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Conserved domains on  [gi|296010961|ref|NP_001171578|]
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zinc finger protein 185 isoform 2 [Homo sapiens]

Protein Classification

LIM domain-containing protein( domain architecture ID 10639037)

LIM domain-containing protein; LIM is a small protein-protein interaction domain containing two zinc fingers; similar to mammalian sciellin and zinc finger protein 185

Gene Ontology:  GO:0046872
PubMed:  15520811

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
 631-687 8.11e-12

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


:

Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 60.48  E-value: 8.11e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 296010961   631 ICTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKC 687
Cdd:smart00132   1 KCAGCGKPIYGTERV-LRALGKVWHPECFKCATCGKPLSG--DTFFEKDGKLYCKDC 54
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 56-529 2.51e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961   56 PSGRSRATSFSSAGEVPKPRPPSTR-APTGYIIR-----GVFTKPIDSSSQPQQQFPKAngTPKSAASLVRTAN--AGPP 127
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRdDPAPGRVSrprraRRLGRAAQASSPPQRPRRRA--ARPTVGSLTSLADppPPPP 2706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  128 RPSSSGYKMTTEDYKKLAPYNIRRSSTSGD----TEEEEEEEVVPfSSDEQKRRSEAASGVLRRTAPREhsyvlsaakKS 203
Cdd:PHA03247 2707 TPEPAPHALVSATPLPPGPAAARQASPALPaapaPPAVPAGPATP-GGPARPARPPTTAGPPAPAPPAA---------PA 2776

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  204 TGPTQETQAPFIAKRVEVVEEDGPSEKSQDPPALArstpgsnsadggrTKASRAIWIECLPSMPSPAGSQELRSSPGNKD 283
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV-------------LAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  284 KEAPCSRELqrdlageEAFRAPNTDAARSSAqlSDGNVGSGATGSRPEGlaavdigSERGRLCAAASFASFLEDQDGHSA 363
Cdd:PHA03247 2844 GPPPPSLPL-------GGSVAPGGDVRRRPP--SRSPAAKPAAPARPPV-------RRLARPAVSRSTESFALPPDQPER 2907

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  364 NSQ-SCKPRPAAISSSATSVSAVPADRKSNSTAAQEDAKADPKGAlADYEGKDVATRVGEAWQERPGAPRGGQGDPAVPA 442
Cdd:PHA03247 2908 PPQpQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGA-GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR 2986

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  443 QQPADPSTPERQSSPSG-----SEQLVRRESCGSSVL--------TDFEGKDVATKV-GEAWQDRPGAPRGGQGDPAVPT 508
Cdd:PHA03247 2987 EAPASSTPPLTGHSLSRvsswaSSLALHEETDPPPVSlkqtlwppDDTEDSDADSLFdSDSERSDLEALDPLPPEPHDPF 3066

                         490       500
                  ....*....|....*....|.
gi 296010961  509 QQPADPSTPEQQNSPSGSEQF 529
Cdd:PHA03247 3067 AHEPDPATPEAGARESPSSQF 3087
 
Name Accession Description Interval E-value
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
 631-687 8.11e-12

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 60.48  E-value: 8.11e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 296010961   631 ICTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKC 687
Cdd:smart00132   1 KCAGCGKPIYGTERV-LRALGKVWHPECFKCATCGKPLSG--DTFFEKDGKLYCKDC 54
LIM cd08368
LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains ...
 632-688 3.32e-08

LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] (where X denotes any amino acid).


Pssm-ID: 259829 [Multi-domain]  Cd Length: 53  Bit Score: 50.39  E-value: 3.32e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 296010961 632 CTYCNREIRDcpKITLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCY 688
Cdd:cd08368    1 CAGCGKPIEG--RELLRALGKKWHPECFKCAECGKPLGG--DSFYEKDGKPYCEKCY 53
LIM pfam00412
LIM domain; This family represents two copies of the LIM structural domain.
 632-692 5.38e-07

LIM domain; This family represents two copies of the LIM structural domain.


