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Conserved domains on  [gi|239938650|sp|P35908|]
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RecName: Full=Keratin, type II cytoskeletal 2 epidermal; AltName: Full=Cytokeratin-2e; Short=CK-2e; AltName: Full=Epithelial keratin-2e; AltName: Full=Keratin-2 epidermis; AltName: Full=Keratin-2e; Short=K2e; AltName: Full=Type-II keratin Kb2

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
177-490 5.44e-138

Intermediate filament protein;


:

Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 405.07  E-value: 5.44e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  177 QEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMNvGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNN 256
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKDLETKISELRQKK-GAEPSRLYSLYEREIRELRRQLDTLTVERARLQLELDN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  257 MQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKVLYDAEISQIHQSVTDTNVILS 336
Cdd:pfam00038  80 LRLAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKNHEEEVRELQSQVSDTQVNVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  337 MDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQ 416
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAEKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQ 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 239938650  417 CKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECR 490
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQQIRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
60-77 1.90e-03

Keratin type II head;


:

Pssm-ID: 435217 [Multi-domain]  Cd Length: 159  Bit Score: 39.26  E-value: 1.90e-03
                          10
                  ....*....|....*...
gi 239938650   60 SRSLVGLGGTKSISISVA 77
Cdd:pfam16208  46 SRSLYNLGGSKSISISVA 63
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
177-490 5.44e-138

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 405.07  E-value: 5.44e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  177 QEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMNvGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNN 256
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKDLETKISELRQKK-GAEPSRLYSLYEREIRELRRQLDTLTVERARLQLELDN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  257 MQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKVLYDAEISQIHQSVTDTNVILS 336
Cdd:pfam00038  80 LRLAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKNHEEEVRELQSQVSDTQVNVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  337 MDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQ 416
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAEKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQ 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 239938650  417 CKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECR 490
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQQIRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
233-485 8.81e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 58.57  E-value: 8.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  233 IDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEF 312
Cdd:COG1196   234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  313 LKvlydAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKyEELQVTVGRHGDSLKEI 392
Cdd:COG1196   314 LE----NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL-EELEELFEALREELAEL 388
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  393 KIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehaLKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLA 472
Cdd:COG1196   389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEE----LKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464
                         250
                  ....*....|...
gi 239938650  473 LDVEIATYRKLLE 485
Cdd:COG1196   465 LERELAELQEELQ 477
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
179-466 2.36e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.30  E-value: 2.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   179 REQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMnVGTRPINLEPI------FQGYIDSLKRYLDGLTAERTSQNS 252
Cdd:TIGR02169  680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK-IGEIEKEIEQLeqeeekLKERLEELEEDLSSLEQEIENVKS 758
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   253 ELnnmqDLVEDYKKKYEDEINKRTAAENDfvtLKKDvdnaymikvELQSKVDLLNQEIEFLKvlydAEISQIHQSVTDTN 332
Cdd:TIGR02169  759 EL----KELEARIEELEEDLHKLEEALND---LEAR---------LSHSRIPEIQAELSKLE----EEVSRIEARLREIE 818
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   333 VILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALyhskyEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAH 412
Cdd:TIGR02169  819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-----ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 239938650   413 VKKQCKNVQDAIADAEQrgehALKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02169  894 LEAQLRELERKIEELEA----QIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
46 PHA02562
endonuclease subunit; Provisional
194-447 1.71e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.15  E-value: 1.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 194 DKVRFLEQQNQVLQTKWELLQQMnvgtrpinlepifqgyIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEIN 273
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQ----------------IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 274 KRTAAENDFVTLKKDVDNAY----MIKVELQSKVDLLNQEIEFLKvlYDAEISQIHQSVTDTNVILSmdnsrnlDLDSII 349
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALnklnTAAAKIKSKIEQFQKVIKMYE--KGGVCPTCTQQISEGPDRIT-------KIKDKL 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 350 AEVKAQYEEIAQRSKEEAEALyhSKYEELQVTvgrhgdsLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQ 429
Cdd:PHA02562 309 KELQHSLEKLDTAIDELEEIM--DEFNEQSKK-------LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
                        250       260
                 ....*....|....*....|.
gi 239938650 430 RGE---HALKDARNKLNDLEE 447
Cdd:PHA02562 380 ELAklqDELDKIVKTKSELVK 400
Keratin_2_head pfam16208
Keratin type II head;
60-77 1.90e-03

Keratin type II head;


