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Conserved domains on  [gi|1945829015|gb|QPZ55304|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Sitta whiteheadi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-318 6.30e-153

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 432.32  E-value: 6.30e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPHTTNHMKRWHTN 318
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-318 6.30e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 432.32  E-value: 6.30e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPHTTNHMKRWHTN 318
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-298 3.45e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.81  E-value: 3.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   7 LIFATsllLGTTITISSNHWILAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLF-SSMTNAwYTGQW 84
Cdd:COG1007   108 LLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  85 DITQL-----THPTSSLILT-------SAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLFMTSKSL 149
Cdd:COG1007   184 NLAGIaaalaAGGANSPLLLlglvlvlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAFPG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 150 DS----TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLAL--LNFYL--YTLMTATIFLTLNS 221
Cdd:COG1007   264 LAadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 222 M-QVLKLSTLMTSW----TKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRL 296
Cdd:COG1007   344 LsRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423


                  ..
gi 1945829015 297 AY 298
Cdd:COG1007   424 VK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.42e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 2.42e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  23 SNHWILAWTGLEINTLAILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  91 HPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKFPPI-----TLLFMTSKSLDSTLLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 165 GGWMGLNQTQTRKILAFSSISHLGWMAIII----TYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLST-----LMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1945829015 236 KSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 8.45e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 100.79  E-value: 8.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  14 LLGTTITISSNHWILAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  93 TSSLILT------------SAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLFMTSKSLDST----L 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFGFSEawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 154 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGW--MAIIITYTPKLALLNFYL--YTLMTATIFLTLNSMQVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1945829015 227 ---LSTLMTSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-318 6.30e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 432.32  E-value: 6.30e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPHTTNHMKRWHTN 318
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-318 5.11e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 361.43  E-value: 5.11e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSlDSTLLTTMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPHTTNHMKRWHTN 318
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-318 5.49e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 358.85  E-value: 5.49e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPHTTNHMKRWHTN 318
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-313 3.15e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 323.72  E-value: 3.15e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPhTTNHMK 313
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMK 312
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-317 8.46e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 276.85  E-value: 8.46e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPHTTNHMKRWHT 317
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT 317
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-307 4.76e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 254.47  E-value: 4.76e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWY 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 TGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTITLPPH 307
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-300 1.02e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.88  E-value: 1.02e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   1 MN*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  81 tgqwdITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSldsTLLTTMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 161 STALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTS 300
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS 292
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.45e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.05  E-value: 1.45e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   5 AKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  85 DitqlthptSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLD-STLLTTMAILSTA 163
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlAYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 164 LGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLnSMQVLKLSTLMTSWTKSPALSAV 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1945829015 244 LLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTI 302
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-310 1.67e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 157.25  E-value: 1.67e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   7 LIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSmtnawyTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  87 TQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAILSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 167 WMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPALSAVLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1945829015 247 ALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTStITLPPHTTN 310
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNF-MYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 4.52e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.50  E-value: 4.52e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   8 IFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  88 QLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDstLLTTMAILSTALGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 168 MGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLSTLMTSWTKSPALSAVLLLA 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1945829015 248 LLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAYTSTI 302
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-298 3.45e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.81  E-value: 3.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   7 LIFATsllLGTTITISSNHWILAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLF-SSMTNAwYTGQW 84
Cdd:COG1007   108 LLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  85 DITQL-----THPTSSLILT-------SAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLFMTSKSL 149
Cdd:COG1007   184 NLAGIaaalaAGGANSPLLLlglvlvlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAFPG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 150 DS----TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLAL--LNFYL--YTLMTATIFLTLNS 221
Cdd:COG1007   264 LAadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 222 M-QVLKLSTLMTSW----TKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRL 296
Cdd:COG1007   344 LsRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423


