NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|300166715|gb|EFJ33321|]
View 

hypothetical protein SELMODRAFT_84711 [Selaginella moellendorffii]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
 9-58 3.67e-21

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


:

Pssm-ID: 407095  Cd Length: 50  Bit Score: 77.19  E-value: 3.67e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 300166715   9 SDRRAMVGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCR 58
Cdd:pfam16851  1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
 
Name Accession Description Interval E-value
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
 9-58 3.67e-21

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


Pssm-ID: 407095  Cd Length: 50  Bit Score: 77.19  E-value: 3.67e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 300166715   9 SDRRAMVGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCR 58
Cdd:pfam16851  1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
stomagen-like cd22743
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
 15-59 1.51e-20

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


Pssm-ID: 439359  Cd Length: 45  Bit Score: 75.57  E-value: 1.51e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 300166715 15 VGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCRK 59
Cdd:cd22743   1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
PLN03207 PLN03207
stomagen; Provisional
 9-59 1.56e-20

stomagen; Provisional


Pssm-ID: 215632  Cd Length: 113  Bit Score: 77.20  E-value: 1.56e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300166715   9 SDRRAMVGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCRK 59
Cdd:PLN03207  63 SSRRLMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
 
Name Accession Description Interval E-value
Stomagen pfam16851
Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator ...
 9-58 3.67e-21

Stomagen; Stomagen (epidermal patterning factor-like protein 9) acts as a positive regulator of stomatal development.


Pssm-ID: 407095  Cd Length: 50  Bit Score: 77.19  E-value: 3.67e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 300166715   9 SDRRAMVGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCR 58
Cdd:pfam16851  1 SARRLMIGSTAPTCTYNECRGCRTKCRAEQVPVDANDPMNSAYHYRCVCH 50
stomagen-like cd22743
stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 ...
 15-59 1.51e-20

stomagen domain family; Stomagen, also called EPIDERMAL PATTERNING FACTOR-like protein 9 (EPFL9 or STOMAGEN), or EPF-like protein 9, is plant peptide hormone expressed in the mesophyll, that acts as a positive regulator of stomatal density and patterning. It competes with EPIDERMAL PATTERNING FACTORS 2 (EPF2) for binding to the ERECTA receptor, while it also competes with EPF1 and EPF2 for binding to TOO MANY MOUTHS (TMM), both receptors for the EPF peptides to initiate a signal cascade for stomatal development. EPFL9 cannot be cleaved by the protease CO2 RESPONSE SECRETED PROTEASE (CRSP). Stomagen is composed of a loop and a scaffold containing three disulphide bonds. It belongs to the fold-family of small globular knottins.


Pssm-ID: 439359  Cd Length: 45  Bit Score: 75.57  E-value: 1.51e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 300166715 15 VGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCRK 59
Cdd:cd22743   1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45
PLN03207 PLN03207
stomagen; Provisional
 9-59 1.56e-20

stomagen; Provisional


Pssm-ID: 215632  Cd Length: 113  Bit Score: 77.20  E-value: 1.56e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300166715   9 SDRRAMVGSTAPSCTYNECRDCKTECRAEQVPLNGRNPKESAYRYLCVCRK 59
Cdd:PLN03207  63 SSRRLMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYKCVCHR 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH