|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
4-570 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 937.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMC 83
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESS-LELTADEKKALQKVSG 322
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSlLDLTADEKAALQKVSQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 323 ITNLENITKAIKAFSQLDFSSDTAS--SLSFELALIDASLDENTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNIPTK 400
Cdd:PRK14950 321 IANLEALTKWVKAFSQLDFQLRTTSygQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 401 EPKTETLTKPNTSAETAATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPKEEEKVLIGAGDIIEQLKVSWKSILDQAPd 480
Cdd:PRK14950 401 EPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAIWKQILRDVP- 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 481 nlKRSAAVAILRSAGVRPVSMDKNIVTLSFKYKYHKDKIEELENRKVTAELISNFVGKTCTLVC---------------I 545
Cdd:PRK14950 480 --PRSPAVQALLSSGVRPVSVEKNTLTLSFKSKFHKDKIEEPENRKITEELLSNFVGKTCAVRCtieekseepgdlreqI 557
|
570 580
....*....|....*....|....*.
gi 2007572859 546 SEAETNHLVKQAQKL-GAQIISVEEK 570
Cdd:PRK14950 558 REARKDHLVKAAQNIfDAQIISVEEK 583
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
4-570 |
3.08e-173 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 502.09 E-value: 3.08e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtNQGKGEPCNTCPMC 83
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPDGEPCNECEIC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243
Cdd:PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAE-SSLELTADEKKALQKVSG 322
Cdd:PRK05563 240 VTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPElEILDESTENDELFKELSE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 323 ITNLENITKAIKAFS----QLDFSsdTASSLSFELALIDASldeNTVPLPNKPKDEIPAVKAdKPAPLEApktaasnnip 398
Cdd:PRK05563 320 KLDIERLYRMIDILNdaqqQIKWT--NQPRIYLEVALVKLC---EQAAASPEYDTELEVLLQ-RVEQLEQ---------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 399 tkepKTETL-TKPNTSAETAATPKPHTKESAPKltraaipieekpkyTAPAPPKEEEKVLIGAGDI-IEQLKVSWKSILD 476
Cdd:PRK05563 384 ----ELKQLkAQPVGVAPEQKEKKKEKKKNKKK--------------KYKVPRGKIYKVLKEATRQdLELLKNVWGEILE 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 477 QapdnLK--RSAAVAILRSAgvRPVSMDKNIVTLSFKYKYHKDK-IEELENRKVTAELISNFVGKTCTLVCISEAETNHL 553
Cdd:PRK05563 446 S----LKaqRKSLRALLVNS--EPVAASEDTVVLAFEYEIHFEKaMLDKELNDTIENILSKLLGKSVEIVAVPEDEWQKI 519
|
570
....*....|....*..
gi 2007572859 554 VKQAQKLGAQIISVEEK 570
Cdd:PRK05563 520 REEFLQKHKNEEEEEEE 536
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
7-356 |
4.43e-164 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 470.90 E-value: 4.43e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMCLSI 86
Cdd:TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP-DGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 87 TEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKV 166
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 167 LPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLELTADEKKALQKVSGITNL 326
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALKLSL 320
|
330 340 350
....*....|....*....|....*....|....
gi 2007572859 327 ENITKAI----KAFSQLDFSSDtaSSLSFELALI 356
Cdd:TIGR02397 321 EFLLRLLdillEALKDLRFSND--PRIWLEMTLL 352
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
4-356 |
1.36e-152 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 441.17 E-value: 1.36e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVfyrkwrPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMC 83
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPT-GEPCGECESC 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDA-ASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTE 162
Cdd:COG2812 74 RAIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 IHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGAeislsqvq 242
Cdd:COG2812 154 PQKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQ-AIAFGL-------- 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 243 aalgISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLELTADEKKALQKVSG 322
Cdd:COG2812 225 ----LDRRELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELLVNEDERERLQELAR 300
|
330 340 350
....*....|....*....|....*....|....*...
gi 2007572859 323 ITNLENITKAIKAFS----QLDFSSDTAssLSFELALI 356
Cdd:COG2812 301 RLSPERLLRAIQILLearrELERNVNPR--LALEMLLL 336
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
4-435 |
9.44e-132 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 396.42 E-value: 9.44e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCttNQG-KGEPCNTCPM 82
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC--EQGlTAEPCNVCPP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 83 CLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTE 162
Cdd:PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 IHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQ 242
Cdd:PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 243 AALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNS--GAESSLELTADEKKALQKV 320
Cdd:PRK14965 239 ELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAvgEPGDLLDLSEAELAELRAQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 321 SGITNLENITK----AIKAFSQLDFSSdtASSLSFELALID-ASLD---------------ENTVPLPNKPKDEIPAvka 380
Cdd:PRK14965 319 AAAADAADLQRhltlLLRAEGEMAHAS--FPRLVLEMALLKmATLApgapvselldrlealERGAPAPPSAAWGAPT--- 393
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 381 dkPAPLEAPKTAASNNIPTKEPKTETLTKPNTSAETAATPKPHTKESAPKLTRAA 435
Cdd:PRK14965 394 --PAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASA 446
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
4-524 |
5.43e-124 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 378.15 E-value: 5.43e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQG-KGEPCNTCPM 82
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKpTPEPCGKCEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 83 CLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTE 162
Cdd:PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 IHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGaEISLSQVQ 242
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPG-PITPEAVW 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 243 AALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSgAESSLELTA---DEKKALQK 319
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKT-APNRPDLVAvsqQTWDELCK 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 320 VSGITNLENITKAIK----AFSQLDFSsdTASSLSFELALIDAsldentvpLPNKPKDEIPAvkadkpAPLEAPKTAASN 395
Cdd:PRK14948 319 LAKQINLERILQWQQhlkgSEYQLKNS--TQPRLWLEVTLLGL--------LPSAFISEIAN------ASAPANPTPAPN 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 396 NIPTKEPKTETLTKPNTSAETAATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPKEEekvligagdiieqLKVSWKSIL 475
Cdd:PRK14948 383 PSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN-------------LEELWQQIL 449
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 2007572859 476 DQAPDNLKRsaavAILRSAGvRPVSMDKNIVTLSFK---YKYHKDKIEELEN 524
Cdd:PRK14948 450 AKLELPSTR----MLLSQQA-ELVSLDSNRAVIAVSpnwLGMVQSRKPLLEQ 496
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
7-292 |
3.18e-119 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 364.99 E-value: 3.18e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEP----CNTCPM 82
Cdd:PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPtidlCGVGEH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 83 CLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTE 162
Cdd:PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 IHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQ-IATTYGaEISLSQV 241
Cdd:PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQaIAHGAG-EVTAEAV 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2007572859 242 QAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDY 292
Cdd:PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEF 301
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
4-415 |
1.87e-115 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 354.08 E-value: 1.87e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtNQGKGEPCNTCPMC 83
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTPMPCGECSSC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243
Cdd:PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSG--AESSLELTADE--KKALQk 319
Cdd:PRK06647 240 KMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGikNEAFIGIKAERlpEKLRE- 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 320 vsgiTNLENITKAI----KAFSQLDFSSDTASSLsfELALIDASLDENTVPlPNKPKDEIPAVKA---DKPAPLEAPKTA 392
Cdd:PRK06647 319 ----FDLSQIERAIsvllETYRDLQFSVNPRYEL--EINFSKILRLKDYVP-NHELIKQIQDLESkllEHAAPDSCNFDV 391
|
410 420
....*....|....*....|....