                  ..
gi 1945829015 297 AY 298
Cdd:COG1007   424 VK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.42e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 2.42e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  23 SNHWILAWTGLEINTLAILPLI-SKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  91 HPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKFPPI-----TLLFMTSKSLDSTLLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 165 GGWMGLNQTQTRKILAFSSISHLGWMAIII----TYTPKLALLNFYLYTLMTATIFLTLNSMQVLKLST-----LMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1945829015 236 KSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 8.45e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 100.79  E-value: 8.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  14 LLGTTITISSNHWILAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  93 TSSLILT------------SAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLFMTSKSLDST----L 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFGFSEawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 154 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGW--MAIIITYTPKLALLNFYL--YTLMTATIFLTLNSMQVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1945829015 227 ---LSTLMTSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.76e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.90  E-value: 1.76e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  14 LLGTTITISSNHWILAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  93 TSS------------LILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLFMTSKSLDST----L 153
Cdd:PRK05777  193 LADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLRLLVVAFGGLSEdwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 154 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM--AIIITYTPKLALLNFYL--YTLMTATIFLTLNSM-QVLKLS 228
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLrRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1945829015 229 TLMTSWT----KSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRL 296
Cdd:PRK05777  353 ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.33e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.18  E-value: 3.33e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  13 LLLGTTITISSNHWILAWTGLEINTLAILPLI-SKSHHPRAVEAATKYFLVQATASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  79 WYTGQWDITQLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFmtSKSLDSTLLTTMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 159 ILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITY----TPKLALLNFYLYTLMTATIFLTLNSMQVLK--LSTLMT 232
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1945829015 233 SWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 3.97e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.46  E-value: 3.97e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  13 LLLGTTITISSNHWILAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  88 QLTHPTSSLILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTtmAILSTALGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 168 MGLNQTQTRKILAFSSISHLGW----MAIIITYTPKLALLNFYLYTLMTATIF-----LTLNSMQVLKLSTLMTswtKSP 238
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiilsLKLTKGLIVEVSGLSR---KNP 340

                         250       260
                  ....*....|....*....|....*....
gi 1945829015 239 ALSAVLLLALLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 6.93e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.06  E-value: 6.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  15 LGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAV---------EAATKYFLVQATASALVLFSSMTNAWYTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  84 --WDITQLTHPTSS----------LILTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLfmTSKSLDS 151
Cdd:MTH00198  279 mlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 152 TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLY-------TLMTATIFLTL----- 219
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALASFTVICTLeefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1945829015 220 -------------NSMQVLKLSTLMTSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 2.83e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 78.65  E-value: 2.83e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  13 LLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  93 TSSL----------ILTSAMAIKLGLVPFHFWFPEVLQGSP-----LITGLLLSTA----MKFppITLLFMTSKSLD-ST 152
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLTKVGvyaiLRV--LTLLFGADPALFlGT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 153 LLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLY----TLMTATIFLTLNSMQVL--- 225
Cdd:COG0651   274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgt 353

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1945829015 226 -KLSTLMTSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATII 282
Cdd:COG0651   354 rDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 1.51e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 1.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  51 RAVEAATKYFLVQATASALVL--FSsmtnaWYTGQ-------WDI------TQLTHPTSSLI----LTSAMAIKLGLVPF 111
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 112 HFWFPEVLQGSPL-----------ITGLLLSTAMkfppITLLFMTSKSLDSTLLTTMAILSTALGGWMGLNQTQTRKILA 180
Cdd:CHL00049  234 HQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 181 FSSISHLGWMAI-IITYTPKLALLNFYLYTLMTatIFLTLNSMQVLKLSTLMT----------SWTKSPALSAVLLLALL 249
Cdd:CHL00049  310 YSSIGQIGYVIIgIIVGDSNDGYASMITYMLFY--IFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLL 387

