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Conserved domains on  [gi|270267588|ref|YP_003331271|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Bathytroctes breviceps]

Protein Classification

NADH-ubiquinone oxidoreductase subunit 4L( domain architecture ID 10009576)

NADH-ubiquinone oxidoreductase subunit 4L (ND4L) is core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 4.28e-53

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177185  Cd Length: 98  Bit Score: 160.90  E-value: 4.28e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 4.28e-53

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 160.90  E-value: 4.28e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 6.70e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 63.74  E-value: 6.70e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  11 AFILGLMGLAFHRtHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVATARTHGTDRL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 270267588  91 QSLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-96 3.56e-05

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 38.89  E-value: 3.56e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSA--FILGLMGLAFHRtHLLSALLCLEGMMLSLFIAL-SLWALQLETTGHSSApMLLLAFSACEASAGLAL 77
Cdd:COG0713   1 IPLEHYLILAAilFAIGLYGVLTRR-NLIVVLMSIELMLNAVNLNLvAFSRYLGDLDGQVFA-LFVIAVAAAEVAVGLAI 78

                        90
                ....*....|....*....
gi 270267588 78 LVATARTHGTDRLQSLNLL 96
Cdd:COG0713  79 IVALYRNRGTIDVDDLNEL 97
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 4.28e-53

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 160.90  E-value: 4.28e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-98 3.49e-40

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 128.18  E-value: 3.49e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.03e-36

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 119.18  E-value: 1.03e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.49e-26

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 93.07  E-value: 2.49e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVM 80

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00107 81 VSNTYGTDYVQNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 5-96 1.32e-22

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 83.45  E-value: 1.32e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  5 HFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVATART 84
Cdd:MTH00181  2 MFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRT 81

                        90
                ....*....|..
gi 270267588 85 HGTDRLQSLNLL 96
Cdd:MTH00181 82 HGSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-97 2.00e-20

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 78.04  E-value: 2.00e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*..
gi 270267588 81 TARTHGTDRLQSLNLLQ 97
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
11-98 6.70e-15

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 63.74  E-value: 6.70e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  11 AFILGLMGLAFHRtHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVATARTHGTDRL 90
Cdd:pfam00420  9 LFLIGLYGLLLRR-NLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDV 87


                 ....*...
gi 270267588  91 QSLNLLQC 98
Cdd:pfam00420 88 DSLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 12-98 5.06e-12

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 56.52  E-value: 5.06e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSapMLLLAFSACEASAGLALLVATARTHGTDRLQ 91
Cdd:MTH00188 13 VVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLS--LVLLTFAACEASVGLALLVSLIRSHGSDYVS 90


                ....*..
gi 270267588 92 SLNLLQC 98
Cdd:MTH00188 91 SLNLIKC 97
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.11e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 53.31  E-value: 1.11e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIalSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00149  2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLV--MMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVS 79

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00149 80 LIRLHGNDYVSSLSSLKF 97
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 12-92 6.23e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 48.61  E-value: 6.23e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSapMLLLAFSACEASAGLALLVATARTHGTDRLQ 91
Cdd:MTH00162 11 FFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFL--LFFLTFSVCEGALGLSILVSMIRSHGNDYFS 88


                .
gi 270267588 92 S 92
Cdd:MTH00162 89 S 89
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 1-98 3.01e-08

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 47.05  E-value: 3.01e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIaLSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVA 80
Cdd:MTH00013  1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLAL-FIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVL 79

                        90
                ....*....|....*...
gi 270267588 81 TARTHGTDRLQSLNLLQC 98
Cdd:MTH00013 80 MTRSYGNDMLKSLTSNKC 97
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-97 4.56e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 46.56  E-value: 4.56e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVATARTHGTDRLQ 91
Cdd:MTH00180 13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                ....*.
gi 270267588 92 SLNLLQ 97
Cdd:MTH00180 93 SLNLLR 98
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 12-97 5.65e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 41.20  E-value: 5.65e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALLVATARTHGTDRLQ 91
Cdd:MTH00001 13 FLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISLK 92


                ....*.
gi 270267588 92 SLNLLQ 97
Cdd:MTH00001 93 SLNSLR 98
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-96 1.17e-05

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 40.16  E-value: 1.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588   1 MTPAHFSFSSA--FILGLMGLaFHRTHLLSALLCLEGMMLSLFIALSLWALQLETTGHSSAPMLLLAFSACEASAGLALL 78
Cdd:PRK05715   2 IPLQHYLILAAilFCIGLVGL-LLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAIL 80

                         90
                 ....*....|....*...
gi 270267588  79 VATARTHGTDRLQSLNLL 96
Cdd:PRK05715  81 LQLYRNRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-96 3.56e-05

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 38.89  E-value: 3.56e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 270267588  1 MTPAHFSFSSA--FILGLMGLAFHRtHLLSALLCLEGMMLSLFIAL-SLWALQLETTGHSSApMLLLAFSACEASAGLAL 77
Cdd:COG0713   1 IPLEHYLILAAilFAIGLYGVLTRR-NLIVVLMSIELMLNAVNLNLvAFSRYLGDLDGQVFA-LFVIAVAAAEVAVGLAI 78

                        90
                ....*....|....*....
gi 270267588 78 LVATARTHGTDRLQSLNLL 96
Cdd:COG0713  79 IVALYRNRGTIDVDDLNEL 97
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 31-98 5.78e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 37.24  E-value: 5.78e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 270267588  31 LCLEGMMLSLFIALSLWALQLETTGhssapmlllafSACEASAGLALLVATARTHGTDRLQSLNLLQC 98
Cdd:MTH00127 376 LMGELMIITSLFNWSPWTLALTGLG-----------TLITAGYSLYMFLMTQRGPLPDHIIALNPSHT 432
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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