gi 2007572859 393 ASNN-IPTKEPKTEtlTKPNTSAE 415
Cdd:PRK06647 392 GSDNeSTDDLSPIP--IDPPLKAE 413
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
11-442 |
2.80e-115 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 355.24 E-value: 2.80e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMCLSITEGS 90
Cdd:PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 91 SMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTI 170
Cdd:PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 171 MSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGD 250
Cdd:PRK14971 169 LSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDY 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 251 ERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSL-ELTADEKKALQKVSGITNLENI 329
Cdd:PRK14971 249 DYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLlEVGESIRQRYLEQAQKCPMSFL 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 330 TKAIKAFSQLDFSSDTASS--LSFELALID-ASL--DENTVPLPNKPKDEI-PAVKADKPAPLEAPKTAAS-----NNIP 398
Cdd:PRK14971 329 YRALKLCNQCDLNYRASKNkrLLVELTLIQlAQLtqKGDDASGGRGPKQHIkPVFTQPAAAPQPSAAAAASpspsqSSAA 408
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2007572859 399 TKEPKTETLTKPNTSAETAATPKP-----HTKESAPKLTRAAIPIEEKP 442
Cdd:PRK14971 409 AQPSAPQSATQPAGTPPTVSVDPPaavpvNPPSTAPQAVRPAQFKEEKK 457
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
10-522 |
1.29e-110 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 339.89 E-value: 1.29e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 10 YRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKgePCNTCPMCLSITEG 89
Cdd:PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK--PCGECESCLAVRRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 90 SSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPT 169
Cdd:PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 170 IMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTyGAEISLSQVQAALGISG 249
Cdd:PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQVEEALGLPP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 250 DERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLELTADEKKALqkvsgitnleni 329
Cdd:PRK14963 242 QERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLL------------ 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 330 tkaiKAFSQLDFSSD----TASSLSFELALIDASLdentvPLPNKPKDEIPAVKADKPAPLEAPKTAAsnniPTKEPKTE 405
Cdd:PRK14963 310 ----AAMTALDEQMErfarRSDALSLELALLHALL-----ALGGAPSEGVAAVAPPAPAPADLTQRLN----RLEKEVRS 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 406 TLTKPNTSAETAATPKPhtkESAPKLTRAAIPIEEKPKYTAPAPPkeeekvligAGDIIEQLKVSWKSILDQAPDNLKrs 485
Cdd:PRK14963 377 LRSAPTAAATAAGAPLP---DFDPRPRGPPAPEPARSAEAPPLVA---------PAAAPAGLALRWRDVLAALKMQLR-- 442
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 2007572859 486 aavAILRSAgvRPVSMDKNIVTL-----SFKYKYHKDKIEEL 522
Cdd:PRK14963 443 ---AFLREA--RPHVEEGYVSLTfperaSFHYKQAQKKLAEL 479
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
4-390 |
1.45e-107 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 331.40 E-value: 1.45e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMC 83
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQ-EGEPCGKCENC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYG-AEISLSQVQ 242
Cdd:PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQ-ASTYGeGKVTIKVVE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 243 AALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNS--GAESSLELTADEKKALQKV 320
Cdd:PRK14953 239 EFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSlkNPEEVFQVEDFYRKLEKPL 318
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2007572859 321 SGITNLEN-ITKAIKAFSQLDFssdtasSLSFELALIDASLDENTVPL-------PNKPKDEIPAVKADKPAPLEAPK 390
Cdd:PRK14953 319 EALLYLEDvINKAFSEARTRDP------LRAYELAILKLLYVKDIVPIsellkegSKQETKEQPEKKEEEKEELDIDK 390
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
7-435 |
1.32e-105 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 324.80 E-value: 1.32e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMCLSI 86
Cdd:PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 87 TEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKV 166
Cdd:PRK06305 85 SSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 167 LPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Cdd:PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNsgAESSLELTAdekkalQKVSGITNL 326
Cdd:PRK06305 245 LLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQ--YNKQLSSVA------TKYSSEQLL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 327 ENITKAIKAFSQLDFSSDTASSLsfELALIdasldeNTVPLPNKPKDE--IPAVKADKPAPLE-APKTAASNNIPTKEPK 403
Cdd:PRK06305 317 EIIDFLGESAKHIQLTIFEKTFL--ETVII------HLIRIYQRPTLSqlVSQIKSPAFTQLRlESCPPQIKSSNSQQTV 388
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2007572859 404 TETLTKP-----NTSAETAATPKP-----HTKESAPKLTRAA 435
Cdd:PRK06305 389 SSPQPQPvakleQGSLLTAASPQTkketiHQEVPSPSLSKSA 430
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
9-413 |
4.49e-101 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 321.77 E-value: 4.49e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 9 FYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMCLSite 88
Cdd:PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN--- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 89 gSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLP 168
Cdd:PRK07133 85 -NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 169 TIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGIS 248
Cdd:PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 249 GDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNS-GAESSLELTADEKKALQKVSGITNLE 327
Cdd:PRK07133 244 SNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKtKDNSLLEYYSEEDLEKLKIDDDFAYK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 328 NITKAIKAFSQLDFSSdtASSLSFELALI----DASLDENTVPLPNKPKD-EIPAVKADKPAPLEAPKTAASNNIPTKEP 402
Cdd:PRK07133 324 FIEILFDLLKDLKISD--NPNDTLEILIIkllaLSELEEEDENEIKFKKIeENSIDNLDIKEKKIENENDIEGKSDTKNL 401
|
410
....*....|.
gi 2007572859 403 KTETLTKPNTS 413
Cdd:PRK07133 402 EEGFETKDNKN 412
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
7-293 |
1.27e-100 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 312.85 E-value: 1.27e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMCLSI 86
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG-VEPCNECRACRSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 87 TEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKV 166
Cdd:PRK14962 81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 167 LPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Cdd:PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2007572859 247 ISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYL 293
Cdd:PRK14962 241 LIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDL 287
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
4-476 |
3.73e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 308.41 E-value: 3.73e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTT-------NQGKGEP 76
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRmiddpvyLQEVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 77 CNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIF 156
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 157 ILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQ-IATTYGAE 235
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQvIAFSVGSE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 236 ----ISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQ-IMLVNSGAESSLELT 310
Cdd:PRK14954 241 aekvIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNfLVLYNLRSTRLIERP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 311 ADEKKALQKVSGitnleNITKAIkAFSQLDFSSDTASSLS--------FELALID-ASLDENTVPLPNKPKDEIPAVKAD 381
Cdd:PRK14954 321 ESVKERYQQSAG-----GLTPAA-VMQMTDFLMKTQGELKfqfeyqfrFELALLRlIELVRNDGGVAPSPAGSPDVKKKA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 382 KPAPLEAP-------KTAASNNIPTKEPKTETLTKPNT---SAETAATPKPHTKESAPKLTRAAIPIE------------ 439
Cdd:PRK14954 395 PEPDLPQPdrhpgpaKPEAPGARPAELPSPASAPTPEQqppVARSAPLPPSPQASAPRNVASGKPGVDlgswqgkfmnft 474
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 2007572859 440 EKPKYTAPAPPKEEEKVLIGAGD---IIEQLKVSWKSILD 476
Cdd:PRK14954 475 RNGSRKQPVQASSSDAAQTGVFEgvaELEKLRMEWNQFLE 514
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
4-307 |
2.09e-96 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 299.50 E-value: 2.09e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN-------QGKGEP 76
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMiddadylQEVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 77 CNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIF 156
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 157 ILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQ-IATTYGAE 235
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQvIAFSVESE 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2007572859 236 ----ISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSL 307
Cdd:PRK14955 241 gegsIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRL 316
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
4-296 |
1.85e-95 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 304.87 E-value: 1.85e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKgEPCNTCPMC 83
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-TPCGECDNC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKvLP-TIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYG-AEISLSQV 241
Cdd:PRK07994 160 QK-LPvTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQ-AIASGnGQVTTDDV 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 242 QAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQI 296
Cdd:PRK07994 238 SAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRI 292
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
4-264 |
3.06e-94 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 298.20 E-value: 3.06e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMC 83
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGV-TATPCGVCSAC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGAE-ISLSQVQ 242
Cdd:PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQ-AIAYGGGtVNESEVR 238
|
250 260
....*....|....*....|..