                         250
                  ....*....|....
gi 1945829015 250 SLAGLPPLTGFLPK 263
Cdd:CHL00049  388 SLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 1.74e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 64.69  E-value: 1.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  50 PRAVEAATKYFLVQATASALVLF-SSMTNAWYTGQwdiTQLTHPTSSLI-------------LTSAMAIKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 116 PEVLQGSPLITGLLLSTAMKFP----PITLLFMTSKSLDS---TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....
gi 1945829015 189 WMAI 192
Cdd:PRK02504  314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 1.15e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.94  E-value: 1.15e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  49 HPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQW--DITQLTHPTSSLILTS--------AMAIKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLllflaffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 119 LQ-----GSPLITGLLLSTA----MKFPpITLLFMTSKSLdSTLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:COG1008   236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYF-APLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 1945829015 190 MAI 192
Cdd:COG1008   314 VLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.58e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 1.58e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  33 LEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFS-SMTNAwYTGQWDITQL--------THPTSSLILTSAMA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 104 IKLGLVPFHFWFPEVLQG-SPLITGLLLSTAMKFP--PITLLFMT-------SKSLDSTLLTTMAILSTALGGWMGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 174 QTRKILAFSSISHLGWMAIIITYTPKLALLN--FYL--YTLMTATIFLTLNSMQVL----KLSTLMTSWTKSPALSAVLL 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1945829015 246 LALLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATIISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 2.04e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.33  E-value: 2.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  50 PRAVEAATKYFLVQATASALVLFSSMTNAWYTGQ-WDITQL-THPTSS-------LILTSAMAIKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 119 ---LQGSPLITGLLLSTA----MKFpPITLLFMTSKSLdSTLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMA 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYF-APVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  ...
gi 1945829015 192 III 194
Cdd:TIGR01972 310 LGI 312
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 2.48e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 54.76  E-value: 2.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  13 LLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATA------SALVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  87 TQLTHPTS----SLILTSAMAI------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLD------ 150
Cdd:PRK08676  191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRqsgaae 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1945829015 151 --STLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLMTATIFLTL 219
Cdd:PRK08676  271 qfSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.78e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.41  E-value: 1.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  33 LEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASALVLFS---------SMTNAWYTGQWDITQLTHPTSSL-ILTSA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 102 MAIKLGLVPFHFWFPEVLQGSPL-ITGLLLstAMKFPPITLLFMTSKSLDSTLLTT---------MAILSTALGGWMGLN 171
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPSsISAMLL--VIKQAGLYALARVLFSIYGPAINLatvgwviiiLGCLTMFVGVAMAVV 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 172 QTQTRKILAFSSISHLGWM------AIIITYTPKL----------ALLNFYLYTLMTATIFLT----LNSMQVLKLSTLM 231
Cdd:PRK08376  308 QKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMasygeialagGIYHIVNHALYKALLFLTagavIYETGTRNLNELG 387

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1945829015 232 TSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  388 GLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-211 7.89e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 50.31  E-value: 7.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   8 IFATSLLLgttiTISSNHWILAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSS----------MTN 77
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  78 AWYTGQW-DITQLTHPTSSLILTSAMAI-------KLGLVPFHFWFPEVLQGSP-----LITGLLLSTAMkFPPITLLFM 144
Cdd:PRK06458  192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYYIL 270

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1945829015 145 TSKSLDS----TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYTLM 211
Cdd:PRK06458  271 IDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.22e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.27  E-value: 3.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  50 PRAVEAATKYFLVQATASALVLFSSMTNAWY----TGQWDITQLTHPTSS--------LILTSAMAIKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 118 VLQ-----GSPLITGLLLSTAMK---------FPPITLLFmtsksldSTLLTTMAILSTALGGWMGLNQTQTRKILAFSS 183
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMGAYgllrfslplFPDASHEF-------APIIITLGVIAIIYGALVALAQTDIKKLIAYSS 309

                         170
                  ....*....|.
gi 1945829015 184 ISHLGWMAIII 194
Cdd:PRK05846  310 ISHMGFVTLGI 320
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 4.00e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 48.16  E-value: 4.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  55 AATKYFLVQATASALVLFSSMTNAWYTG--QWDITQL---THPTSSLILTSA-----MAIKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 124 LITGLLLSTAMKFPPITLL------FMTSKSLDSTLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYT 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 1945829015 198 PKLALL 203
Cdd:PRK06473  318 TPLSIL 323
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 3.51e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 45.30  E-value: 3.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  96 LILTSAMAiKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLL------FMTSKSLDSTLLTtMAILSTALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 170 LNQTQTRKILAFSSISHLGWMAIIITY-TPKLALLNFYL---YTLMTATIFLTLN-------SMQVLKLSTLmtsWTKSP 238
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMllaHALFKAALFLVVGiidhstgTRDIRKLSGL---GRRQP 362

