|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
322-629 |
5.10e-45 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 164.05 E-value: 5.10e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 322 LIHSLSISDQRVASVAINSSGDWIAFGCSGmGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWN 401
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 402 TLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSprPTQF-SCVAVDSSGEIVSAGAQDS 480
Cdd:cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--HTDWvNSVAFSPDGTFVASSSQDG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 481 FeIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMfDSWRTKETLTLTSDAL-AVTFRPDGAELA 559
Cdd:cd00200 158 T-IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL-STGKCLGTLRGHENGVnSVAFSPDGYLLA 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 560 VATLNSQITFWDPRMLYRWAPIRGrHDlktgrkeldkitakhsakgKAFTTLCYSADGQSILAGGMSKFV 629
Cdd:cd00200 236 SGSEDGTIRVWDLRTGECVQTLSG-HT-------------------NSVTSLAWSPDGKRLASGSADGTI 285
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
277-643 |
1.29e-33 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 135.60 E-value: 1.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 277 LAKYFLNKEGDFNNLTSAAYHKKTHLLVTGFASGIFHLHELP-EFNLIHSLSISDQRVASVAINSSGDWIAFGCSGMGQL 355
Cdd:COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLStPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 356 LVWEWQSESYVLKQQGHFNSMVALAYSPDGQ-YIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSS 434
Cdd:COG2319 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGlLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 435 LDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSfEIFVWSMQTGRLLDVLS--GHEGPVSGLCFNP- 511
Cdd:COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG-TVRLWDLETGKLLSSLTlkGHEGPVSSLSFSPd 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 512 MKSILASASWDKTVRLWDMfDSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWDPRMLyrwapirgrhdlktgr 591
Cdd:COG2319 340 GSLLVSGGSDDGTIRLWDL-RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG---------------- 402
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 19909883 592 kELDKITAKHSakgKAFTTLCYSADGQSILAGGMSKFVCLYHVREQILVKRF 643
Cdd:COG2319 403 -SLLRNLDGHT---SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
33-537 |
5.13e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 109.41 E-value: 5.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 33 VGNRVTVFDLKNNRSNTLPLATKYNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFV 112
Cdd:COG2319 2 VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 113 VTKGN-IAQMYHAPGKKREFNAFvldktYFGPYDETTCIDWT--DDSKCFVVGSKDMSTWVFGAERWDNLIYYALSGHKD 189
Cdd:COG2319 82 SGSSDgTIKLWDLDNGEKLIKSL-----EGLHDSSVSKLALSspDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 190 AIVA-CFFESNSLDLYSLSQDGALCVWQCDTPPEGLRLKAPRGWkadilqrekeeeeedeeegdrettirgkttpaeqer 268
Cdd:COG2319 157 SVTSlAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------------------------------ 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 269 VGKVKYSrlakyflnkegdfnnltsaayHKKTHLLVTGFASGIFHLHELPEFNLIHSlSISDQRVASVAINSSGDWIAFG 348
Cdd:COG2319 201 VSSLAFS---------------------PDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLAS 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 349 CSGMGQLLVWEWQSESYVLKQ-QGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTE--HSSGVTGVTFTT 425
Cdd:COG2319 259 GSSDGTIRLWDLRSSSSLLRTlSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLkgHEGPVSSLSFSP 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 426 TGHVIVTS-SLDGTVRAFDLHRYRNFRTFtsPRPTQFSCVAVDSSGEIVSAGAQDSFeIFVWSMQTGRLLDVLSGHEGPV 504
Cdd:COG2319 339 DGSLLVSGgSDDGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSRV 415
|
490 500 510
....*....|....*....|....*....|...
gi 19909883 505 SGLCFNPMKSILASASWDKTVRLWDMFDSWRTK 537
Cdd:COG2319 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
|
|
| Utp12 |
pfam04003 |
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ... |
770-875 |
2.27e-24 |
|
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.