gi 2007572859 243 AALGISGDERIKALAENILKKD 264
Cdd:PRK14969 239 AMLGAIDQDYLFALLEALLAQD 260
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
12-451 |
3.42e-92 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 295.82 E-value: 3.42e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMCLSITEGSS 91
Cdd:PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAP-TGEPCNTCEQCRKVTQGMH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 92 MDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIM 171
Cdd:PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 172 SRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGDE 251
Cdd:PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 252 RIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSL-ELTADEKKALQKVSGITNLEniT 330
Cdd:PRK14959 248 LFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALaSLDLPEDEARQWLGWAKRFE--P 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 331 KAIKAFSQLDFS------SDTASSLSFELALIDASLDENTVPLPNKPKDEIPAVKADKPApLEAPKTAASNNIPTKEPKT 404
Cdd:PRK14959 326 AHIHACWQMTLEgqrrvlTSLEPAMALELLLLNLAMLPRLMPVESLRPSGGGASAPSGSA-AEGPASGGAATIPTPGTQG 404
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 2007572859 405 ETLTKPNTS-AETAATPKPHTKESAPKltrAAIPIEEKPkytaPAPPK 451
Cdd:PRK14959 405 PQGTAPAAGmTPSSAAPATPAPSAAPS---PRVPWDDAP----PAPPR 445
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
4-454 |
4.32e-91 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 295.08 E-value: 4.32e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMC 83
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVCQSC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGA-EISLSQVQ 242
Cdd:PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQ-AIALGSgKVAENDVR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 243 AALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSgAESSLELTADEKKALQKVSG 322
Cdd:PRK08691 239 QMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQA-VPSALAHDDPDSDILHRLAQ 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 323 ITNLENITK----AIKAFSQLDFSSDTASSLSFEL-------ALIDASLDENTVplpnkpkdeIPAVKADKPAPLEAPKT 391
Cdd:PRK08691 318 TISGEQIQLyyqiAVHGKRDLSLAPDEYAGFMMTLlrmlafaPLAAASCDANAV---------IENTELQSPSAQTAEKE 388
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2007572859 392 AASNNiPTKEPKTETLTKP-NTSAETAATPKPHTKESAPKLTRAAIPieekPKYTAPAPPKEEE 454
Cdd:PRK08691 389 TAAKK-PQPRPEAETAQTPvQTASAAAMPSEGKTAGPVSNQENNDVP----PWEDAPDEAQTAA 447
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
7-278 |
1.34e-90 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 288.86 E-value: 1.34e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCttNQG-KGEPCNTCPMCLS 85
Cdd:PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC--EQGpSSTPCDTCIQCQS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 86 ITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHK 165
Cdd:PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 166 VLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGAE-ISLSQVQAA 244
Cdd:PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQ-AIIYCKNaITESKVADM 238
|
250 260 270
....*....|....*....|....*....|....
gi 2007572859 245 LGISGDERIKALAENILKKDiKNGLKTLNAVLAD 278
Cdd:PRK08451 239 LGLLDPSKLEDFFQAILNQD-KEKLFELLKELED 271
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
4-425 |
1.59e-90 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 290.59 E-value: 1.59e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtNQGKGEPCNTCPMC 83
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-NPKDGDCCNSCSVC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243
Cdd:PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDylrqiMLVNsgaessleltadeKKALQKVSGI 323
Cdd:PRK05896 240 TFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLIN-----LLID-------------LLVYQKTKNI 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 324 TNLENITK------AIKAFSQLDFSSDTASSLSFELALIDASldENTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNI 397
Cdd:PRK05896 302 NLLKKLSKeqlktlNLEKQKLLSIEFNTNFLLNNFVSLINRL--KASVNQVFEFEIYLYKIINANPDKLENKKIEISIKP 379
|
410 420 430
....*....|....*....|....*....|
gi 2007572859 398 PTKE--PKTETLTKPNTSAETAATPKPHTK 425
Cdd:PRK05896 380 EKKTinNSQIITTKKINIVEESNKNSVHFD 409
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
10-545 |
1.05e-89 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 293.82 E-value: 1.05e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 10 YRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtnqgKG---EPCNTCPMCLSI 86
Cdd:PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV----EGptsTPCGECDSCVAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 87 -TEGS-SMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIH 164
Cdd:PRK07764 82 aPGGPgSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 165 KVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQ-IAttyGAE---ISLSQ 240
Cdd:PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQlLA---GAGpegVTYER 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 241 VQAALGISG----DERIKALAEnilkKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNS---GAESSL------ 307
Cdd:PRK07764 239 AVALLGVTDsaliDEAVDALAA----GDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAvpdAAERGLvdapad 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 308 ---------------ELT--ADekkalqkvsgITN--LENITKAIKAFSQLDF---------SSDTASSLSFELALIDAS 359
Cdd:PRK07764 315 qldrmraqaqrlgpaELTraAD----------VVNdgLTEMRGATSPRLLLELlcarmllpsASDDERGLLARLERLERR 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 360 L-------------------DENTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNIPTKEPKTETLTKPNTSAETAATP 420
Cdd:PRK07764 385 LgvaggagapaaaapsaaaaAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSA 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 421 KPHTKESAPKLT---RAAIPIEEKPKYTAPAPPKEEEKVliGAGDIIEQLKVSWKSILDQAPdnlKRSAAVAILRSAGVR 497
Cdd:PRK07764 465 QPAPAPAAAPEPtaaPAPAPPAAPAPAAAPAAPAAPAAP--AGADDAATLRERWPEILAAVP---KRSRKTWAILLPEAT 539
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2007572859 498 PVSMDKNIVTLSFKYKYHKDKIEELENRKVTAELISNFVGKTCTLVCI 545
Cdd:PRK07764 540 VLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAV 587
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
4-478 |
1.88e-89 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 295.87 E-value: 1.88e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCttNQG-KGEPCNTCPM 82
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC--EQGvTATPCGVCSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 83 CLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTE 162
Cdd:PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 IHKvLP-TIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGA-EISLSQ 240
Cdd:PRK14949 159 PQK-LPvTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQ-AIAFGGgQVMLTQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 241 VQAALGiSGDER-IKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVN---SGAESSLeltadekka 316
Cdd:PRK14949 237 VQTMLG-SIDEQhVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQfapAAAQQSL--------- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 317 lqkvsgitnlenITKAIKAFSQ--------------------LDFSSDTASSLsfELALIDAsldentVP-LPNKPkdei 375
Cdd:PRK14949 307 ------------YSEQIRAFAEqlspeqvqlyyqilltgrkdLPHAPDPKSGL--EMALLRA------VAfVPEKP---- 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 376 paVK---ADKPAPLEAPKTAASNNIPTKEPKTETLTKPNTSAETAATPKPHTKESAPKLTRAAiPIEEKPKYTAPAP--P 450
Cdd:PRK14949 363 --VKrwqVDDPAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQA-ANAEAVAEADASAepA 439
|
490 500
....*....|....*....|....*...
