|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 559.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLL 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
19-374 |
1.97e-118 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 349.47 E-value: 1.97e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 19 FIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFFF*VYMH 98
Cdd:COG1290 27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 99 IGRNIYYGSY--THIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVSNATL 176
Cdd:COG1290 107 MFRGFFYGAYkkPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 177 NRFYSLHYL-LPFLLVALALIHLLLLHMEGSHNPIGI-RSDINK---IPFHSYYSLKDLYGAMILIMSISFLVF*APnlF 251
Cdd:COG1290 187 NRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPeRKKTEKvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--I 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 252 GDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIP--NKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKIFFWIL 329
Cdd:COG1290 265 NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 308912672 330 IADFLILTLIGKEPveEPYIFVGQVASILYFALFLIILPLIGKLE 374
Cdd:COG1290 345 IVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-188 |
1.95e-76 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 234.96 E-value: 1.95e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 10 PVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTF 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 90 MFFF*VYMHIGRNIYYGSY--THIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180
....*....|....*....|.
gi 308912672 168 GYSVSNATLNRFYSLHYLLPF 188
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPF 181
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-188 |
7.52e-69 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 215.32 E-value: 7.52e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 19 FIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFFF*VYMH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 99 IGRNIYYG--SYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVSNATL 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170
....*....|..
gi 308912672 177 NRFYSLHYLLPF 188
Cdd:pfam00033 161 TRFFSLHFLLPF 172
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
248-308 |
4.09e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 49.41 E-value: 4.09e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 308912672 248 PNLFGDPenfiqANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYL 308
Cdd:TIGR01156 59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFI 114
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 559.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLL 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 552.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLL 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
5-381 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 545.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 5 VRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIH 84
Cdd:MTH00022 3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 85 INGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEW 164
Cdd:MTH00022 83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 165 VWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLV 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 245 F*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKI 324
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 308912672 325 FFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLLFNK 381
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
6-369 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 540.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 6 RKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHI 85
Cdd:MTH00191 2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 86 NGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWV 165
Cdd:MTH00191 82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 166 WGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLVF 245
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 246 *APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKIF 325
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 308912672 326 FWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPL 369
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 533.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLL 378
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
5-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 532.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 5 VRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIH 84
Cdd:MTH00131 4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 85 INGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEW 164
Cdd:MTH00131 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 165 VWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLV 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 245 F*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 308912672 325 FFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLL 378
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
5-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 529.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 5 VRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIH 84
Cdd:MTH00100 4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 85 INGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEW 164
Cdd:MTH00100 84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 165 VWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLV 244
Cdd:MTH00100 164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 245 F*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKI 324
Cdd:MTH00100 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 308912672 325 FFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLL 378
Cdd:MTH00100 324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-380 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 529.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00145 1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00145 81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFaLFLIILPLIGKLENGLLFN 380
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF-LFFLILPLVQKLWDNILDY 379
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 528.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 12 LSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMF 91
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 92 FF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSV 171
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 172 SNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLVF*APNLF 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 252 GDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKIFFWILIA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330 340 350
....*....|....*....|....*....|....*
gi 308912672 332 DFLILTLIGKEPVEEPYIFVGQVASILYFALFLII 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
2-380 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 511.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 2 TRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLR 81
Cdd:MTH00034 1 TGPLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 82 SIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNL 161
Cdd:MTH00034 81 NIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 162 VEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSIS 241
Cdd:MTH00034 161 VQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 242 FLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSL 321
Cdd:MTH00034 241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 308912672 322 SKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIILPLIGKLENGLLFN 380
Cdd:MTH00034 321 SQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIFS 379
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-379 |
1.50e-177 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 498.82 E-value: 1.50e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00016 1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFLIIlPLIGKLENGLLF 379
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN-PLLMKLWDKLLK 378
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-378 |
3.04e-158 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 450.14 E-value: 3.04e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 1 MTRAVRKENPVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLL 80
Cdd:MTH00224 1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 81 RSIHINGTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSN 160
Cdd:MTH00224 81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 161 LVEWVWGGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSI 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 241 SFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRS 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 308912672 321 LSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVASILYFALFlIILPLIGKLENGLL 378
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLL 377
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
7-375 |
9.52e-131 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 380.44 E-value: 9.52e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 7 KENPVLSIVNEMfIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHIN 86
Cdd:MTH00033 4 RKTGLLEPVNDI-IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHAN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 87 GTFMFFF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVW 166
Cdd:MTH00033 83 GASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 167 GGYSVSNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMIL--IMSISFLV 244
Cdd:MTH00033 163 GGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILfgVFVIIGIE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 245 F*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKI 324
Cdd:MTH00033 243 PRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKF 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 308912672 325 FFWILIADFLILTLIGKEPV-EEPYIFVGQVASILYFALFLIILPLIGKLEN 375
Cdd:MTH00033 323 FFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
19-374 |
1.97e-118 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 349.47 E-value: 1.97e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 19 FIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFFF*VYMH 98
Cdd:COG1290 27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 99 IGRNIYYGSY--THIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVSNATL 176
Cdd:COG1290 107 MFRGFFYGAYkkPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 177 NRFYSLHYL-LPFLLVALALIHLLLLHMEGSHNPIGI-RSDINK---IPFHSYYSLKDLYGAMILIMSISFLVF*APnlF 251
Cdd:COG1290 187 NRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPeRKKTEKvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--I 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 252 GDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIP--NKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKIFFWIL 329
Cdd:COG1290 265 NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAF 344
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 308912672 330 IADFLILTLIGKEPveEPYIFVGQVASILYFALFLIILPLIGKLE 374
Cdd:COG1290 345 IVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
13-367 |
6.72e-111 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 328.82 E-value: 6.72e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 13 SIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFF 92
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 93 F*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVS 172
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 173 NATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFlVF*APNLFG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIF-SLFYPFNLG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 253 DPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FlrgLSFRSLSKIFFWILIAD 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYT---SCLNKLNKFLVFSFIVV 316
|
330 340 350
....*....|....*....|....*....|....*
gi 308912672 333 FLILTLIGKEPVEEPYIFVGQVASILYFALFLIIL 367
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
12-365 |
1.31e-80 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 251.44 E-value: 1.31e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 12 LSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMF 91
Cdd:MTH00046 2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 92 FF*VYMHIGRNIYYGSYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSV 171
Cdd:MTH00046 82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 172 SNATLNRFYSLHYLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINK-IPFHSYYSLKDLYGAMILIMSISFLVF*APNL 250
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYSDvVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 251 FGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVaLLASILI*FFLPYLHk*flrGLSFRSLSK-IFFWIL 329
Cdd:MTH00046 242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFN-----GSSVYSVWRqVNFWLI 315
|
330 340 350
....*....|....*....|....*....|....*.