Pssm-ID: 427644 Cd Length: 106 Bit Score: 98.38 E-value: 2.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 770 NEKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLAASF-EESRHLEFYLIWTQKLLMSHGQRLKSRAgQLLPVVQFL 848
Cdd:pfam04003 1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLaERSPHLELLLRWLKFLLRTHGGYLVSNP-DLRPVLRSL 79
|
90 100
....*....|....*....|....*..
gi 19909883 849 QKGLQRHLDDVSKLCDWNRFNIQYVLA 875
Cdd:pfam04003 80 QKLLRRRLKELKDLLGLNLGALDYLLS 106
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
490-529 |
2.37e-10 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 56.17 E-value: 2.37e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 19909883 490 TGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWD 529
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
20-401 |
8.20e-10 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 60.81 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 20 LNFTHDGNSVISPVGNR-VTVFDLKNNR-SNTLPLATKyNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFH-FK 96
Cdd:cd00200 15 VAFSPDGKLLATGSGDGtIKVWDLETGElLRTLKGHTG-PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTgHT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 97 GSVHSVSFSPDGRkFVVTKG--NIAQMYhapgkkrEFNAFVLDKTYFGPYDETTCIDWTDDSKcFVVGSKDMST---WVF 171
Cdd:cd00200 94 SYVSSVAFSPDGR-ILSSSSrdKTIKVW-------DVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTiklWDL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 172 GAERwdnlIYYALSGHKDAIvacffesnsldlyslsqdgalcvwqcdtppeglrlkaprgwkadilqrekeeeeedeeeg 251
Cdd:cd00200 165 RTGK----CVATLTGHTGEV------------------------------------------------------------ 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 252 drettirgkttpaeqervgkvkysrlakyflnkegdfnnlTSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQ 331
Cdd:cd00200 181 ----------------------------------------NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 332 RVASVAINSSGDWIAfGCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWN 401
Cdd:cd00200 221 GVNSVAFSPDGYLLA-SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
491-529 |
3.91e-09 |
|
WD domain, G-beta repeat;
Pssm-ID: 425662 [Multi-domain] Cd Length: 39 Bit Score: 52.73 E-value: 3.91e-09
10 20 30
....*....|....*....|....*....|....*....
gi 19909883 491 GRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWD 529
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
322-629 |
5.10e-45 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 164.05 E-value: 5.10e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 322 LIHSLSISDQRVASVAINSSGDWIAFGCSGmGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWN 401
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 402 TLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSprPTQF-SCVAVDSSGEIVSAGAQDS 480
Cdd:cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--HTDWvNSVAFSPDGTFVASSSQDG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 481 FeIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMfDSWRTKETLTLTSDAL-AVTFRPDGAELA 559
Cdd:cd00200 158 T-IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL-STGKCLGTLRGHENGVnSVAFSPDGYLLA 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 560 VATLNSQITFWDPRMLYRWAPIRGrHDlktgrkeldkitakhsakgKAFTTLCYSADGQSILAGGMSKFV 629
Cdd:cd00200 236 SGSEDGTIRVWDLRTGECVQTLSG-HT-------------------NSVTSLAWSPDGKRLASGSADGTI 285
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
302-529 |
2.94e-36 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 138.62 E-value: 2.94e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 302 LLVTGFASGIFhLHELPEFNLIHSLSISDQRVASVAINSSGDWIAfGCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAY 381
Cdd:cd00200 66 LASGSSDKTIR-LWDLETGECVRTLTGHTSYVSSVAFSPDGRILS-SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 382 SPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSpRPTQF 461
Cdd:cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGV 222
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19909883 462 SCVAVDSSGEIVSAGAQDSfEIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWD 529
Cdd:cd00200 223 NSVAFSPDGYLLASGSEDG-TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
277-643 |
1.29e-33 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 135.60 E-value: 1.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 277 LAKYFLNKEGDFNNLTSAAYHKKTHLLVTGFASGIFHLHELP-EFNLIHSLSISDQRVASVAINSSGDWIAFGCSGMGQL 355
Cdd:COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLStPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 356 LVWEWQSESYVLKQQGHFNSMVALAYSPDGQ-YIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSS 434