gi 2007572859 451 KEEEKVLIGAGDIIEQLKVSWKSILDQA 478
Cdd:PRK14949 440 DTVEQALDDESELLAALNAEQAVILSQA 467
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
11-373 |
1.43e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 277.91 E-value: 1.43e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtnqGKGEPcntcpmclsiTEGS 90
Cdd:PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQP---GYDDP----------NEDF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 91 SMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTI 170
Cdd:PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 171 MSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGD 250
Cdd:PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDY 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 251 ERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLV-NSGAESSLELTADEKKALQKVSGITNLENI 329
Cdd:PRK14970 236 DTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSkTPATIALLEVGEQAKKRYEVQSQKVSQSFL 315
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2007572859 330 TKAIKAFSQLD--FSSDTASSLSFELALID-ASLDENTVPLPNKPKD 373
Cdd:PRK14970 316 LSGIDIANDCDlkYKLSKNQRLLVELALMQlASINFDGISAKKKLSD 362
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
12-270 |
1.08e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 269.35 E-value: 1.08e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtNQGKGEPCNTCPMCLSITEGSS 91
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS-NGPTSDPCGTCHNCISIKNSNH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 92 MDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIM 171
Cdd:PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTII 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 172 SRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGDE 251
Cdd:PRK14964 165 SRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKH 244
|
250
....*....|....*....
gi 2007572859 252 RIKALAENILKKDIKNGLK 270
Cdd:PRK14964 245 ILEDLVEAILLGDAQSALN 263
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
4-329 |
1.40e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 265.13 E-value: 1.40e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC----TTNqgkgePCNT 79
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCqngiTSN-----PCRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 80 CPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILA 159
Cdd:PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 160 TTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLS 239
Cdd:PRK14961 156 TTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIK 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 240 QVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAE-SSLELTADEKKALQ 318
Cdd:PRK14961 236 NVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKiWNTIFIKNYKNQIQ 315
|
330
....*....|.
gi 2007572859 319 KVSGITNLENI 329
Cdd:PRK14961 316 KIAQNNKKTNI 326
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
4-453 |
1.87e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 272.36 E-value: 1.87e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKG----EPCNT 79
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGgitaTPCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 80 CPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILA 159
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 160 TTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGA-EISL 238
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQ-AIAFGSgQLQE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 239 SQVQAALGiSGDER-----IKALAEnilkKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQiMLVNSGAESSLELTAD- 312
Cdd:PRK14951 240 AAVRQMLG-SVDRShvfrlIDALAQ----GDGRTVVETADELRLNGLSAASTLEEMAAVLQR-MAVLQAVPQAAAAATDp 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 313 EKKALQKVSGITNLENI----TKAIKAFSQLDFSSDTASSLSFELALIdasldentvpLPNKPKDEIPAVKADKPAPLEA 388
Cdd:PRK14951 314 EAAEVARLAALMPADETqllySICLHGRAELGLAPDEYAALTMVLLRL----------LAFKPAAAAEAAAPAEKKTPAR 383
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 389 PKTAASNNIPTKEPKTETLTKPNTSAETAATPKPHT-----KESAPKLTRAAIPIEEKPKYTAPAPPKEE 453
Cdd:PRK14951 384 PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAaappaPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
4-451 |
7.73e-83 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 272.90 E-value: 7.73e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKG----EPCNT 79
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGgitaQPCGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 80 CPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILA 159
Cdd:PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 160 TTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGA-EISL 238
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQ-AIAYSAgNVSE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 239 SQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLE---LTAD--- 312
Cdd:PRK12323 240 EAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDdwpEADDirr 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 313 -----EKKALQKVSGITNLENITKAIKAFSQLDFSSDTASSLSFEL---------ALIDASLDENTVPLPNKPKDEIPAV 378
Cdd:PRK12323 320 lagrfDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRPgqsgggagpATAAAAPVAQPAPAAAAPAAAAPAP 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2007572859 379 KADKPAPLEAPKTAASNNIPTKEPKTETLTKPNTSAETAATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPK 451
Cdd:PRK12323 400 AAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV 472
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
5-457 |
2.32e-82 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 265.66 E-value: 2.32e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 5 TCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtNQGKGEPCNTCPMCL 84
Cdd:PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIGNEPCNECTSCL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 85 SITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIH 164
Cdd:PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 165 KVLPTIMSRCQRFDFHRVSLV---DMTRKLGKIslaEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQV 241
Cdd:PRK14956 163 KIPETILSRCQDFIFKKVPLSvlqDYSEKLCKI---ENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 242 QAALGISGDERIKALAENILKKD-IKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSlELTADEKKALQKV 320
Cdd:PRK14956 240 RKMIGYHGIEFLTSFIKSLIDPDnHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADR-ESVNFPKEDLQKM 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 321 SgiTNLENITKAI------KAFSQLDFSSDTASSLSFELAL-----IDASLDENTVP----LPNKPKDEIPAVKADKPAP 385
Cdd:PRK14956 319 K--SDFENVDSSKlnflsgKLFEIYEKIKTIRLRNSFEIKVfteiqIKKLVEELTYPslagLLDKINHLILMVQGSKNIP 396
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2007572859 386 LEapkTAASNNIPTKEPKTETLT--KPNTSAETAATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPPKEEEKVL 457
Cdd:PRK14956 397 ED---VEPVKKISTPPPLQQEASkkKDPTTSDQKLNSQFESNQQDSNLDNNPLPSKSESQSEPPSSKFDTSTEI 467
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
7-418 |
3.21e-77 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 255.19 E-value: 3.21e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtnQG-KGEPCNTCPMCLS 85
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA--QGpTATPCGVCESCVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 86 ITEGS--SMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK14952 79 LAPNGpgSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATtyGAEISLSQVQA 243
Cdd:PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA--GAADTHVTYQR 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 244 ALGISG-------DERIKALAENilkkDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNS-----------GAES 305
Cdd:PRK14952 237 ALGLLGatdvaliDDAVDALAAD----DAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAvpdaaargvvdAPED 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 306 SLELTADEKK----------------ALQKVSGITNLENITKAIKAFSQLDFSSDTASSLSFELALIDASLDENTvplpn 369
Cdd:PRK14952 313 VLERMREQAAriglatltryaevvqaGLGEMRGATAPRLLLEVVCARLLLPSASDAESALLQRVERIETRLDMSI----- 387
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 2007572859 370 kPKDEIPAVKADKPAPLEAPktAASNNIPTKEPKTETLTKPNTSAETAA 418
Cdd:PRK14952 388 -PANLLHNAPQAAPAPSAAA--PEPKHQPAPEPRPVLAPTPASGEPNAA 433
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
4-246 |
2.45e-75 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 255.54 E-value: 2.45e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMC 83
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-TSQPCGVCRAC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYGA-EISLSQVQ 242
Cdd:PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQ-AIAYSAnEVTETAVS 238
|
....
gi 2007572859 243 AALG 246
Cdd:PRK07003 239 GMLG 242
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
8-293 |
4.41e-74 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 244.77 E-value: 4.41e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT---TNQGKGEPCNTCPMCL 84
Cdd:PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSaliTENTTIKTCEQCTNCI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 85 SITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIH 164
Cdd:PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 165 KVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQ---IATTYGAEISLSQV 241
Cdd:PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQaasMSAKSDNIISPQVI 249
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2007572859 242 QAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYL 293
Cdd:PRK06645 250 NQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFI 301
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
7-427 |
1.95e-73 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 248.04 E-value: 1.95e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 7 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMCLSI 86
Cdd:PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGV-TSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 87 TEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKV 166
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 167 LPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQiATTYG-AEISLSQVQAAL 245
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ-AIAYGqGAVHHQDVKEML 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 246 GISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLELTADEKKALQKVSGITN 325
Cdd:PRK14960 241 GLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLIS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 326 LENITK----AIKAFSQLDFSsdTASSLSFE------LALIDASLDENTVPLPNKPKDE------IPAVKADKPAPLEA- 388
Cdd:PRK14960 321 AQDLQLyyqiACKGRSDLQLA--VTQEQGFEmcvlrlLAFRPLAPNEILVSEPVQQNGQaevglnSQAQTAQEITPVSAv 398
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2007572859 389 --------PKTAASNNIPTKEPKTETLTKPNTSAETAATPKPHTKES 427
Cdd:PRK14960 399 qpvevisqPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPN 445
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
4-266 |
4.05e-73 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 243.45 E-value: 4.05e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMC 83
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGV-TAEPCNKCENC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK14957 80 VAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243
Cdd:PRK14957 160 HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQ 239
|
250 260
....*....|....*....|...