Pssm-ID: 395333 [Multi-domain]  Cd Length: 57  Bit Score: 46.94  E-value: 5.38e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296010961  632 CTYCNREIRDCPKITLehLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCYEKLF 692
Cdd:pfam00412   1 CAGCNRPIYDRELVRA--LGKVWHPECFRCAVCGKPLTT--GDFYEKDGKLYCKHDYYKLF 57
PHA03247 PHA03247
large tegument protein UL36; Provisional
 56-529 2.51e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961   56 PSGRSRATSFSSAGEVPKPRPPSTR-APTGYIIR-----GVFTKPIDSSSQPQQQFPKAngTPKSAASLVRTAN--AGPP 127
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRdDPAPGRVSrprraRRLGRAAQASSPPQRPRRRA--ARPTVGSLTSLADppPPPP 2706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  128 RPSSSGYKMTTEDYKKLAPYNIRRSSTSGD----TEEEEEEEVVPfSSDEQKRRSEAASGVLRRTAPREhsyvlsaakKS 203
Cdd:PHA03247 2707 TPEPAPHALVSATPLPPGPAAARQASPALPaapaPPAVPAGPATP-GGPARPARPPTTAGPPAPAPPAA---------PA 2776

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  204 TGPTQETQAPFIAKRVEVVEEDGPSEKSQDPPALArstpgsnsadggrTKASRAIWIECLPSMPSPAGSQELRSSPGNKD 283
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV-------------LAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  284 KEAPCSRELqrdlageEAFRAPNTDAARSSAqlSDGNVGSGATGSRPEGlaavdigSERGRLCAAASFASFLEDQDGHSA 363
Cdd:PHA03247 2844 GPPPPSLPL-------GGSVAPGGDVRRRPP--SRSPAAKPAAPARPPV-------RRLARPAVSRSTESFALPPDQPER 2907

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  364 NSQ-SCKPRPAAISSSATSVSAVPADRKSNSTAAQEDAKADPKGAlADYEGKDVATRVGEAWQERPGAPRGGQGDPAVPA 442
Cdd:PHA03247 2908 PPQpQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGA-GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR 2986

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  443 QQPADPSTPERQSSPSG-----SEQLVRRESCGSSVL--------TDFEGKDVATKV-GEAWQDRPGAPRGGQGDPAVPT 508
Cdd:PHA03247 2987 EAPASSTPPLTGHSLSRvsswaSSLALHEETDPPPVSlkqtlwppDDTEDSDADSLFdSDSERSDLEALDPLPPEPHDPF 3066

                         490       500
                  ....*....|....*....|.
gi 296010961  509 QQPADPSTPEQQNSPSGSEQF 529
Cdd:PHA03247 3067 AHEPDPATPEAGARESPSSQF 3087
 
Name Accession Description Interval E-value
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
 631-687 8.11e-12

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 60.48  E-value: 8.11e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 296010961   631 ICTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKC 687
Cdd:smart00132   1 KCAGCGKPIYGTERV-LRALGKVWHPECFKCATCGKPLSG--DTFFEKDGKLYCKDC 54
LIM cd08368
LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains ...
 632-688 3.32e-08

LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] (where X denotes any amino acid).


Pssm-ID: 259829 [Multi-domain]  Cd Length: 53  Bit Score: 50.39  E-value: 3.32e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 296010961 632 CTYCNREIRDcpKITLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCY 688
Cdd:cd08368    1 CAGCGKPIEG--RELLRALGKKWHPECFKCAECGKPLGG--DSFYEKDGKPYCEKCY 53
LIM pfam00412
LIM domain; This family represents two copies of the LIM structural domain.
 632-692 5.38e-07

LIM domain; This family represents two copies of the LIM structural domain.