Cdd:COG2319 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGlLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 435 LDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSfEIFVWSMQTGRLLDVLS--GHEGPVSGLCFNP- 511
Cdd:COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG-TVRLWDLETGKLLSSLTlkGHEGPVSSLSFSPd 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 512 MKSILASASWDKTVRLWDMfDSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWDPRMLyrwapirgrhdlktgr 591
Cdd:COG2319 340 GSLLVSGGSDDGTIRLWDL-RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG---------------- 402
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 19909883 592 kELDKITAKHSakgKAFTTLCYSADGQSILAGGMSKFVCLYHVREQILVKRF 643
Cdd:COG2319 403 -SLLRNLDGHT---SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
370-726 |
1.26e-32 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 128.22 E-value: 1.26e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 370 QGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRN 449
Cdd:cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 450 FRTFTSPRPTqFSCVAVDSSGEIVSAGAQDSfEIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWD 529
Cdd:cd00200 86 VRTLTGHTSY-VSSVAFSPDGRILSSSSRDK-TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 530 MfDSWRTKETLTLtsdalavtfrpdgaelavatlnsqitfwdprmlyrwapirgrHDlktgrkeldkitakhsakgKAFT 609
Cdd:cd00200 164 L-RTGKCVATLTG------------------------------------------HT-------------------GEVN 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 610 TLCYSADGQSILAGGMSKFVCLYHVREQILVKrfelscnlSLDAMEEFLNRRNMTEFGNLALidqdAGEENGVAVpLPGV 689
Cdd:cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG--------TLRGHENGVNSVAFSPDGYLLA----SGSEDGTIR-VWDL 248
|
330 340 350
....*....|....*....|....*....|....*..
gi 19909883 690 RKGDMSSRHFKPEIRVTSLRFSPTGRCWAATSTEGLL 726
Cdd:cd00200 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
370-645 |
1.02e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 111.72 E-value: 1.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 370 QGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGH-----VIVTSSLDGTVRAFDL 444
Cdd:COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPdgnsiLLASSSLDGTVKLWDL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 445 HRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPVSGLCFNP-MKSILASASWDK 523
Cdd:COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPdGGLLIASGSSDG 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 524 TVRLWDMFDSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWDPRMLyrwapirgrhdlktgrKELDKITAKHSa 603
Cdd:COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS----------------SSLLRTLSGHS- 284
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 19909883 604 kgKAFTTLCYSADGQSILAGGMSKFVCLYHVREQILVKRFEL 645
Cdd:COG2319 285 --SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
33-537 |
5.13e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 109.41 E-value: 5.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 33 VGNRVTVFDLKNNRSNTLPLATKYNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFV 112
Cdd:COG2319 2 VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 113 VTKGN-IAQMYHAPGKKREFNAFvldktYFGPYDETTCIDWT--DDSKCFVVGSKDMSTWVFGAERWDNLIYYALSGHKD 189
Cdd:COG2319 82 SGSSDgTIKLWDLDNGEKLIKSL-----EGLHDSSVSKLALSspDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 190 AIVA-CFFESNSLDLYSLSQDGALCVWQCDTPPEGLRLKAPRGWkadilqrekeeeeedeeegdrettirgkttpaeqer 268
Cdd:COG2319 157 SVTSlAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------------------------------ 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 269 VGKVKYSrlakyflnkegdfnnltsaayHKKTHLLVTGFASGIFHLHELPEFNLIHSlSISDQRVASVAINSSGDWIAFG 348
Cdd:COG2319 201 VSSLAFS---------------------PDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLAS 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 349 CSGMGQLLVWEWQSESYVLKQ-QGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTE--HSSGVTGVTFTT 425
Cdd:COG2319 259 GSSDGTIRLWDLRSSSSLLRTlSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLkgHEGPVSSLSFSP 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 426 TGHVIVTS-SLDGTVRAFDLHRYRNFRTFtsPRPTQFSCVAVDSSGEIVSAGAQDSFeIFVWSMQTGRLLDVLSGHEGPV 504
Cdd:COG2319 339 DGSLLVSGgSDDGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSRV 415
|
490 500 510
....*....|....*....|....*....|...
gi 19909883 505 SGLCFNPMKSILASASWDKTVRLWDMFDSWRTK 537
Cdd:COG2319 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
|
|
| Utp12 |
pfam04003 |
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ... |
770-875 |
2.27e-24 |
|
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.