Pssm-ID: 435217 [Multi-domain]  Cd Length: 159  Bit Score: 39.26  E-value: 1.90e-03
                          10
                  ....*....|....*...
gi 239938650   60 SRSLVGLGGTKSISISVA 77
Cdd:pfam16208  46 SRSLYNLGGSKSISISVA 63
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
177-490 5.44e-138

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 405.07  E-value: 5.44e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  177 QEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMNvGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNN 256
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKDLETKISELRQKK-GAEPSRLYSLYEREIRELRRQLDTLTVERARLQLELDN 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  257 MQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKVLYDAEISQIHQSVTDTNVILS 336
Cdd:pfam00038  80 LRLAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKNHEEEVRELQSQVSDTQVNVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  337 MDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQ 416
Cdd:pfam00038 160 MDAARKLDLTSALAEIRAQYEEIAEKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQ 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 239938650  417 CKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECR 490
Cdd:pfam00038 240 KASLERQLAETEERYELQLADYQELISELEAELQQIRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
233-485 8.81e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 58.57  E-value: 8.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  233 IDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEF 312
Cdd:COG1196   234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  313 LKvlydAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKyEELQVTVGRHGDSLKEI 392
Cdd:COG1196   314 LE----NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL-EELEELFEALREELAEL 388
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  393 KIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehaLKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLA 472
Cdd:COG1196   389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEE----LKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464
                         250
                  ....*....|...
gi 239938650  473 LDVEIATYRKLLE 485
Cdd:COG1196   465 LERELAELQEELQ 477
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
216-495 1.97e-08

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 57.80  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  216 MNVGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMI 295
Cdd:COG1196   652 ITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEE 731
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  296 KVELQSKVDLLNQEIEFLKVLYDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIA--QRSKEEAEALYHS 373
Cdd:COG1196   732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEelEEELEEAERRLDA 811
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  374 KYEELQVTVGRHGDSLKEI-----------------KIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehaLK 436
Cdd:COG1196   812 LERELESLEQRRERLEQEIeeleeeieeleekldelEEELEELEKELEELKEELEELEAEKEELEDELKELEEE----KE 887
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  437 DARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEI-ATYRKLLEGEECRMSGDL 495
Cdd:COG1196   888 ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELpELEEELEEEYEDTLETEL 947
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
179-466 2.36e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.30  E-value: 2.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   179 REQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMnVGTRPINLEPI------FQGYIDSLKRYLDGLTAERTSQNS 252
Cdd:TIGR02169  680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK-IGEIEKEIEQLeqeeekLKERLEELEEDLSSLEQEIENVKS 758
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   253 ELnnmqDLVEDYKKKYEDEINKRTAAENDfvtLKKDvdnaymikvELQSKVDLLNQEIEFLKvlydAEISQIHQSVTDTN 332
Cdd:TIGR02169  759 EL----KELEARIEELEEDLHKLEEALND---LEAR---------LSHSRIPEIQAELSKLE----EEVSRIEARLREIE 818
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   333 VILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALyhskyEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAH 412
Cdd:TIGR02169  819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-----ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 239938650   413 VKKQCKNVQDAIADAEQrgehALKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02169  894 LEAQLRELERKIEELEA----QIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
243-466 2.69e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.91  E-value: 2.69e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   243 LTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFL---KVLYDA 319
Cdd:TIGR02168  230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLeqqKQILRE 309
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   320 EISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEAL---------YHSKYEELQVTVGRHGDSLK 390
Cdd:TIGR02168  310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELeeleaeleeLESRLEELEEQLETLRSKVA 389
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 239938650   391 EIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQR-GEHALKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02168  390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
230-466 6.19e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 52.76  E-value: 6.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   230 QGYIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEinkrtaAENDFVTLKKDVDNAYMIKVELQSKVDLLNQE 309
Cdd:TIGR02169  243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL------GEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   310 IEFLK---VLYDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVgrhg 386
Cdd:TIGR02169  317 LEDAEerlAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---- 392
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   387 dSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRG---EHALKDARNKLNDLEEALQQAKEDLARLLRDY 463
Cdd:TIGR02169  393 -KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKInelEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471

                   ...
gi 239938650   464 QEL 466
Cdd:TIGR02169  472 YDL 474
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
247-485 9.43e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 52.37  E-value: 9.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   247 RTSQNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKvlydAEISQIHQ 326
Cdd:TIGR02168  672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEE 747
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   327 SVTDTNVilsmdnsRNLDLDSIIAEVKAQYEEIAQRSKEEAEalyhsKYEELQVTVGRHGDSLKEIKIEISELNRVIQRL 406
Cdd:TIGR02168  748 RIAQLSK-------ELTELEAEIEELEERLEEAEEELAEAEA-----EIEELEAQIEQLKEELKALREALDELRAELTLL 815
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   407 QGEIAHVKKQCKNVQDAIADAEQRGEHA---LKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKL 483
Cdd:TIGR02168  816 NEEAANLRERLESLERRIAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895