Pssm-ID: 395333 [Multi-domain]  Cd Length: 57  Bit Score: 46.94  E-value: 5.38e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296010961  632 CTYCNREIRDCPKITLehLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCYEKLF 692
Cdd:pfam00412   1 CAGCNRPIYDRELVRA--LGKVWHPECFRCAVCGKPLTT--GDFYEKDGKLYCKHDYYKLF 57
LIM2_FHL cd09345
The second LIM domain of Four and a half LIM domains protein (FHL); The second LIM domain of ...
 632-688 8.31e-05

The second LIM domain of Four and a half LIM domains protein (FHL); The second LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188731 [Multi-domain]  Cd Length: 54  Bit Score: 40.74  E-value: 8.31e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 296010961 632 CTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGdllDQIFIHRD-TIHCGKCY 688
Cdd:cd09345    1 CKACGKAIMPGSKK-MEYKGKFWHEKCFTCSECKKPIG---TKSFIPKDdKIYCVPCY 54
LIM2_FHL1 cd09424
The second LIM domain of Four and a half LIM domains protein 1 (FHL1); The second LIM domain ...
 646-692 1.97e-04

The second LIM domain of Four and a half LIM domains protein 1 (FHL1); The second LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188808  Cd Length: 58  Bit Score: 39.74  E-value: 1.97e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 296010961 646 TLEHLGICCHEYCFKCGICSKPMGDlldQIFIHRDT-IHCGKCYEKLF 692
Cdd:cd09424   14 NVEYKGNVWHKDCFTCSNCKQPIGT---KSFFPKGEdFYCVPCHEKKF 58
LIM1_Testin_like cd09340
The first LIM domain of Testin-like family; The first LIM domain of Testin_like family: This ...
 632-688 4.49e-04

The first LIM domain of Testin-like family; The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188726  Cd Length: 58  Bit Score: 38.74  E-value: 4.49e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961 632 CTYCNREIR-DCPKITLEHLG--ICCHEYCFKCGICSKPMGDLLdqIFIHRDTIHCGKCY 688
Cdd:cd09340    1 CEKCKEPINpGEVAVFAERAGedACWHPGCFVCETCNELLVDLI--YFYHDGKIYCGRHY 58
LIM1_FHL1 cd09344
The first LIM domain of Four and a half LIM domains protein 1; The first LIM domain of Four ...
 632-687 1.62e-03

The first LIM domain of Four and a half LIM domains protein 1; The first LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188730  Cd Length: 54  Bit Score: 37.04  E-value: 1.62e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 296010961 632 CTYCNREIRDCPKiTLEHLGICCHEYCFKCGICSKPmgdLLDQIFIHRDT-IHCGKC 687
Cdd:cd09344    1 CAECRKPIGADSK-ELHHKNRYWHETCFRCAKCYKP---LANEPFVAKDNkILCGKC 53
PHA03247 PHA03247
large tegument protein UL36; Provisional
 56-529 2.51e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961   56 PSGRSRATSFSSAGEVPKPRPPSTR-APTGYIIR-----GVFTKPIDSSSQPQQQFPKAngTPKSAASLVRTAN--AGPP 127
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRdDPAPGRVSrprraRRLGRAAQASSPPQRPRRRA--ARPTVGSLTSLADppPPPP 2706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  128 RPSSSGYKMTTEDYKKLAPYNIRRSSTSGD----TEEEEEEEVVPfSSDEQKRRSEAASGVLRRTAPREhsyvlsaakKS 203
Cdd:PHA03247 2707 TPEPAPHALVSATPLPPGPAAARQASPALPaapaPPAVPAGPATP-GGPARPARPPTTAGPPAPAPPAA---------PA 2776

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  204 TGPTQETQAPFIAKRVEVVEEDGPSEKSQDPPALArstpgsnsadggrTKASRAIWIECLPSMPSPAGSQELRSSPGNKD 283
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV-------------LAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  284 KEAPCSRELqrdlageEAFRAPNTDAARSSAqlSDGNVGSGATGSRPEGlaavdigSERGRLCAAASFASFLEDQDGHSA 363
Cdd:PHA03247 2844 GPPPPSLPL-------GGSVAPGGDVRRRPP--SRSPAAKPAAPARPPV-------RRLARPAVSRSTESFALPPDQPER 2907