Pssm-ID: 427644 Cd Length: 106 Bit Score: 98.38 E-value: 2.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 770 NEKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLAASF-EESRHLEFYLIWTQKLLMSHGQRLKSRAgQLLPVVQFL 848
Cdd:pfam04003 1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLaERSPHLELLLRWLKFLLRTHGGYLVSNP-DLRPVLRSL 79
|
90 100
....*....|....*....|....*..
gi 19909883 849 QKGLQRHLDDVSKLCDWNRFNIQYVLA 875
Cdd:pfam04003 80 QKLLRRRLKELKDLLGLNLGALDYLLS 106
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
58-469 |
2.77e-18 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 88.99 E-value: 2.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 58 IKCVGLSPDGRLAIIVDEGGAALLVSLVC-RSVLHHFHFK--GSVHSVSF-SPDGRKFVVTKGNIaqmyhaPGKKREFN- 132
Cdd:COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNgEKLIKSLEGLhdSSVSKLALsSPDGNSILLASSSL------DGTVKLWDl 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 133 --AFVLDKTYFGPYDETTCIDWTDDSKCFVVGS-KDMSTWVFGAERWDNLiyYALSGHKDAIVAC-FFESNSLDLYSLSQ 208
Cdd:COG2319 142 stPGKLIRTLEGHSESVTSLAFSPDGKLLASGSsLDGTIKLWDLRTGKPL--STLAGHTDPVSSLaFSPDGGLLIASGSS 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 209 DGALCVWQCDTppeGLRLKAPRGWKADILQREKEEEEEDEEEGDRETTIRGKTTpaeqervgKVKYSRLAKYFLNKEGdf 288
Cdd:COG2319 220 DGTIRLWDLST---GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL--------RSSSSLLRTLSGHSSS-- 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 289 nnLTSAAYHKKTHLLVTGFASGIFHLHEL--PEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGMGQLLVWEWqSESYV 366
Cdd:COG2319 287 --VLSVAFSPDGKLLASGSSDGTVRLWDLetGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-RTGKP 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 367 LKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHR 446
Cdd:COG2319 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
410 420
....*....|....*....|...
gi 19909883 447 YRNFRTFTSPRPTQFSCVAVDSS 469
Cdd:COG2319 444 SLKSVSFSPDGKVLASKSSDLSV 466
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
22-413 |
2.28e-15 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 79.75 E-value: 2.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 22 FTHDGNSVISPVG---NRVTVFDLKNNRSNTLPLATKY-NIKCVGLSPDGR-LAIIVDEGGAALLVSLVCRSVLH--HFH 94
Cdd:COG2319 118 SSPDGNSILLASSsldGTVKLWDLSTPGKLIRTLEGHSeSVTSLAFSPDGKlLASGSSLDGTIKLWDLRTGKPLStlAGH 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 95 fKGSVHSVSFSPDGRKFVVTKGNIAQMYHapgkkREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAE 174
Cdd:COG2319 198 -TDPVSSLAFSPDGGLLIASGSSDGTIRL-----WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 175 RWDNLIYYaLSGHKDAIVACFFESNSLDLYSLSQDGALCVWQCDTPPEglrlkaprgwkadilqrekeeeeedeeegdre 254
Cdd:COG2319 272 SSSSLLRT-LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------------------------- 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 255 ttirgkttpaeqervgkvkysrlaKYFLNKEGDFNNLTSAAYHKKTHLLVTGFAS-GIFHLHELPEFNLIHSLSISDQrV 333
Cdd:COG2319 319 ------------------------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDdGTIRLWDLRTGKPLKTLEGHSN-V 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 334 ASVAINSSGDWIAFgCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTE 413
Cdd:COG2319 374 LSVSFSPDGRVVSS-GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
490-529 |
2.37e-10 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 56.17 E-value: 2.37e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 19909883 490 TGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWD 529
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
20-401 |
8.20e-10 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 60.81 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 20 LNFTHDGNSVISPVGNR-VTVFDLKNNR-SNTLPLATKyNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFH-FK 96
Cdd:cd00200 15 VAFSPDGKLLATGSGDGtIKVWDLETGElLRTLKGHTG-PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTgHT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 97 GSVHSVSFSPDGRkFVVTKG--NIAQMYhapgkkrEFNAFVLDKTYFGPYDETTCIDWTDDSKcFVVGSKDMST---WVF 171