                   ..
gi 239938650   484 LE 485
Cdd:TIGR02168  896 LE 897
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
176-476 9.86e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 52.02  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  176 AQEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQmnvgtrpinLEPIFQGYIDSLKRYLDGLTAERTSQNSELN 255
Cdd:COG1196   670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRR---------QLEELERQLEELKRELAALEEELEQLQSRLE 740
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  256 NMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLkvlyDAEISQIHQSVTDTNVIL 335
Cdd:COG1196   741 ELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL----EEELEEAERRLDALEREL 816
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  336 SMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEAL--YHSKYEELQvtvgrhgDSLKEIKIEISELNRVIQRLQGEIAHV 413
Cdd:COG1196   817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELeeLEKELEELK-------EELEELEAEKEELEDELKELEEEKEEL 889
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 239938650  414 KKQCKNVQDAIADAEQRGEhalkDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVE 476
Cdd:COG1196   890 EEELRELESELAELKEEIE----KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
341-482 1.59e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   341 RNLDLDSIIAEVKAQYEEIAQRSKEEAEA------------LYHSKYEELQVTVGRHGDS-------LKEIKIEISELNR 401
Cdd:TIGR02168  223 RELELALLVLRLEELREELEELQEELKEAeeeleeltaelqELEEKLEELRLEVSELEEEieelqkeLYALANEISRLEQ 302
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   402 VIQRLQGEIAHVKKQCKNVQDAIADAEQRGEHA---LKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIA 478
Cdd:TIGR02168  303 QKQILRERLANLERQLEELEAQLEELESKLDELaeeLAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382

                   ....
gi 239938650   479 TYRK 482
Cdd:TIGR02168  383 TLRS 386
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
176-472 3.93e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 3.93e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   176 AQEREQ-IKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQMNVGTRPINLEPIFQ-----GYIDSLKRYLDGLTAERTS 249
Cdd:TIGR02168  672 ILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisalrKDLARLEAEVEQLEERIAQ 751
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   250 QNSELNNMQDLVEDYKKKYEDEINKRTAAENDFVTLKKDVDNA--------YMIKvELQSKVDLLNQEI----------E 311
Cdd:TIGR02168  752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeelkalrEALD-ELRAELTLLNEEAanlrerleslE 830
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   312 FLKVLYDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEI--AQRSKEEAEALYHSKYEELQVTVGRHGDSL 389
Cdd:TIGR02168  831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELEELSEELRELESKR 910
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   390 KEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNV 469
Cdd:TIGR02168  911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV 987

                   ...
gi 239938650   470 KLA 472
Cdd:TIGR02168  988 NLA 990
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
351-488 4.71e-04

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 43.55  E-value: 4.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  351 EVKAQYEEIaqrskEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQR 430
Cdd:COG1196   236 ELRKELEEL-----EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 239938650  431 gehaLKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEE 488
Cdd:COG1196   311 ----LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364
46 PHA02562
endonuclease subunit; Provisional
194-447 1.71e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 41.15  E-value: 1.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 194 DKVRFLEQQNQVLQTKWELLQQMnvgtrpinlepifqgyIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEIN 273
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQ----------------IKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 274 KRTAAENDFVTLKKDVDNAY----MIKVELQSKVDLLNQEIEFLKvlYDAEISQIHQSVTDTNVILSmdnsrnlDLDSII 349
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALnklnTAAAKIKSKIEQFQKVIKMYE--KGGVCPTCTQQISEGPDRIT-------KIKDKL 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 350 AEVKAQYEEIAQRSKEEAEALyhSKYEELQVTvgrhgdsLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQ 429
Cdd:PHA02562 309 KELQHSLEKLDTAIDELEEIM--DEFNEQSKK-------LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
                        250       260
                 ....*....|....*....|.
gi 239938650 430 RGE---HALKDARNKLNDLEE 447
Cdd:PHA02562 380 ELAklqDELDKIVKTKSELVK 400
Keratin_2_head pfam16208
Keratin type II head;
60-77 1.90e-03

Keratin type II head;


