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Conserved domains on  [gi|22028222|gb|AAH34906|]
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Taok1 protein, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNase_Y_N super family cl37830
RNase Y N-terminal region;
1-55 1.88e-03

RNase Y N-terminal region;


The actual alignment was detected with superfamily member pfam12072:

Pssm-ID: 463456 [Multi-domain]  Cd Length: 201  Bit Score: 37.56  E-value: 1.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 22028222     1 MQAEAQHDRELRELEQRVSLRRALLEQKIEE--EMLALQNERTERIRSLLERQAREI 55
Cdd:pfam12072  98 DESLEKKEESLEKKEKELEAQQQQLEEKEEEleELIEEQRQELERISGLTSEEAKEI 154
 
Name Accession Description Interval E-value
RNase_Y_N pfam12072
RNase Y N-terminal region;
1-55 1.88e-03

RNase Y N-terminal region;


Pssm-ID: 463456 [Multi-domain]  Cd Length: 201  Bit Score: 37.56  E-value: 1.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 22028222     1 MQAEAQHDRELRELEQRVSLRRALLEQKIEE--EMLALQNERTERIRSLLERQAREI 55
Cdd:pfam12072  98 DESLEKKEESLEKKEKELEAQQQQLEEKEEEleELIEEQRQELERISGLTSEEAKEI 154
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
8-65 3.13e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 37.53  E-value: 3.13e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22028222   8 DRELRELEQRVSLRRALLEQKI--EEEMLALQNErTERIRSLLERQAREIEAFDSESMRL 65
Cdd:COG2433 440 DERIERLERELSEARSEERREIrkDREISRLDRE-IERLERELEEERERIEELKRKLERL 498
PRK12704 PRK12704
phosphodiesterase; Provisional
 1-55 6.42e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 36.29  E-value: 6.42e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22028222    1 MQAEAQHDRELRELEQR----------VSLRRALLEQKIEE--EMLALQNERTERIRSLLERQAREI 55
Cdd:PRK12704  92 LQKEENLDRKLELLEKReeelekkekeLEQKQQELEKKEEEleELIEEQLQELERISGLTAEEAKEI 158
 
Name Accession Description Interval E-value
RNase_Y_N pfam12072
RNase Y N-terminal region;
1-55 1.88e-03

RNase Y N-terminal region;


Pssm-ID: 463456 [Multi-domain]  Cd Length: 201  Bit Score: 37.56  E-value: 1.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 22028222     1 MQAEAQHDRELRELEQRVSLRRALLEQKIEE--EMLALQNERTERIRSLLERQAREI 55
Cdd:pfam12072  98 DESLEKKEESLEKKEKELEAQQQQLEEKEEEleELIEEQRQELERISGLTSEEAKEI 154
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
8-65 3.13e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 37.53  E-value: 3.13e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22028222   8 DRELRELEQRVSLRRALLEQKI--EEEMLALQNErTERIRSLLERQAREIEAFDSESMRL 65
Cdd:COG2433 440 DERIERLERELSEARSEERREIrkDREISRLDRE-IERLERELEEERERIEELKRKLERL 498
PRK12704 PRK12704
phosphodiesterase; Provisional
 1-55 6.42e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 36.29  E-value: 6.42e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22028222    1 MQAEAQHDRELRELEQR----------VSLRRALLEQKIEE--EMLALQNERTERIRSLLERQAREI 55
Cdd:PRK12704  92 LQKEENLDRKLELLEKReeelekkekeLEQKQQELEKKEEEleELIEEQLQELERISGLTAEEAKEI 158
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 1-62 8.75e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 36.31  E-value: 8.75e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22028222      1 MQA-EAQHDREL--RElEQRVSLRRALLEQKIEEEMlALQNERTERIRSLLERQAREIEAFDSES 62
Cdd:pfam01576  722 MQAlKAQFERDLqaRD-EQGEEKRRQLVKQVRELEA-ELEDERKQRAQAVAAKKKLELDLKELEA 784
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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