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Conserved domains on  [gi|2086491174|gb|QZL34221|]
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cytochrome b, partial (mitochondrion) [Hylomyscus heinrichorum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-49 6.63e-28

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 101.25  E-value: 6.63e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00100  223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-49 6.63e-28

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 101.25  E-value: 6.63e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00100  223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-49 4.84e-14

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 61.12  E-value: 4.84e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:cd00290    17 YFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPE 65
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-49 5.57e-10

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 51.71  E-value: 5.57e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLlsDPDNYTPANPLNTPPHIKPE 49
Cdd:COG1290   239 YYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPD 285
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
36-49 1.31e-03

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 33.22  E-value: 1.31e-03
                          10
                  ....*....|....
gi 2086491174  36 PANPLNTPPHIKPE 49
Cdd:pfam00032   1 PANPLVTPAHIVPE 14
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-49 6.63e-28

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 101.25  E-value: 6.63e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00100  223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPE 271
CYTB MTH00191
cytochrome b; Provisional
 1-49 9.36e-22

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 84.58  E-value: 9.36e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00191  220 YFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPE 268
CYTB MTH00119
cytochrome b; Provisional
 1-49 1.02e-21

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 84.57  E-value: 1.02e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00119  224 YFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPE 272
CYTB MTH00156
cytochrome b; Provisional
 1-49 5.36e-20

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 79.83  E-value: 5.36e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00156  213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPE 261
CYTB MTH00145
cytochrome b; Provisional
 1-49 5.37e-20

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 79.95  E-value: 5.37e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00145  224 YYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPE 272
CYTB MTH00131
cytochrome b; Provisional
 1-49 9.66e-20

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 79.31  E-value: 9.66e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00131  223 YFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPE 271
CYTB MTH00074
cytochrome b; Provisional
 1-49 1.33e-18

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 76.26  E-value: 1.33e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00074  224 YFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPE 272
CYTB MTH00016
cytochrome b; Validated
 1-49 7.30e-18

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 73.94  E-value: 7.30e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00016  224 YYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPE 272
CYTB MTH00034
cytochrome b; Validated
 1-49 8.26e-18

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 73.97  E-value: 8.26e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00034  223 YFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPE 271
CYTB MTH00224
cytochrome b; Provisional
 1-49 4.06e-15

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 66.48  E-value: 4.06e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00224  224 YYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPE 272
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-49 4.84e-14

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 61.12  E-value: 4.84e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:cd00290    17 YFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPE 65
CYTB MTH00053
cytochrome b; Provisional
 1-49 2.17e-13

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 61.65  E-value: 2.17e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00053  224 YYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPE 272
CYTB MTH00022
cytochrome b; Validated
 1-49 5.50e-12

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 57.40  E-value: 5.50e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00022  222 YYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPE 270
CYTB MTH00046
cytochrome b; Validated
 1-49 1.36e-10

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 53.45  E-value: 1.36e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00046  215 YFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPE 263
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-49 5.57e-10

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 51.71  E-value: 5.57e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGVILMILFLMTLVLFFPDLlsDPDNYTPANPLNTPPHIKPE 49
Cdd:COG1290   239 YYTVKDGFGFFVFLGVFALLAFFFPIN--PPPNYGPANPLATPAHIQPD 285
CYTB MTH00033
cytochrome b; Provisional
 1-49 4.10e-07

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 43.77  E-value: 4.10e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2086491174   1 YYTIKDILGVILMILFLMTLVL--FFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00033  220 YFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPE 270
CYTB MTH00086
cytochrome b; Provisional
 1-49 5.61e-07

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 43.39  E-value: 5.61e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2086491174   1 YYTIKDILGvILMILFLMTLVLFFPDLLSDPDNYTPANPLNTPPHIKPE 49
Cdd:MTH00086  212 EYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPE 259
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
36-49 1.31e-03

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 33.22  E-value: 1.31e-03
                          10
                  ....*....|....
gi 2086491174  36 PANPLNTPPHIKPE 49
Cdd:pfam00032   1 PANPLVTPAHIVPE 14
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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