Pssm-ID: 435217 [Multi-domain]  Cd Length: 159  Bit Score: 39.26  E-value: 1.90e-03
                          10
                  ....*....|....*...
gi 239938650   60 SRSLVGLGGTKSISISVA 77
Cdd:pfam16208  46 SRSLYNLGGSKSISISVA 63
PRK09039 PRK09039
peptidoglycan -binding protein;
318-458 2.33e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.72  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 318 DAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEiAQRSKEEAEALYHSKYEELQVTVGRHGD---SLKEIKI 394
Cdd:PRK09039  52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA-AEAERSRLQALLAELAGAGAAAEGRAGElaqELDSEKQ 130
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 239938650 395 EISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRGehalKDARNKLNDLEE----ALQQAKEDLAR 458
Cdd:PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRD----RESQAKIADLGRrlnvALAQRVQELNR 194
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
318-467 3.77e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 40.09  E-value: 3.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 318 DAEISQIHQSVTDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHSKYEELQVTVGRHGDSLKE--IKIE 395
Cdd:COG4942   72 ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSvrLAIY 151
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 239938650 396 ISELNRVIQRLQGEIAHVKKQCKNVQDAIAdAEQRgehALKDARNKLNDLEEALQQAKEDLARLLRDYQELM 467
Cdd:COG4942  152 YGALNPARAERIDALKATLKQLAAVRAEIA-AEQA---ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
387-485 5.02e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 40.05  E-value: 5.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650   387 DSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehaLKDARNKLNDLEEALQQAKEDLARLLRDYQEL 466
Cdd:TIGR02169  674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK----IGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
                           90
                   ....*....|....*....
gi 239938650   467 MNVKLALDVEIATYRKLLE 485
Cdd:TIGR02169  750 EQEIENVKSELKELEARIE 768
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
154-456 5.33e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.00  E-value: 5.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  154 SVNQSLLQPLNVKVDP--EIQNVKAQEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKWELLQQmnvgtrpiNLEPIFQG 231
Cdd:TIGR04523 356 SENSEKQRELEEKQNEieKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ--------EKELLEKE 427
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  232 Y------IDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKK---YEDEINK-RTAAENDFVTLKKDVDNAYMI---KVE 298
Cdd:TIGR04523 428 IerlketIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQlkvLSRSINKiKQNLEQKQKELKSKEKELKKLneeKKE 507
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  299 LQSKVDLLNQEIEFLKVLYD---AEISQIHQSVTDTNVILSMDNSrNLDLDSIIAEVKAQYEEIAQrSKEEAEALyHSKY 375
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEkleSEKKEKESKISDLEDELNKDDF-ELKKENLEKEIDEKNKEIEE-LKQTQKSL-KKKQ 584
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  376 EELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIadaeqrgehalKDARNKLNDLEEALQQAKED 455
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII-----------KNIKSKKNKLKQEVKQIKET 653

                  .
gi 239938650  456 L 456
Cdd:TIGR04523 654 I 654
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
385-488 5.98e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 38.89  E-value: 5.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650 385 HGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRgehaLKDARNKL---------NDLEEALQQAKED 455
Cdd:COG1579   29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER----IKRAEEKLsavkderelRALNIEIQIAKER 104
                         90       100       110
                 ....*....|....*....|....*....|...
gi 239938650 456 LARLLRDYQELMNVKLALDVEIATYRKLLEGEE 488
Cdd:COG1579  105 INSLEDELAELMEEIEKLEKEIEDLKERLERLE 137
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
371-485 6.02e-03

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 39.70  E-value: 6.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  371 YHSKYEELQvtvgrhgDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQRGEHALKDARNKLNDLEEALQ 450
Cdd:COG1196   170 YKERKEEAE-------RKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE 242
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 239938650  451 QAKEDLARLLRDYQELMNVKLALDVEIATYRKLLE 485
Cdd:COG1196   243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
246-491 7.91e-03

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 39.31  E-value: 7.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  246 ERTSQN-SELNNMQDLVEDYKKKYEDEINKRtaaeNDFVTLKKDVDNAYmiKVELQSKVDLLNQEIEFLkvlyDAEISQI 324
Cdd:COG1196   182 ERTEENlERLEDLLEELEKQLEKLERQAEKA----ERYQELKAELRELE--LALLLAKLKELRKELEEL----EEELSRL 251
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  325 HQSvtdtnviLSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYH--SKYEELQVTVGRHGDSLKEIKIEISELNRV 402
Cdd:COG1196   252 EEE-------LEELQEELEEAEKEIEELKSELEELREELEELQEELLElkEEIEELEGEISLLRERLEELENELEELEER 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239938650  403 -------IQRLQGEIAHVKKQCKNVQDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDV 475
Cdd:COG1196   325 leelkekIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404
                         250
                  ....*....|....*.
gi 239938650  476 EIATYRKLLEGEECRM 491
Cdd:COG1196   405 EIESLEERLERLSERL 420
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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