gi 2007572859 244 ALGISGDERIKALAENILKKDIK 266
Cdd:PRK14957 240 MLGIIDSEEVYSIINAIIDNDPK 262
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
4-417 |
2.78e-62 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 213.44 E-value: 2.78e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 4 MTCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQgKGEPCNTCPMC 83
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGV-SANPCNDCENC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 84 LSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEI 163
Cdd:PRK14958 80 REIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 164 HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQA 243
Cdd:PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 244 ALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLELTADEKKALQKVSGI 323
Cdd:PRK14958 240 MLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDR 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 324 TNLEnITKAIKAFSQLDFSSDTASSLSFELALIDasldentvplpnkpkdeipavkadkpapLEAPKTAASNNIPTKEPK 403
Cdd:PRK14958 320 EDVQ-LFYQIGLIGQRDLAYSPTPQTGFEMTLLR----------------------------MLAFYPSAANAIPETESK 370
|
410
....*....|....
gi 2007572859 404 TETLTKPNTSAETA 417
Cdd:PRK14958 371 EAVVTPTPKSSETS 384
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
24-296 |
4.35e-60 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 200.97 E-value: 4.35e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 24 QEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPmCLSITEGSSMDIIEI--DAAS 101
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEG-GKACGQCH-SRLMAAGNHPDLLELnpEEKS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 102 NT-GVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFH 180
Cdd:COG0470 79 DQiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 181 RVSLVDMTRKLGKislaEGinVEPEALKLIARSAGGSFRDGENLLQQIATtyGAEIslsqVQAALGISGDERIKALAENI 260
Cdd:COG0470 159 PPSEEEALAWLRE----EG--VDEDALEAILRLAGGDPRAAINLLQALAG--RKEL----LEDLAALLSRDRALELLDAL 226
|
250 260 270
....*....|....*....|....*....|....*.
gi 2007572859 261 LKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQI 296
Cdd:COG0470 227 LKAEALELLDWLLKWLLDNLPLEYAGEDLARAYEAL 262
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
29-219 |
1.24e-55 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 185.52 E-value: 1.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 29 HTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMCLSITEGSSMDIIEIDAASNT-GVDD 107
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGG-GEPCGECHSCRLIEAGNHPDLHRLEPEGQSiKVDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 108 IRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDM 187
Cdd:TIGR00678 81 VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEAL 160
|
170 180 190
....*....|....*....|....*....|..
gi 2007572859 188 TRKLgkislaEGINVEPEALKLIARSAGGSFR 219
Cdd:TIGR00678 161 LQWL------IRQGISEEAAELLLALAGGSPG 186
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
23-183 |
4.78e-55 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 183.18 E-value: 4.78e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 23 GQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTtNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASN 102
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCE-EPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 103 T-GVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHR 181
Cdd:pfam13177 80 SiKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
..
gi 2007572859 182 VS 183
Cdd:pfam13177 160 LS 161
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
16-226 |
1.23e-40 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 150.08 E-value: 1.23e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 16 QTLADLvgQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMCLSITEGSSMDII 95
Cdd:PRK08058 5 EQLTAL--QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG-VEPCGTCTNCKRIDSGNHPDVH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 96 EI--DAASnTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSR 173
Cdd:PRK08058 82 LVapDGQS-IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2007572859 174 CQRFDFHRVSLVDMTRKLgkisLAEGInvePEALKLIARSAGGSFRDGENLLQ 226
Cdd:PRK08058 161 CQVVEFRPLPPESLIQRL----QEEGI---SESLATLLAGLTNSVEEALALSE 206
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
20-216 |
4.94e-33 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 130.42 E-value: 4.94e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 20 DLVGQEHVAHTLKNALSSGR---------IAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGepCNTCPMCLSITEGS 90
Cdd:PRK07940 6 DLVGQEAVVAELRAAARAARadvaaagsgMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPG--CGECRACRTVLAGT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 91 SMDIIEIDAASNT-GVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPT 169
Cdd:PRK07940 84 HPDVRVVAPEGLSiGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2007572859 170 IMSRCQrfdfhRVSL----VDMTRKLgkisLAEGINVEPEALKLIARSAGG 216
Cdd:PRK07940 164 IRSRCR-----HVALrtpsVEAVAEV----LVRRDGVDPETARRAARASQG 205
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
12-294 |
2.50e-30 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 121.63 E-value: 2.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSSGrIAQAYLFCGPRGTGKTSTGRILAKAV------NCTT--------NQGKGEpc 77
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELygdpweNNFTefnvadffDQGKKY-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 78 ntcpmcLSITEGSSMdIIEIDAASNTGVDDI--RELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVI 155
Cdd:PRK12402 85 ------LVEDPRFAH-FLGTDKRIRSSKIDNfkHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 156 FILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGEnLLQQIATTYGAE 235
Cdd:PRK12402 158 FIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQTAALAAGE 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007572859 236 ISLSQVQAALGISG-DERIKALAENILKKDIKNGLKTLNAVLAD-GLDLKQFRRELLDYLR 294
Cdd:PRK12402 237 ITMEAAYEALGDVGtDEVIESLLDAAEAGDFTDARKTLDDLLIDeGLSGGEVLEELLRVAR 297
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
19-217 |
2.10e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 115.38 E-value: 2.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 19 ADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCttnqgkGEPCNTCPMCLsITEGSSMDIIEI- 97
Cdd:PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS------QGSPSKNIRRR-LEEGNHPDLLWVe 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 98 ------------DAASNTGV----------DDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEpPPRVI 155
Cdd:PRK07399 77 ptyqhqgklitaSEAEEAGLkrkappqirlEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGT 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2007572859 156 FILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEAlkLIArSAGGS 217
Cdd:PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPE--LLA-LAQGS 214
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
12-291 |
2.81e-28 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 115.36 E-value: 2.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQaYLFCGPRGTGKTSTGRILAKAVncttnqgkgepcntcpmclsITEGSS 91
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALAREL--------------------YGEDWR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 92 MDIIEIDAASNTGVDDIRE-LKEKVQYSPS-LANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPT 169
Cdd:PRK00440 69 ENFLELNASDERGIDVIRNkIKEFARTAPVgGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 170 IMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLqQIATTYGAEISLSQVQAALGISG 249
Cdd:PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTAR 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2007572859 250 DERIKALAENILKKDIKNGLKTLNAVLAD----GLDL-KQFRRELLD 291
Cdd:PRK00440 228 PEEIREMIELALNGDFTEAREKLRDLMIDyglsGEDIiKQIHREVWS 274
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
14-246 |
5.72e-28 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 116.34 E-value: 5.72e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 14 RPQTLADLVGQEHVAHT---LKNALSSGRIAQAyLFCGPRGTGKTSTGRILAKAVNCttnqgkgepcntcpmclsitegs 90
Cdd:PRK13342 7 RPKTLDEVVGQEHLLGPgkpLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDA----------------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 91 smDIIEIDAAsNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEppPRVIFILATTE--IHKVLP 168
Cdd:PRK13342 63 --PFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSFEVNP 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 169 TIMSRCQRFDFHRVSLVDMtRKLGKISLAE----GINVEPEALKLIARSAGGSFRDGENLLQQIATTyGAEISLSQVQAA 244
Cdd:PRK13342 138 ALLSRAQVFELKPLSEEDI-EQLLKRALEDkergLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEA 215
|
..