Cdd:cd00200 94 SYVSSVAFSPDGR-ILSSSSrdKTIKVW-------DVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTiklWDL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 172 GAERwdnlIYYALSGHKDAIvacffesnsldlyslsqdgalcvwqcdtppeglrlkaprgwkadilqrekeeeeedeeeg 251
Cdd:cd00200 165 RTGK----CVATLTGHTGEV------------------------------------------------------------ 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 252 drettirgkttpaeqervgkvkysrlakyflnkegdfnnlTSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQ 331
Cdd:cd00200 181 ----------------------------------------NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 332 RVASVAINSSGDWIAfGCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWN 401
Cdd:cd00200 221 GVNSVAFSPDGYLLA-SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
491-529 |
3.91e-09 |
|
WD domain, G-beta repeat;
Pssm-ID: 425662 [Multi-domain] Cd Length: 39 Bit Score: 52.73 E-value: 3.91e-09
10 20 30
....*....|....*....|....*....|....*....
gi 19909883 491 GRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWD 529
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
20-397 |
7.70e-08 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 55.87 E-value: 7.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 20 LNFTHDGNSVISPVGNRVTV--FDLKNNRSNTLPLATKYNIKCVGLSPDGRLAII-VDEGGAALLVSLVCRSVLH---HF 93
Cdd:COG2319 161 LAFSPDGKLLASGSSLDGTIklWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAsGSSDGTIRLWDLSTGKLLRstlSG 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 94 HFKGSVHSvsFSPDGRKFVVT-KGNIAQMYHAPGKKREFnafvldKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFG 172
Cdd:COG2319 241 HSDSVVSS--FSPDGSLLASGsSDGTIRLWDLRSSSSLL------RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 173 AERWDNLIYYALSGHKDAIVACFFESNSLDLY-SLSQDGALCVWQCDTppeglrlkaprgwkadilqrekeeeeedeeeg 251
Cdd:COG2319 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVsGGSDDGTIRLWDLRT-------------------------------- 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 252 drettirgkttpaeqervgkvkysrlaKYFLNKEGDFNNLTSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQ 331
Cdd:COG2319 361 ---------------------------GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19909883 332 RVASVAINSSGDWIAFGCSGmGQLLVWEWQSESYVlkqqghfnsmvaLAYSPDGQYIVTGGDDGKV 397
Cdd:COG2319 414 RVTSLDFSPDGKSLASGSSD-NTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
362-401 |
1.16e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.77 E-value: 1.16e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 19909883 362 SESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWN 401
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
370-401 |
1.78e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 425662 [Multi-domain] Cd Length: 39 Bit Score: 45.41 E-value: 1.78e-06
10 20 30
....*....|....*....|....*....|..
gi 19909883 370 QGHFNSMVALAYSPDGQYIVTGGDDGKVKVWN 401
Cdd:pfam00400 8 EGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
497-732 |
2.58e-05 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 225201 [Multi-domain] Cd Length: 466 Bit Score: 47.78 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 497 LSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMFDSWRTKETLTLTSDALAVTFR---PDGAELAVAT--LNSQITFWD 571
Cdd:COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAlssPDGNSILLASssLDGTVKLWD 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 572 PRMLYrwapirgrhdlktgrkeldKITAKHSAKGKAFTTLCYSADGQSILAGGMSK-FVCLYHVREQILVKrfelscnlS 650
Cdd:COG2319 141 LSTPG-------------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDgTIKLWDLRTGKPLS--------T 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19909883 651 LDAMEEFLNRRNMTEFGNLALidqdAGEENGVAVPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATSTEGLL-IFS 729
Cdd:COG2319 194 LAGHTDPVSSLAFSPDGGLLI----ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIrLWD 269
|
...
gi 19909883 730 LDA 732
Cdd:COG2319 270 LRS 272
|
|
|