sodium channel voltage-gated type V alpha polypeptide, partial [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Na_trans_assoc | pfam06512 | Sodium ion transport-associated; Members of this family contain a region found exclusively in ... |
1-101 | 1.25e-44 | |||
Sodium ion transport-associated; Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. : Pssm-ID: 461936 Cd Length: 195 Bit Score: 144.02 E-value: 1.25e-44
|
|||||||
Ion_trans super family | cl37996 | Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
105-134 | 1.54e-03 | |||
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. The actual alignment was detected with superfamily member pfam00520: Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 36.86 E-value: 1.54e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
Na_trans_assoc | pfam06512 | Sodium ion transport-associated; Members of this family contain a region found exclusively in ... |
1-101 | 1.25e-44 | |||
Sodium ion transport-associated; Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Pssm-ID: 461936 Cd Length: 195 Bit Score: 144.02 E-value: 1.25e-44
|
|||||||
Ion_trans | pfam00520 | Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
105-134 | 1.54e-03 | |||
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 36.86 E-value: 1.54e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
Na_trans_assoc | pfam06512 | Sodium ion transport-associated; Members of this family contain a region found exclusively in ... |
1-101 | 1.25e-44 | |||
Sodium ion transport-associated; Members of this family contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of pfam00520 and, less often, one copy of pfam00612. Pssm-ID: 461936 Cd Length: 195 Bit Score: 144.02 E-value: 1.25e-44
|
|||||||
Ion_trans | pfam00520 | Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
105-134 | 1.54e-03 | |||
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 36.86 E-value: 1.54e-03
|
|||||||
Blast search parameters | ||||
|