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Conserved domains on  [gi|2125200440]
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Chain H, Cytochrome c oxidase polypeptide 4

Protein Classification

cytochrome c oxidase subunit 4( domain architecture ID 10573921)

cytochrome c oxidase subunit 4 is required for assembly and/or stability of the cytochrome c oxidase complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cyt_c_ox_IV pfam12270
Cytochrome c oxidase subunit IV; This family of proteins is found in bacteria. Proteins in ...
 1-138 1.64e-42

Cytochrome c oxidase subunit IV; This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex.


:

Pssm-ID: 432441  Cd Length: 132  Bit Score: 136.93  E-value: 1.64e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125200440   1 MHIEARLFEILTAFFALAAVVYAVLTAMFatggvEWAGTTALVLTTGLTLITGTFFRFVARRLDTRPEDYEDAEISDGAG 80
Cdd:pfam12270   1 MKVEAKLFGGLAVFFVLVAVVYGFWTLWQ-----EPVGTTALVLTGGLALMIGFYLAFVARRIDPRPEDREDAEIADGAG 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2125200440  81 ELGFFAPHSWWPILISLSFSTAAVGAALwLPWLIAAGVAFVITSVCGLVFEYYWGPEK 138
Cdd:pfam12270  76 ELGFFSPHSWWPLVLAAAAALAFLGLAF-GWWLLIIGVVLGLIALVGWVFEYYRGEHA 132
 
Name Accession Description Interval E-value
Cyt_c_ox_IV pfam12270
Cytochrome c oxidase subunit IV; This family of proteins is found in bacteria. Proteins in ...
 1-138 1.64e-42

Cytochrome c oxidase subunit IV; This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex.


Pssm-ID: 432441  Cd Length: 132  Bit Score: 136.93  E-value: 1.64e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125200440   1 MHIEARLFEILTAFFALAAVVYAVLTAMFatggvEWAGTTALVLTTGLTLITGTFFRFVARRLDTRPEDYEDAEISDGAG 80
Cdd:pfam12270   1 MKVEAKLFGGLAVFFVLVAVVYGFWTLWQ-----EPVGTTALVLTGGLALMIGFYLAFVARRIDPRPEDREDAEIADGAG 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2125200440  81 ELGFFAPHSWWPILISLSFSTAAVGAALwLPWLIAAGVAFVITSVCGLVFEYYWGPEK 138
Cdd:pfam12270  76 ELGFFSPHSWWPLVLAAAAALAFLGLAF-GWWLLIIGVVLGLIALVGWVFEYYRGEHA 132
 
Name Accession Description Interval E-value
Cyt_c_ox_IV pfam12270
Cytochrome c oxidase subunit IV; This family of proteins is found in bacteria. Proteins in ...
 1-138 1.64e-42

Cytochrome c oxidase subunit IV; This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex.


Pssm-ID: 432441  Cd Length: 132  Bit Score: 136.93  E-value: 1.64e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125200440   1 MHIEARLFEILTAFFALAAVVYAVLTAMFatggvEWAGTTALVLTTGLTLITGTFFRFVARRLDTRPEDYEDAEISDGAG 80
Cdd:pfam12270   1 MKVEAKLFGGLAVFFVLVAVVYGFWTLWQ-----EPVGTTALVLTGGLALMIGFYLAFVARRIDPRPEDREDAEIADGAG 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2125200440  81 ELGFFAPHSWWPILISLSFSTAAVGAALwLPWLIAAGVAFVITSVCGLVFEYYWGPEK 138
Cdd:pfam12270  76 ELGFFSPHSWWPLVLAAAAALAFLGLAF-GWWLLIIGVVLGLIALVGWVFEYYRGEHA 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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