gi 2007572859 245 LG 246
Cdd:PRK13342 216 LQ 217
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
15-302 |
1.72e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 107.82 E-value: 1.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 15 PQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTS-----TGRILAKAVNCTTNQGKGEPCNTCPMCLSITEG 89
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATlafhlANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 90 SSMDIIEIDAASN--TG-------VDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILAT 160
Cdd:PRK09112 99 AHPNLLHITRPFDekTGkfktaitVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 161 TEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLgkISLAEGINVEPEALKLIARSAGGSFRDGENLLQqiattYGaeislsq 240
Cdd:PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKAL--SHLGSSQGSDGEITEALLQRSKGSVRKALLLLN-----YG------- 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007572859 241 vqaalgisGDERIKALaENILKKDIKNGLKTLNavLADGLDLK-------QFRRELLDYL--RQIMLVNSG 302
Cdd:PRK09112 245 --------GLEIIATI-DQLLAGSGPDARKAHK--LADALSGResevqfdFFRDHLLDRImaEARRAAEAG 304
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
35-179 |
2.44e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 107.10 E-value: 2.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 35 LSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMCLSITEGSSMD--IIEIDAASNT-GVDDIREL 111
Cdd:PRK05707 16 AGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-GGACGSCKGCQLLRAGSHPDnfVLEPEEADKTiKVDQVREL 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2007572859 112 KEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDF 179
Cdd:PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
14-217 |
1.12e-24 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 105.88 E-value: 1.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 14 RPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQG---KGEPCNTC------PMCL 84
Cdd:PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGgdgAVPPPTSLaidpdhPVAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 85 SITEGSSMDIIEIDAASNTG---------VDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVI 155
Cdd:PRK07471 94 RIAAGAHGGLLTLERSWNEKgkrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2007572859 156 FILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGkislAEGINVEPEALKLIARSAGGS 217
Cdd:PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALA----AAGPDLPDDPRAALAALAEGS 231
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
25-180 |
5.86e-24 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 102.89 E-value: 5.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 25 EHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMCLSITEGSSMDIIEIDAASNT- 103
Cdd:PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQAGNHPDFHILEPIDNKd 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2007572859 104 -GVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFH 180
Cdd:PRK06871 87 iGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
39-177 |
6.15e-24 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 102.64 E-value: 6.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 39 RIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASN----------TGVDDI 108
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDepengrkllqIKIDAV 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2007572859 109 RELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRF 177
Cdd:PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
39-177 |
1.11e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 102.53 E-value: 1.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 39 RIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMCLSITEGSSMD-------IIEIDAASNTG------- 104
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDyrivrpeALAAEAPGAADeakeada 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 105 ---------------VDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPT 169
Cdd:PRK06964 99 deggkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
....*...
gi 2007572859 170 IMSRCQRF 177
Cdd:PRK06964 179 ILSRCRQF 186
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
31-177 |
1.66e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 101.42 E-value: 1.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 31 LKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQGkgEPCNTCPMCLSITEGSSMDI----IEIDAASNTgVD 106
Cdd:PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHPDLhvikPEKEGKSIT-VE 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007572859 107 DIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRF 177
Cdd:PRK06090 92 QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
14-246 |
6.81e-23 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 101.67 E-value: 6.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 14 RPQTLADLVGQEHVAH---TLKNALSSGRIAQAyLFCGPRGTGKTSTGRILAKAVNcttnqgkgepcntcpmclsitegs 90
Cdd:COG2256 20 RPRTLDEVVGQEHLLGpgkPLRRAIEAGRLSSM-ILWGPPGTGKTTLARLIANATD------------------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 91 sMDIIEIDAASnTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEppPRVIFILATTE--IHKVLP 168
Cdd:COG2256 75 -AEFVALSAVT-SGVKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSFEVNS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 169 TIMSRCQRFDFHRVS-----------LVDMTRKLGKislaEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGA--- 234
Cdd:COG2256 151 ALLSRCRVFVLKPLSeedleqlleraLADDERGLGG----YKLELDDEALEALARLADGDARRALNALELAVLSAPPdgv 226
|
250
....*....|...
gi 2007572859 235 -EISLSQVQAALG 246
Cdd:COG2256 227 iEITLELVEEALQ 239
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
20-356 |
1.71e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 92.40 E-value: 1.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 20 DLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTstgrILAKAvncttnqgkgepcntcpMCLSITEGSSM----DII 95
Cdd:PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKS----LLAKE-----------------IALKILGKSQQreyvDII 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 96 E--IDAASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSR 173
Cdd:PRK05564 64 EfkPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 174 CQRFDFHRVSLVDMTRKLGKisLAEGINVEpEALKLIARSAGGSFRdgenllqqiATTYGAEISLSQVQaalgisgDERI 253
Cdd:PRK05564 144 CQIYKLNRLSKEEIEKFISY--KYNDIKEE-EKKSAIAFSDGIPGK---------VEKFIEDDSLKNIR-------NMSL 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 254 KALaENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESSLELTADEKKALQKVSGI---TNLENIT 330
Cdd:PRK05564 205 EIL-KDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKfsyKKLNKMI 283
|
330 340
....*....|....*....|....*.
gi 2007572859 331 KAIKaFSQLDFSSDTASSLSFELALI 356
Cdd:PRK05564 284 EIIN-DTRDNLSSNVNPTLVFDSMLI 308
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
8-297 |
1.43e-16 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 80.80 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 8 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTStgriLAKAVncttnqgkgepCNtcpmclsit 87
Cdd:PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTT----VAKAL-----------CN--------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 88 egssmdiiEIDA------ASNTGVDDIRElkEKVQYSPSL---ANYKVYIIDEVHMLSNSASNALLKTL-EEPPPRVIFI 157
Cdd:PHA02544 66 --------EVGAevlfvnGSDCRIDFVRN--RLTRFASTVsltGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFI 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 158 LATTEIHKVLPTIMSRCQRFDFH------RVSLV-DMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIAT 230
Cdd:PHA02544 136 ITANNKNGIIEPLRSRCRVIDFGvptkeeQIEMMkQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS 215
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2007572859 231 TygAEISlsqvQAALGISGDERIKALAENILKKDIKNgLKTLNAVLADglDLKQFRRELLDYLRQIM 297
Cdd:PHA02544 216 T--GKID----AGILSEVTNSDIDDVVEALKAKDFKA-VRALAPNYAN--DYASFVGKLYDELYPQV 273
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
12-246 |
4.74e-16 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 80.74 E-value: 4.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSS---GRIAQAYLFCGPRGTGKTSTGRILAKAVNcttnqgkgepcntcpmclsite 88
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESwlkGKPKKALLLYGPPGVGKTSLAHALANDYG---------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 89 gssMDIIEIDAASNTGVDDIRELKEKVQYSPSL--ANYKVYIIDEVHMLSNSA----SNALLKTLEEPppRVIFILATTE 162
Cdd:PRK04195 65 ---WEVIELNASDQRTADVIERVAGEAATSGSLfgARRKLILLDEVDGIHGNEdrggARAILELIKKA--KQPIILTAND 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 IHKV-LPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGaEISLSQV 241
Cdd:PRK04195 140 PYDPsLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYG-KLTLEDV 218
|
....*
gi 2007572859 242 QAALG 246
Cdd:PRK04195 219 KTLGR 223
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
35-276 |
5.43e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 78.52 E-value: 5.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 35 LSSGRIAQAYLFCGprGTGKTSTGRILAKAVNCTTNQGkGEPCNTCPMCLSITEGSSMDIIEIDAASNT-GVDDIRELKE 113
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEG-VLPCGHCRSCRLIEQGEFSDVTVIEPQGQViKTDTIRELVK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 114 KVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDF--HRVSLVDMTRKL 191
Cdd:PRK07276 95 NFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFpkNEAYLIQLLEQK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 192 GKIS-----LAEGINVEPEALKLIARSaggSFRDGENLLQQIATTYGAEISLSQ------VQAALGISGDERIKALAENI 260
Cdd:PRK07276 175 GLLKtqaelLAKLAQSTSEAEKLAQNK---KFLELIDQAERFVTILLKDKDEAYlqvarlVQLADEKEEQDQVLTLLTLL 251
|
250
....*....|....*...
