|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.02e-146 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 416.94 E-value: 2.02e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 1 MSPYVLLIISISLLLGTSLTLFSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWM 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 81 TNQWTLFQISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALS 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 161 STLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 241 TIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWSYQQT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 23344022 321 KTTNIIPSLTIISSLLLPLTPLFITLS 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-286 |
7.94e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 88.14 E-value: 7.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTY-PNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFQISDQT-------- 93
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 94 ---SSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLL-TWQKIAP-----MSLMYQISSSLDMKILTILALSSTLL 164
Cdd:pfam00361 81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 165 GGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIIT---------TLTLFLTLNYSSSNKIKSLANLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 23344022 236 KSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
23-299 |
1.74e-15 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.08 E-value: 1.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTYP-NHPRTTESAIKYFLTQSTASMMLMFAI------------------INNAWMTNQ 83
Cdd:COG1007 121 ANDLLTLFLGLELLSLSLYVLVAFRrDDRRSSEAALKYFLLGALSSGFLLYGIsllygatgslnlagiaaaLAAGGANSP 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 84 WTLFqisdqtsSITMTLA-LAIKLGLAPFHFRVqklP---QGIPLTSGMLLLTWQKIAPMSLMYQI------SSSLDMK- 152
Cdd:COG1007 201 LLLL-------GLVLVLAgLAFKLSAVPFHMWT---PdvyEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQl 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 153 ILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTL----MLLNLIIYIITTL-----TLFLTLNYSS 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLgafavILLLSRKGGE 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23344022 224 SNKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYA 299
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
22-332 |
1.87e-11 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 64.97 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAIIPMMTY-PNHPRTTESAIKYFLTQSTASMMLMFAI-----------------INNAWMTNQ 83
Cdd:TIGR01770 120 SSNDLLSIYLGLELQSLCFYVLAGLkRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfedlllFLSNGMLNI 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 84 WTLFqisdqTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQIS-------SSLDMKILTI 156
Cdd:TIGR01770 200 SLLL-----LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAI 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 157 LALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIIT----------TLTLFLTLNYSSSNK 226
Cdd:TIGR01770 275 IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalmslgafgVLSLLRSYKDEWIEY 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 227 IKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYAstltMFP 306
Cdd:TIGR01770 355 ISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV----MYF 430
|
330 340
....*....|....*....|....*.
gi 23344022 307 STNNSKLQwSYQQTKTTNIIPSLTII 332
Cdd:TIGR01770 431 DKPERRIP-SNPQSKAQSLLLSISAL 455
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.02e-146 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 416.94 E-value: 2.02e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 1 MSPYVLLIISISLLLGTSLTLFSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWM 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 81 TNQWTLFQISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALS 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 161 STLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 241 TIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWSYQQT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 23344022 321 KTTNIIPSLTIISSLLLPLTPLFITLS 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.04e-115 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 339.09 E-value: 1.04e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 1 MSPYVLLIISISLLLGTSLTLFSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWM 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 81 TNQWTLFQISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSlDMKILTILALS 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 161 STLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 241 TIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWSYQQT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330
....*....|..
gi 23344022 321 KTTNIIPSLTII 332
Cdd:MTH00135 320 QLTLPLAISTTA 331
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.81e-106 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 315.32 E-value: 1.81e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 1 MSPYVLLIISISLLLGTSLTLFSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWM 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 81 TNQWTLFQISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALS 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 161 STLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPM 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 241 TIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWsYQQT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYW-RFKN 319
|
330
....*....|..