                         170       180
                  ....*....|....*....|....*
gi 1945829015 239 ALSAVLLLALLSLAGLPPLTGFLPK 263
Cdd:PRK12644  363 VLAVVAALAAASMAGLPPLLGFVAK 387
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-190 1.77e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.22  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  23 SNHWILAWTGLEINTLAILPLISKSHH-PRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQL-----THPTSSL 96
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  97 ILTSAMAI------KLGLVPFHFWFPEVLQGSPLITGLLLSTAM---------KFPPITllfmtskSLDSTLLTTMAI-- 159
Cdd:COG1009   210 LTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPLF-------ALSPVWLTVVAIig 282

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1945829015 160 LSTAL-GGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:COG1009   283 AITALfAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.08e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  92 PTSSLILTSAMAIKLGLVPFhFWFPEVLQGSPLITGLLLSTAMK-------FPPITLLFMTSKSLDSTLLTTMAILSTAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 165 GGWMGLNQTQTRKILAFSSISHLGWMAIiitytpKLALLNFylyTLMTATIFLTLNSMQVL-----------------KL 227
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILL------GLALGTP---AGINGAIFYLVHDMVVKtalfliagslvrltgyrSL 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1945829015 228 STLMTSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  357 QYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-194 2.26e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  28 LAWtglEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQ--WDITQLT--HPTSSLILTS--- 100
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyag 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 101 ---AMAIKLGLVPFHFWFPEV-----LQGSPLITGLLLstamKFPPITLLFMTSKSLDST------LLTTMAILSTALGG 166
Cdd:PRK12561  191 fliAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLL----KMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGA 266

                         170       180
                  ....*....|....*....|....*...
gi 1945829015 167 WMGLNQTQTRKILAFSSISHLGWMAIII 194
Cdd:PRK12561  267 LNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12650 PRK12650
DUF4040 family protein;
87-263 5.52e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.57  E-value: 5.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  87 TQLTHPTSSLILTSAMAiKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDST-----LLTTMAILS 161
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMIT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 162 TALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLYT----LMTATIFLTLNSMQ----VLKLSTLMTS 233
Cdd:PRK12650  283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDIRRLGSL 362

                         170       180       190
                  ....*....|....*....|....*....|
gi 1945829015 234 WTKSPALSAVLLLALLSLAGLPPLTGFLPK 263
Cdd:PRK12650  363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 6.26e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.09  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  33 LEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTH--PTSSLILTSAMAIKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 111 FHFWFPEVLQGSPLITGLLLSTAMK----FPPITLLFMTSKSLDstLLTTMAILSTALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDL--IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 187 LGWmaiiITYTPKLALLNFYLYTLMTATIFLTLNSMQVLKL----STLMTSWTKSPALSAVLLLALLslaglPPLTGFLP 262
Cdd:PRK07234  281 LGF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMASFSIAGF-----PLLAGFVS 351


                  ....*....
gi 1945829015 263 KWLIIQELT 271
Cdd:PRK07234  352 KVLTLKNLL 360
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 6.48e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.35  E-value: 6.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  48 HHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTHPTSS---------------LILTSAmAIKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 113 FWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDST-----LLTTMAILSTALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 188 GWMAIIITYTPK------LALLNFYL--YTLMTATIFLTLN-------SMQVLKLSTLMTswtKSPALSAVLLLALLSLA 252
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                         250
                  ....*....|.
gi 1945829015 253 GLPPLTGFLPK 263
Cdd:PRK12649  392 GIPPLNGFLSK 402
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 8.64e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.85  E-value: 8.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  55 AATKYFLVQATASALVLFSSMTNAWYTGQWD------ITQLTHPTSSLILTSAM----AIKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 124 LITGLLLSTAMKFPPITL------LFMTSKSLDSTLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYT 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 1945829015 198 PKLALL 203
Cdd:PRK07363  318 TQLSLL 323
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 1.11e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.75  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015   2 N*QAKLIFATSLLLGTTITISSNHWILAWTGLEINTLAILPLISKSHHpRAVEAATKYFLVQATASALVLFSSMTNAWYT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  82 GQWDIT-------QLTHPTSSLI----LTSAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMK------FPPITLLFM 144
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygFLLVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 145 TSK-----------SLDSTLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMAIIITYTPKL----ALLNFYLYT 209
Cdd:PRK08668  255 GTKlfsefgtyrgvPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLgfagGLFHVFNHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 210 LMTATIFLTLNSM----QVLKLSTLMTSWTKSPALSAVLLLALLSLAGLPPLTGFLPKWLIIQELTKQEM 275
Cdd:PRK08668  335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.90e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.72  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  33 LEINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFS-----SMTNAWYTGqwDITQLTHP--------TSSLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 100 SAMAIKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLL-----------FMTSKSLDSTLLTTMAILSTALGGWM 168
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMILAALAIVFGSVL 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 169 GLNQTQTRKILAFSSISHLGWMAIIITYTPKLALLNFYLY----TLMTATIFLTLNSMQ----VLKLSTLMTSWTKSPAL 240
Cdd:PRK12662  297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKI 376