gi 2007572859 261 LKKDI--KNGLKTLNAVL 276
Cdd:PRK07276 252 LAQERmqVNVRTQLEAVY 269
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
34-179 |
5.80e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 79.23 E-value: 5.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 34 ALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVnctTNQGKGEPCNTCPMCLsITEGSSMDIIEIDAASN-TG-------- 104
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVALALAEHV---LASGPDPAAAQRTRQL-IAAGTHPDLQLVSFIPNrTGdklrteiv 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 105 VDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDF 179
Cdd:PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
107-183 |
7.82e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 78.23 E-value: 7.82e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2007572859 107 DIRELKEKVQYSPSLAN-YKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVS 183
Cdd:PRK07132 73 EFLSAINKLYFSSFVQSqKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
12-233 |
1.59e-15 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 77.85 E-value: 1.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQaYLFCGPRGTGKTStgrilakAVNCTTNQGKGEpcntcpmclSITEGss 91
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTT-------SILALAHELLGP---------NYKEA-- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 92 mdIIEIDAASNTGVDDIRE-----LKEKVQYSPslANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKV 166
Cdd:PLN03025 67 --VLELNASDDRGIDVVRNkikmfAQKKVTLPP--GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKI 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2007572859 167 LPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYG 233
Cdd:PLN03025 143 IEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG 209
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
14-226 |
5.74e-14 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 75.09 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 14 RPQTLADLVGQEHV---AHTLKNALSSGRIAQAyLFCGPRGTGKTSTGRILAKAVNCttnqgkgepcntcpmclsitEGS 90
Cdd:PRK13341 23 RPRTLEEFVGQDHIlgeGRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRA--------------------HFS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 91 SMDiieidaASNTGVDDIR-ELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPprVIFILATTE--IHKVL 167
Cdd:PRK13341 82 SLN------AVLAGVKDLRaEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT--ITLIGATTEnpYFEVN 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 168 PTIMSRCQRF--------DFHRV---SLVDMTRKLGKISlaegINVEPEALKLIARSAGGSFRDGENLLQ 226
Cdd:PRK13341 154 KALVSRSRLFrlkslsdeDLHQLlkrALQDKERGYGDRK----VDLEPEAEKHLVDVANGDARSLLNALE 219
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
22-176 |
1.64e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 68.33 E-value: 1.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 22 VGQEHVAHTLKNALSSgRIAQAYLFCGPRGTGKTSTGRILAKAVncttnqgkgepcntcpmclsitEGSSMDIIEIDAAS 101
Cdd:cd00009 1 VGQEEAIEALREALEL-PPPKNLLLYGPPGTGKTTLARAIANEL----------------------FRPGAPFLYLNASD 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 102 NTGVDDIRELKEKVQYS-----PSLANYKVYIIDEVHMLSNSASNALLKTLEE------PPPRVIFILATT--EIHKVLP 168
Cdd:cd00009 58 LLEGLVVAELFGHFLVRllfelAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDR 137
|
....*...
gi 2007572859 169 TIMSRCQR 176
Cdd:cd00009 138 ALYDRLDI 145
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
63-177 |
2.52e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 70.25 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 63 KAVNCTTNQGkgePCNTCPMCLSITEGSSMDIIEI-DAASNTGVDDIRELKEKVQY-SPSLANYKVYIIDEVHMLSNSAS 140
Cdd:PRK05818 29 TSIVCTKANG---FCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINKLNRpSVESNGKKIYIIYGIEKLNKQSA 105
|
90 100 110
....*....|....*....|....*....|....*..
gi 2007572859 141 NALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRF 177
Cdd:PRK05818 106 NSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
101-226 |
1.19e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 69.32 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 101 SNTGVDDIRELKEKVqYSPS-LANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCqrFDF 179
Cdd:PRK07993 86 SSLGVDAVREVTEKL-YEHArLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC--RLH 162
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2007572859 180 HrvsLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQ 226
Cdd:PRK07993 163 Y---LAPPPEQYALTWLSREVTMSQDALLAALRLSAGAPGAALALLQ 206
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
93-229 |
1.89e-12 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 70.25 E-value: 1.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 93 DIIEIDAASNTGVDDIRE-LKEKVQYSP-SLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTI 170
Cdd:PRK04132 598 NFLELNASDERGINVIREkVKEFARTKPiGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2007572859 171 MSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIA 229
Cdd:PRK04132 678 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA 736
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
182-246 |
1.94e-12 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 62.52 E-value: 1.94e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 182 VSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALG 246
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
86-343 |
3.36e-12 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 67.59 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 86 ITEGSSMDIIEIDAASntgvDDIRELKEKVQySPSL-ANYKVYIIDEVHMLS--NSASNALLKTLEEPPPRVIFILATTE 162
Cdd:COG1466 29 LAEDDGFNRTRLDGAE----TDWAELLDEAQ-TLSLfGERRLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 163 I---HKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGA--EIS 237
Cdd:COG1466 104 LdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALYAGDggTIT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 238 LSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAES--SLELTADE-- 313
Cdd:COG1466 184 LEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLAEGEEPVLILAALARQFRLLLQVKALLAQgkSLAEIAKElg 263
|
250 260 270
....*....|....*....|....*....|....*.
gi 2007572859 314 ------KKALQKVSGITnLENITKAIKAFSQLDFSS 343
Cdd:COG1466 264 vppfrvKLALRALRRWS-LERLARALQLLAEADLAL 298
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
109-174 |
2.99e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 64.43 E-value: 2.99e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2007572859 109 RELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174
Cdd:PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
236-356 |
5.04e-11 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 60.75 E-value: 5.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 236 ISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVNSGAESS--LELTADE 313
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPDAAddLLLPEEE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2007572859 314 KKALQKVSGITNLENITKA----IKAFSQLDFSSDTASSLsfELALI 356
Cdd:pfam12169 81 RARLAELAEKLSPEVLHRLwqmlLKGIEEVPNAPDPRQAA--EMVLL 125
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
44-177 |
1.71e-10 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 58.76 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 44 YLFCGPRGTGKTSTGRILAKAVNcttnqgkgepcntcpmclsitegssMDIIEIDAASNT------GVDDIRE-LKEKVQ 116
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG-------------------------APFIEISGSELVskyvgeSEKRLRElFEAAKK 55
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 117 YSPSlanykVYIIDEVHMLSNSAS-----------NALLKTLEEP---PPRVIFILATTEIHKVLPTIMSRCQRF 177
Cdd:pfam00004 56 LAPC-----VIFIDEIDALAGSRGsggdsesrrvvNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRI 125
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
42-180 |
7.99e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.69 E-value: 7.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 42 QAYLFCGPRGTGKTSTGRILAKAVNCTtnQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSpsl 121
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL--- 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2007572859 122 aNYKVYIIDEVHMLSNSASNALL--------KTLEEPPPRVIFILATTEIHKVLPTIMSRcqRFDFH 180
Cdd:smart00382 78 -KPDVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRR 141
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
11-229 |
1.09e-08 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 57.23 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 11 RKWRPQTLADLVGQEHVAHTLKNA----LSSGRIAQAY--------LFCGPRGTGKTSTGRILAKAVNcttnqgkgepcn 78
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELvalpLKRPELREEYglppprglLLYGPPGTGKTLLARALAGELG------------ 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 79 tcpmclsitegssMDIIEIDAAS-----------NtgvddIRELKEKV-QYSPSlanykVYIIDEVHML----------- 135
Cdd:COG0464 217 -------------LPLIEVDLSDlvskyvgetekN-----LREVFDKArGLAPC-----VLFIDEADALagkrgevgdgv 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 136 SNSASNALLKTLEEPPPRVIFILATTEIHKvLPTIMSRcqRFDFH----------RVSLVDmtRKLGKISLAEGINVEpe 205
Cdd:COG0464 274 GRRVVNTLLTEMEELRSDVVVIAATNRPDL-LDPALLR--RFDEIiffplpdaeeRLEIFR--IHLRKRPLDEDVDLE-- 346
|
250 260
....*....|....*....|....