gi 23344022 321 KTTNIIPSLTII 332
Cdd:MTH00070 320 KTNNLLSLTIIL 331
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-325 |
1.47e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 312.91 E-value: 1.47e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 1 MSPYVLLIISISLLLGTSLTLFSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWM 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 81 TNQWTLFQISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALS 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 161 STLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 241 TIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWSYQQT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
....*
gi 23344022 321 KTTNI 325
Cdd:MTH00112 321 KNTLT 325
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-315 |
5.65e-78 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 242.57 E-value: 5.65e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 1 MSPYVLLIISISLLLGTSLTLFSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWM 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 81 TNQWTLFQISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALS 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 161 STLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPM 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23344022 241 TIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQW 315
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSW 315
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
22-306 |
4.81e-70 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 222.11 E-value: 4.81e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFQISDQTSSITMTLA 101
Cdd:MTH00041 22 SSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 102 LAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALSSTLLGGWGGLNQTHLRKILAY 181
Cdd:MTH00041 102 LALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAF 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 182 SSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFM 261
Cdd:MTH00041 182 SSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFL 261
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 23344022 262 PKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFP 306
Cdd:MTH00041 262 NKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
22-317 |
4.07e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 167.37 E-value: 4.07e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTlfqisdqtSSITMTLA 101
Cdd:MTH00144 22 SSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF--------SMSLLLLG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 102 LAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDM-KILTILALSSTLLGGWGGLNQTHLRKILA 180
Cdd:MTH00144 94 LCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 181 YSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLwNKSTPMTIIILLTLLSLGGLPPLTGF 260
Cdd:MTH00144 174 YSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSLGGLPPFLGF 252
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 23344022 261 MPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWSY 317
Cdd:MTH00144 253 CSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
22-332 |
8.68e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 156.14 E-value: 8.68e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFqisdqtSSITMTLA 101
Cdd:MTH00160 23 SSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNI------SSMLINSS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 102 LAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMyqiSSSLDMKILTILALSSTLLGGWGGLNQTHLRKILAY 181
Cdd:MTH00160 97 LLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAY 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 182 SSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFM 261
Cdd:MTH00160 174 SSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFL 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23344022 262 PKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTMFPSTNNSKLQWSYQQTKTTNIIPSLTII 332
Cdd:MTH00160 254 PKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSFISLF 324
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
23-304 |
1.09e-39 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 142.61 E-value: 1.09e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAiinnawMTNQWTLFQISDQTSSITMTLAL 102
Cdd:MTH00011 25 SNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSLLKNITALMLLVSL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 103 AIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMKILTILALSSTLLGGWGGLNQTHLRKILAYS 182
Cdd:MTH00011 99 MLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 183 SIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFMP 262
Cdd:MTH00011 179 SIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMP 258
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 23344022 263 KWLILQELTAHNNITTAILMALSALLNLFFYMRIIYASTLTM 304
Cdd:MTH00011 259 KLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
23-300 |
4.65e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 124.78 E-value: 4.65e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMfaiinnawMTNQWTLFQISDQTSSITMT-LA 101
Cdd:MTH00197 17 SSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLL--------MGGSLSFSNLYLSLLSVVLViLG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 102 LAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMkiLTILALSSTLLGGWGGLNQTHLRKILAY 181
Cdd:MTH00197 89 LLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMG--LLICSVLSSLIGGIGGMNQSNIRQLLAY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 182 SSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSSSNKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFM 261
Cdd:MTH00197 167 SSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFF 246
|
250 260 270
....*....|....*....|....*....|....*....
gi 23344022 262 PKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYAS 300
Cdd:MTH00197 247 LKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-286 |