                         250       260
                  ....*....|....*....|....*..
gi 1945829015 241 SAVLLLALLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  377 TLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 2.14e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 101 AMAIKLGLVPFHFWFPEV-----LQGSPLITGLLLSTA------MKFPpitLLFMTSKSLDSTLLtTMAILSTALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*
gi 1945829015 170 LNQTQTRKILAFSSISHLGWMAIII 194
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITL 339
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 3.30e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.13  E-value: 3.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 109 VPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDST-----LLTTMAILSTALGGWMGLNQTQTRKILAFSS 183
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 184 ISHLGWMAIIITYTPKLALLNFYLY----TLMTATIFLTLNSM-------QVLKLSTLmtsWTKSPALSAVLLLALLSLA 252
Cdd:PRK12647  292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIdhetgtrDITKLGGL---RRAMPITAAAALLAALSMA 368

                         170
                  ....*....|....
gi 1945829015 253 GLPPLTGFLPKWLI 266
Cdd:PRK12647  369 GLPPLFGFLAKELI 382
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 3.64e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.86  E-value: 3.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  34 EINTLAILPLISKSHHPRAVEAATKYFLVQATASALVLFSSMTNAWYTGQWDITQ-----LTHPTSSLILTSAMAIKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 109 V------PFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSK--------SLDSTLLTTMAILSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKlfgglsyfPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 175 TRKILAFSSISHLGWMAIIITYTPKLAL-------LNFYLYT----LMTATIFLTLNSMQVLKLSTLMTSwtkSPALSAV 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsalfLGAGIVSYRTKTSNLRKLGGLLPV---MPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1945829015 244 LLLALLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 4.30e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.79  E-value: 4.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 105 KLGLvpfHFWFPEVLQGSPLITGLLLSTAMKFPPITLLFMTSKSLDSTLLTTMAI-----LSTALGGWMGLNQTQTRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 180 AFSSISHLGWMAIIITY--TPKLALLNFYLYTLMTATIFL---------TLNSMQVLKLSTLMTSwtkSPALSAVLLLAL 248
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|
gi 1945829015 249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLILE 414
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-318 5.22e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 34.54  E-value: 5.22e-03
                          10        20
                  ....*....|....*....|....*...
gi 1945829015 291 FFYLRLAYTSTITLPPHTTNHMKRWHTN 318
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFN 28
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 7.79e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 37.79  E-value: 7.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015  55 AATKYFLVQATASALVLFSSMTNAWYTGQWDITQLTHPTSSLILT-----SAMAIKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 125 ITGLLLSTAM-KFPPITLLFMTSKSLDSTLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLG--------WMAIIIT 195
Cdd:PRK08667  243 MSGVMLKVAVyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1945829015 196 YTPKLALLNF-------YLYTLMTATIFLTLNSM-------QVLKLSTLMTSWtksPALSAVLLLALLSLAGLPPLTGFL 261
Cdd:PRK08667  323 GLDTLALLALggalfhsLNHALFKSLLFLTAGSVvhatgtrNIEKMGGLVKLM---PYTSALFLVGAVSIAALPPFNGFA 399


                  ....*....
gi 1945829015 262 PKWLIIQEL 270
Cdd:PRK08667  400 SELLLYESF 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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