gi 2007572859 206 alKLIARSAGGSFRDGENLLQQIA 229
Cdd:COG0464 347 --ELAEATEGLSGADIRNVVRRAA 368
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
100-174 |
2.33e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 52.54 E-value: 2.33e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 100 ASNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC 140
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
126-198 |
8.13e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 50.03 E-value: 8.13e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 126 VYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDfHRVSLVDMTRKLG--KISLAE 198
Cdd:PRK08485 57 KIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEK-RKQKKPVKPLDLDlkKLDLKD 130
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
18-225 |
1.93e-06 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 49.50 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 18 LADLVGQEHVAHTLKNALSSGRIAQAY-----------LFCGPRGTGKTSTGRILAKA-------VNCTTnqgkgepcnt 79
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKELRRRENLrkfglwpprkiLFYGPPGTGKTMLAEALAGElklplltVRLDS---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 80 cpmcLSiteGSSMDiieiDAASNtgvddIRELKEKVQYSPSlanykVYIIDEVHMLSNSAS------------NALLKTL 147
Cdd:COG1223 71 ----LI---GSYLG----ETARN-----LRKLFDFARRAPC-----VIFFDEFDAIAKDRGdqndvgevkrvvNALLQEL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 148 EEPPPRVIFILATTEIHKVLPTIMSRCQ---RFD-FHRVSLVDMTRKLGKislAEGINVEPEALKLIARSAGGSFRDGEN 223
Cdd:COG1223 130 DGLPSGSVVIAATNHPELLDSALWRRFDeviEFPlPDKEERKEILELNLK---KFPLPFELDLKKLAKKLEGLSGADIEK 206
|
..
gi 2007572859 224 LL 225
Cdd:COG1223 207 VL 208
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
44-180 |
2.89e-06 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 47.28 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 44 YLFCGPRGTGKTStgriLAKAVncttnqgkgepCNTCPMCLSITEGSSMdiieIDAASNTGVDDIRELKEKV-QYSPSla 122
Cdd:cd19481 29 ILLYGPPGTGKTL----LAKAL-----------AGELGLPLIVVKLSSL----LSKYVGESEKNLRKIFERArRLAPC-- 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2007572859 123 nykVYIIDEVHMLS------------NSASNALLKTLEEPPPR--VIFILATTEIHKVLPTIMsRCQRFDFH 180
Cdd:cd19481 88 ---ILFIDEIDAIGrkrdssgesgelRRVLNQLLTELDGVNSRskVLVIAATNRPDLLDPALL-RPGRFDEV 155
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
14-72 |
3.44e-06 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 49.36 E-value: 3.44e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 14 RPQTLADLVGQEHVAHTLKNALSSGRIAQA----YLFCGPRGTGKTSTGRILAK--AVNCTTNQG 72
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEaldhVLLYGPPGLGKTTLANIIANemGVNIRITSG 84
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
12-58 |
2.12e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 47.53 E-value: 2.12e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2007572859 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQaYLFCGPRGTGKTSTG 58
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKCLTG 57
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
14-72 |
3.42e-05 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 44.41 E-value: 3.42e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007572859 14 RPQTLADLVGQEHVAHTLKNALSSGRIAQA----YLFCGPRGTGKTSTGRILAKA--VNCTTNQG 72
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKQRGEaldhVLLYGPPGLGKTTLANIIANEmgVNIRITSG 66
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
187-245 |
3.61e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 41.69 E-value: 3.61e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 187 MTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQ-IATTYGAEISLSQVQAAL 245
Cdd:cd18133 6 LKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRaAALGDDGKISLDRVYQAV 65
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
41-167 |
3.94e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.48 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 41 AQAYLFCGPRGTGKTSTGRILAKavncttnqgkgEPCNTCPMCLSITEGSSMDIIEI--DAASNTGVD-----DIRELKE 113
Cdd:pfam13401 5 AGILVLTGESGTGKTTLLRRLLE-----------QLPEVRDSVVFVDLPSGTSPKDLlrALLRALGLPlsgrlSKEELLA 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2007572859 114 KV-QYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILA-TTEIHKVL 167
Cdd:pfam13401 74 ALqQLLLALAVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILVgTPELRELL 129
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
182-243 |
4.98e-04 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 38.66 E-value: 4.98e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2007572859 182 VSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGaEISLSQVQA 243
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAGGG-VITEEDVYE 61
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
14-63 |
7.28e-04 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 41.99 E-value: 7.28e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 2007572859 14 RPQTLADLVGQEHVAHTLKNALSSGRIAQA----YLFCGPRGTGKTSTGRILAK 63
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKKRGEaldhVLLYGPPGLGKTTLAHIIAN 76
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
135-287 |
1.25e-03 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 41.09 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 135 LSNSASNALLKTLEEPPPRVIFILATTEIHK-----VLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEALKL 209
Cdd:TIGR01128 59 PGAKGLKALEEYLANPPPDTLLLIEAPKLDKrkkltKWLKALKNAEIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 210 IARSAGGSFRDGENLLQQIATTY-GAEISLSQVQAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLD------- 281
Cdd:TIGR01128 139 LAELVEGNLLAIAQELEKLALYApDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEplillal 218
|
....*..
gi 2007572859 282 -LKQFRR 287
Cdd:TIGR01128 219 lQRQLRL 225
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
366-455 |
2.51e-03 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 40.52 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 366 PLPNKPKDEIPAvKADKPAP-----LEAPKTAASNNIPTKEP--KTETLTKPNTSAETAATPKPHTKESAPKLTRAAIPI 438
Cdd:NF033839 334 PQPEKPKPEVKP-QLETPKPevkpqPEKPKPEVKPQPEKPKPevKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQ 412
|
90 100
....*....|....*....|
gi 2007572859 439 EEKPK---YTAPAPPKEEEK 455
Cdd:NF033839 413 PEKPKpevKPQPEKPKPEVK 432
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
366-455 |
4.52e-03 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 39.75 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007572859 366 PLPNKPKDEIPAvKADKPAP-----LEAPK--TAASNNIPTKEPKTETLTKPNTSAETAATPKPHTKESAPKLTRAAIPI 438
Cdd:NF033839 367 PQPEKPKPEVKP-QPETPKPevkpqPEKPKpeVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQ 445
|
90
....*....|....*..
gi 2007572859 439 EEKPKYTAPAPPKEEEK 455
Cdd:NF033839 446 PEKPKPEVKPQPETPKP 462
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
47-68 |
9.88e-03 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 37.15 E-value: 9.88e-03
|
| |