7.94e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 88.14 E-value: 7.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTY-PNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFQISDQT-------- 93
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 94 ---SSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLL-TWQKIAP-----MSLMYQISSSLDMKILTILALSSTLL 164
Cdd:pfam00361 81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 165 GGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIIT---------TLTLFLTLNYSSSNKIKSLANLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 23344022 236 KSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
22-297 |
7.30e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 77.76 E-value: 7.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAI-IPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAI-------------INNAWMTNQWTLF 87
Cdd:MTH00196 11 SSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVLNSGQSFS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 88 QISDQTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISSSLDMkiLTILALSSTLLGGW 167
Cdd:MTH00196 91 SVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNI--LLIGGLFSLFVGAI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 168 GGLNQTHLRKILAYSSIAHMGWMVIIIPINP----TLMLLNLIIYIITTLTLFLTLNYSSSNK--IKSLANLWNKSTPMT 241
Cdd:MTH00196 169 GALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILA 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 23344022 242 IIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRII 297
Cdd:MTH00196 249 ITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
23-299 |
1.74e-15 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.08 E-value: 1.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTYP-NHPRTTESAIKYFLTQSTASMMLMFAI------------------INNAWMTNQ 83
Cdd:COG1007 121 ANDLLTLFLGLELLSLSLYVLVAFRrDDRRSSEAALKYFLLGALSSGFLLYGIsllygatgslnlagiaaaLAAGGANSP 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 84 WTLFqisdqtsSITMTLA-LAIKLGLAPFHFRVqklP---QGIPLTSGMLLLTWQKIAPMSLMYQI------SSSLDMK- 152
Cdd:COG1007 201 LLLL-------GLVLVLAgLAFKLSAVPFHMWT---PdvyEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQl 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 153 ILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTL----MLLNLIIYIITTL-----TLFLTLNYSS 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLgafavILLLSRKGGE 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23344022 224 SNKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYA 299
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
22-210 |
4.90e-13 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 69.85 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAIIPMMTYPN-HPRTTESAIKYFLTQSTASMMLMFAI-----------------INNAWMTNQ 83
Cdd:PRK05777 121 SANDLLTLFLGLELLSLPLYALAALRRdRRRSLEAAIKYFVLGALASGFLLYGMsllygatgslsfagiakALADGSGNS 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 84 WTLFqisdqTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQI------SSSLDMK-ILTI 156
Cdd:PRK05777 201 LLLL-----FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafgGLSEDWQqVLAI 275
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 23344022 157 LALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYII 210
Cdd:PRK05777 276 IAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLL 329
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
23-298 |
7.35e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 69.28 E-value: 7.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAI-IPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFQISDQTSS----IT 97
Cdd:MTH00199 116 SINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkIL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 98 MTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQISssLDMKILTILALSSTLLGGWGGLNQTHLRK 177
Cdd:MTH00199 196 ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIG--PVTNVVLICAVLSIIYGAIGALNQTKIKR 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 178 ILAYSSIAHMGWMVIIIPINP----TLMLLNLIIYIITT--LTLFLTLNYSSSNKIKSLANLWNKSTPMTIIILLTLLSL 251
Cdd:MTH00199 274 LLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSicSFSIILSLKLTKGLIVEVSGLSRKNPVIALTLALTFLSI 353
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 23344022 252 GGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIY 298
Cdd:MTH00199 354 AGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
22-332 |
1.87e-11 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 64.97 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 22 FSNHWLVAWMGLEINTLAIIPMMTY-PNHPRTTESAIKYFLTQSTASMMLMFAI-----------------INNAWMTNQ 83
Cdd:TIGR01770 120 SSNDLLSIYLGLELQSLCFYVLAGLkRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfedlllFLSNGMLNI 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 84 WTLFqisdqTSSITMTLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMYQIS-------SSLDMKILTI 156
Cdd:TIGR01770 200 SLLL-----LGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAI 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 157 LALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIIT----------TLTLFLTLNYSSSNK 226
Cdd:TIGR01770 275 IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalmslgafgVLSLLRSYKDEWIEY 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 227 IKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYAstltMFP 306
Cdd:TIGR01770 355 ISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV----MYF 430
|
330 340
....*....|....*....|....*.
gi 23344022 307 STNNSKLQwSYQQTKTTNIIPSLTII 332
Cdd:TIGR01770 431 DKPERRIP-SNPQSKAQSLLLSISAL 455
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
30-298 |
3.51e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 57.85 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 30 WMGLEINTLAIIPMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFQISDQTSSIT----------MT 99
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDpglllaafalLL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 100 LALAIKLGLAPFHFRvqkLPQ--------------GIPLTSGM--LLLTWQKIAPMSLMYQISSsldmkILTILALSSTL 163