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  364 NSQ-SCKPRPAAISSSATSVSAVPADRKSNSTAAQEDAKADPKGAlADYEGKDVATRVGEAWQERPGAPRGGQGDPAVPA 442
Cdd:PHA03247 2908 PPQpQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGA-GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR 2986

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  443 QQPADPSTPERQSSPSG-----SEQLVRRESCGSSVL--------TDFEGKDVATKV-GEAWQDRPGAPRGGQGDPAVPT 508
Cdd:PHA03247 2987 EAPASSTPPLTGHSLSRvsswaSSLALHEETDPPPVSlkqtlwppDDTEDSDADSLFdSDSERSDLEALDPLPPEPHDPF 3066

                         490       500
                  ....*....|....*....|.
gi 296010961  509 QQPADPSTPEQQNSPSGSEQF 529
Cdd:PHA03247 3067 AHEPDPATPEAGARESPSSQF 3087
LIM2_FHL2 cd09426
The second LIM domain of Four and a half LIM domains protein 2 (FHL2); The second LIM domain ...
 632-690 7.33e-03

The second LIM domain of Four and a half LIM domains protein 2 (FHL2); The second LIM domain of Four and a half LIM domains protein 2 (FHL2): FHL2 is one of the best studied FHL proteins. FHL2 expression is most abundant in the heart, and in brain, liver and lung to a lesser extent. FHL2 participates in a wide range of cellular processes, such as transcriptional regulation, signal transduction, and cell survival by binding to various protein partners. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. Although FHL2 is abundantly expressed in heart, the fhl2 null mice are viable and had no detectable abnormal cardiac phenotype. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to s upport the assembly of multimeric protein complexes.


Pssm-ID: 188810  Cd Length: 57  Bit Score: 35.41  E-value: 7.33e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961 632 CTYCNREIRDCPKiTLEHLGICCHEYCFKCGICSKPMGdllDQIFIHRDTIH-CGKCYEK 690
Cdd:cd09426    1 CSECKKTIMPGTR-KMEYKGNSWHETCFICQRCQQPIG---TKSFIPKDNQNfCVPCYEK 56
LIM1_Prickle cd09415
The first LIM domain of Prickle; The first LIM domain of Prickle: Prickle contains three ...
 651-686 7.78e-03

The first LIM domain of Prickle; The first LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188799  Cd Length: 59  Bit Score: 35.31  E-value: 7.78e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 296010961 651 GICCHEYCFKCGICSKPMGDLldqIFIHRD-TIHCGK 686
Cdd:cd09415   23 GACWHPACFVCSTCKELLVDL---IYFYQDgKVYCGR 56
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 187-526 7.80e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.77  E-value: 7.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  187 RTAPREHSYVLSAAKKSTGPTQETQAPFIAKRV--EVVEEDGPSEKSQDPPALARSTPGSNSADGGRTKASRAiwiecLP 264
Cdd:PHA03307   98 ASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPapDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR-----QA 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  265 SMPSPAGSQELRSsPGNKDKEAPCSRELQRDLAGEEAFRAPNTDAARSSAQLS-----DGNVGSGATGSRPEGLAAVDIG 339
Cdd:PHA03307  173 ALPLSSPEETARA-PSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPgrsaaDDAGASSSDSSSSESSGCGWGP 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  340 SERGRLCAAASFASFLEDQDGHSANSQSCKPRPAAISSSATSVSAVPADRKSNSTAAQEDAKADPKGALADYEGKDVATR 419
Cdd:PHA03307  252 ENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSS 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296010961  420 VGEAwqerPGAPRGGQGDPAVPAQQPADPSTPERQSSPSGSEQLVRRESCGSSVLTDFEGKDVATKVGEAWQDRPGAPRG 499
Cdd:PHA03307  332 SSES----SRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407

                         330       340       350
                  ....*....|....*....|....*....|.
gi 296010961  500 GQGDPAV----PTQQPADPSTPEQQNSPSGS 526
Cdd:PHA03307  408 PAGRPRPspldAGAASGAFYARYPLLTPSGE 438
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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