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Conserved domains on  [gi|2494045|sp|Q62716|]
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RecName: Full=Neutrophil antibiotic peptide NP-1; Short=RatNP-1; AltName: Full=Neutrophil defensin 1; Flags: Precursor

Protein Classification

Defensin_propep and Defensin_1 domain-containing protein( domain architecture ID 10467842)

Defensin_propep and Defensin_1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-51 1.57e-12

Defensin propeptide;


:

Pssm-ID: 459976  Cd Length: 51  Bit Score: 56.46  E-value: 1.57e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2494045     1 MRTLTLLTALLLLALHTQAKSPQGTAEEAPDQEQLVMEDQDISISFGGDKG 51
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGDES 51
Defensin_1 pfam00323
Mammalian defensin;
65-93 3.11e-10

Mammalian defensin;


:

Pssm-ID: 425607  Cd Length: 29  Bit Score: 50.29  E-value: 3.11e-10
                         10        20
                 ....*....|....*....|....*....
gi 2494045    65 CYCRRTRCGFRERLSGACGYRGRIYRLCC 93
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
 
Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-51 1.57e-12

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 56.46  E-value: 1.57e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2494045     1 MRTLTLLTALLLLALHTQAKSPQGTAEEAPDQEQLVMEDQDISISFGGDKG 51
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGDES 51
Defensin_1 pfam00323
Mammalian defensin;
65-93 3.11e-10

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 50.29  E-value: 3.11e-10
                         10        20
                 ....*....|....*....|....*....
gi 2494045    65 CYCRRTRCGFRERLSGACGYRGRIYRLCC 93
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 65-93 3.57e-07

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 42.32  E-value: 3.57e-07
                          10        20
                  ....*....|....*....|....*....
gi 2494045     65 CYCRRTRCGFRERLSGACGYRGRIYRLCC 93
Cdd:smart00048  1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-51 1.57e-12

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 56.46  E-value: 1.57e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2494045     1 MRTLTLLTALLLLALHTQAKSPQGTAEEAPDQEQLVMEDQDISISFGGDKG 51
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGDES 51
Defensin_1 pfam00323
Mammalian defensin;
65-93 3.11e-10

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 50.29  E-value: 3.11e-10
                         10        20
                 ....*....|....*....|....*....
gi 2494045    65 CYCRRTRCGFRERLSGACGYRGRIYRLCC 93
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 65-93 3.57e-07

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 42.32  E-value: 3.57e-07
                          10        20
                  ....*....|....*....|....*....
gi 2494045     65 CYCRRTRCGFRERLSGACGYRGRIYRLCC 93
Cdd:smart00048  1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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