   1 PNISAWWNFGSLLGACLIIQILTGFFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHIGRGIYY 80
Cdd:CHL00070   28 PHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLT 107

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1939119229  81 GSYLYKE--TWNIGIILFLTVMATAFVGYVLPWGQMSFW 117
Cdd:CHL00070  108 GGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
64-119 3.90e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 59.18  E-value: 3.90e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1939119229  64 SMFFMCLFLHIGRGIYYGSYLYKE--TWNIGIILFLTVMATAFVGYVLPWGQMSFWGA 119
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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