Cdd:COG0651 213 VGFGIKAALFPLHFW---LPDaypaapspvsallsGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTML 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 164 LGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLF--------LTLNYSSSNKIKSLANLWN 235
Cdd:COG0651 285 VGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKallflaagAIERATGTRDLDKLGGLGK 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23344022 236 KSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIY 298
Cdd:COG0651 365 RMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFG 427
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
23-192 |
1.36e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 56.41 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLVAWMGLEINTLAIIPMMTYPNHPRTT---------ESAIKYFLTQSTAS------MMLMFAIINNAWMTNqwTLF 87
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSgfylfgCALYFGFTGNEGMLG--TIL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 88 QISDQTSSITM----------TLALAIKLGLAPFHFRVQKLPQGIPLTSGMLLLTWQKIAPMSLMyqISSSLDMKILTIL 157
Cdd:MTH00198 285 SATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSV 362
|
170 180 190
....*....|....*....|....*....|....*
gi 23344022 158 ALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVI 192
Cdd:MTH00198 363 AIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-332 |
1.18e-07 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 47.64 E-value: 1.18e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 23344022 291 FFYMRIIYASTLTMFPSTNNSKLQWSYQQTKTTNIIPSLTII 332
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTL 42
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
55-194 |
1.33e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 49.94 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 55 SAIKYFLTQSTASMMLMFAIINNAWMT------NQWTLFQISDQTSSITMT---LALAIKLGLAPFH-----FRVQKLPQ 120
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGggtfdlLELLNLPLPFGVQTWLFLaffIAFAVKVPLFPLHtwlpdAHVEAPTA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 121 GIPLTSGMLLltwqKIAPMSLM------YQISSSLDMKILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIII 194
Cdd:TIGR01972 237 GSVILAGVLL----KMGTYGFLrfnlplFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 312
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
56-192 |
4.38e-06 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 48.15 E-value: 4.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 56 AIKYFLTQSTASMMLMFAIINNAWMTNQWTlFQISD-QTSSITMT----------LALAIKLGLAPFH-----FRVQKLP 119
Cdd:COG1008 163 AIKFFLYTLAGSLLMLVAILALYFLAGALT-FDIAElAAAPLPLTaqlllflaffIAFAVKVPMFPFHtwlpdAHVEAPT 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 120 QGIPLTSGMLLltwqKIA-------PMSLMYQISSSLdMKILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVI 192
Cdd:COG1008 242 AGSVLLAGVLL----KMGgygllrfALPLFPEASAYF-APLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-209 |
4.16e-05 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 44.99 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 51 RTTESAIKYFLTQSTASMMLMFAI----------INNAWMTNQWTLFQISDQTSS----ITMTLALAIKLGLAPFHFRVQ 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFswlyglsggeIELQEIVNGLINTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 117 KLPQGIPLTSGMLLLTWQKIAPMSLMYQI-------SSSLDMKILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyfSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318
|
170 180
....*....|....*....|....*
gi 23344022 190 MVI-IIPINP----TLMLLNLIIYI 209
Cdd:CHL00049 319 VIIgIIVGDSndgyASMITYMLFYI 343
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
153-298 |
1.32e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 43.81 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 153 ILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSS--------S 224
Cdd:PRK12667 297 ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASgvfihaagT 376
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23344022 225 NKIKSLANLWNKSTPMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIY 298
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
|
|
| PRK08168 |
PRK08168 |
NADH-quinone oxidoreductase subunit L; |
23-206 |
1.94e-04 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236171 [Multi-domain] Cd Length: 516 Bit Score: 43.15 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 23 SNHWLV---AWM--GLEINTLaiipMMTYPNHPRTTESAIKYFLTQSTASMMLMFAIINNAWMTNQWTLFQI-------- 89
Cdd:PRK08168 119 SDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwahlaaqg 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 90 ---SDQTSSITMTLALAIKLGLAPFH---FRVQKLPQ--------GIPLTSGMLLLtwqKIAPMslmyqISSSLDMK-IL 154
Cdd:PRK08168 195 aspSLQAAALLLVLAVILKTAQLPVHgwlIQVMEAPTpvsallhaGVVNLGGFVLI---RFAPL-----LEQAPPARwLL 266
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 23344022 155 TILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVIIIPINP-TLMLLNLI 206
Cdd:PRK08168 267 VLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLyELALLHLV 319
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
100-299 |
7.42e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 41.40 E-value: 7.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 100 LALAIKLGLAPFHfrvQKLPQGIPLTSG--MLLL--TWQKIAP------MSLMYQISSSLDMKILTIL---ALSSTLLGG 166
Cdd:PRK08375 210 LALALKAAVFPLH---TWLPRAYPAAPPvvTALLsgLVTKVAVyaliriYFTVFGGDFRFALGLGWLLavlALLSMLVGS 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344022 167 WGGLNQTHLRKILAYSSIAHMGWMVIIIPINPTLMLLNLIIYIITTLTLFLTLNYSS--------SNKIKSLANLWNKST 238
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAgaievtygTRRLSELSGLGRRMP 366
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23344022 239 PMTIIILLTLLSLGGLPPLTGFMPKWLILQELTAHNNITTAILMALSALLNLFFYMRIIYA 299
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
153-192 |
2.04e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 39.75 E-value: 2.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 23344022 153 ILTILALSSTLLGGWGGLNQTHLRKILAYSSIAHMGWMVI 192
Cdd:COG1009 277 VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
|
|
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