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Conserved domains on  [gi|194018708|ref|NP_001123446|]
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beta-defensin 125 precursor [Sus scrofa]

Protein Classification

Defensin_beta_2 domain-containing protein( domain architecture ID 10620032)

Defensin_beta_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_beta_2 pfam13841
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 25-55 2.84e-07

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


:

Pssm-ID: 463997  Cd Length: 30  Bit Score: 44.28  E-value: 2.84e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 194018708   25 RCWrYNIGHCRRRCLHLERYKHLCMNKRACC 55
Cdd:pfam13841   1 KCW-KGRGHCRKKCLKNEYYIGYCRNGTLCC 30
 
Name Accession Description Interval E-value
Defensin_beta_2 pfam13841
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 25-55 2.84e-07

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


Pssm-ID: 463997  Cd Length: 30  Bit Score: 44.28  E-value: 2.84e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 194018708   25 RCWrYNIGHCRRRCLHLERYKHLCMNKRACC 55
Cdd:pfam13841   1 KCW-KGRGHCRKKCLKNEYYIGYCRNGTLCC 30
BDD_Gal13 cd21908
beta-defensin domain found in gallinacin-13 (Gal-13); Gal-13, also called beta-defensin 13, ...
 28-55 5.14e-04

beta-defensin domain found in gallinacin-13 (Gal-13); Gal-13, also called beta-defensin 13, has bactericidal activity against Escherichia coli, Listeria monocytogenes, Salmonella typhimurium and Streptococcus pyogenes but not against Staphylococcus aureus. Gal-13 contains only one beta-defensin domain.


Pssm-ID: 439301  Cd Length: 35  Bit Score: 35.55  E-value: 5.14e-04
                         10        20
                 ....*....|....*....|....*....
gi 194018708  28 RYNIGHCRRRCLHLERYKHLCMNKRA-CC 55
Cdd:cd21908    6 RSNHGHCRRLCFHMERWEGSCSNGRLrCC 34
 
Name Accession Description Interval E-value
Defensin_beta_2 pfam13841
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 25-55 2.84e-07

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


Pssm-ID: 463997  Cd Length: 30  Bit Score: 44.28  E-value: 2.84e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 194018708   25 RCWrYNIGHCRRRCLHLERYKHLCMNKRACC 55
Cdd:pfam13841   1 KCW-KGRGHCRKKCLKNEYYIGYCRNGTLCC 30
BDD_Gal13 cd21908
beta-defensin domain found in gallinacin-13 (Gal-13); Gal-13, also called beta-defensin 13, ...
 28-55 5.14e-04

beta-defensin domain found in gallinacin-13 (Gal-13); Gal-13, also called beta-defensin 13, has bactericidal activity against Escherichia coli, Listeria monocytogenes, Salmonella typhimurium and Streptococcus pyogenes but not against Staphylococcus aureus. Gal-13 contains only one beta-defensin domain.


Pssm-ID: 439301  Cd Length: 35  Bit Score: 35.55  E-value: 5.14e-04
                         10        20
                 ....*....|....*....|....*....
gi 194018708  28 RYNIGHCRRRCLHLERYKHLCMNKRA-CC 55
Cdd:cd21908    6 RSNHGHCRRLCFHMERWEGSCSNGRLrCC 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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