gi 308912672 330 IADFLILTLIGKEPVEEPYIFVGQVASILYFALFLI 365
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-188 |
1.95e-76 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 234.96 E-value: 1.95e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 10 PVLSIVNEMFIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTF 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 90 MFFF*VYMHIGRNIYYGSY--THIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180
....*....|....*....|.
gi 308912672 168 GYSVSNATLNRFYSLHYLLPF 188
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPF 181
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-188 |
7.52e-69 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 215.32 E-value: 7.52e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 19 FIDLPAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFFF*VYMH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 99 IGRNIYYG--SYTHIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVSNATL 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170
....*....|..
gi 308912672 177 NRFYSLHYLLPF 188
Cdd:pfam00033 161 TRFFSLHFLLPF 172
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
208-355 |
2.38e-44 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 150.49 E-value: 2.38e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 208 NPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLVF*APNLFGDPENFIQANPLVSPVHIRPEWYFLFAYAILRSIPN 287
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 308912672 288 KLGGVVALLASILI*FFLPYLHK*FLRGlSFRSLSKIFFWILIADFLILTLIGKEPVEEPYIFVGQVA 355
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
259-359 |
4.02e-43 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 145.70 E-value: 4.02e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 259 QANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYLHK*FLRGLSFRSLSKIFFWILIADFLILTL 338
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 308912672 339 IGKEPVEEPYIFVGQVASILY 359
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
23-187 |
5.26e-33 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 123.28 E-value: 5.26e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 23 PAPTNISYLWNFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFFF*VYMHIGRN 102
Cdd:PRK03735 33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 103 IYYGSYTHI--MVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVSNATLNRFY 180
Cdd:PRK03735 113 FFTGGYKKPreLNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192
|
....*...
gi 308912672 181 SLH-YLLP 187
Cdd:PRK03735 193 AIHvFFLP 200
|
|
| petB |
CHL00070 |
cytochrome b6 |
22-188 |
4.54e-29 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 112.51 E-value: 4.54e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 22 LPAPTNISYLwnFGSLLGLCLIVQIVTGIFLAMHYCPETNLAFFSIAHIMRDVNYGTLLRSIHINGTFMFFF*VYMHIGR 101
Cdd:CHL00070 26 VPPHVNIFYC--LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 102 NIYYGSYTHI--MVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWGGYSVSNATLNRF 179
Cdd:CHL00070 104 VYLTGGFKKPreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRF 183
|
170
....*....|
gi 308912672 180 YSLH-YLLPF 188
Cdd:CHL00070 184 YSLHtFVLPL 193
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
90-254 |
1.78e-27 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 106.56 E-value: 1.78e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 90 MFFF*VYMHIGRNIYYGSY--THIMVWNTGIVIFFLMMATAFIGYVLPWGQMSFWAATVITNFLSAIPYIGSNLVEWVWG 167
Cdd:pfam13631 2 IFIAAIYVHMLRIFFTGAYrkPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308912672 168 GYSVSNATLNRFYSLH-YLLPFLLVALALIHLLLLHMEGSHNPIGIRSDINKIPFHSYYSLKDLYGAMILIMSISFLVF* 246
Cdd:pfam13631 82 GPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQI 161
|
....*...
gi 308912672 247 APNLFGDP 254
Cdd:pfam13631 162 NPIWLGGP 169
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
232-308 |
3.57e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 52.49 E-value: 3.57e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 308912672 232 GAMILIMSISFLvf*APNLFGDPenfiqANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYL 308
Cdd:COG5679 47 GTIALCIGLAVL---DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
243-308 |
1.23e-07 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 50.77 E-value: 1.23e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 308912672 243 LVF*APNLFGDPenfiqANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYL 308
Cdd:CHL00058 54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFL 114
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
248-308 |
4.09e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 49.41 E-value: 4.09e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 308912672 248 PNLFGDPenfiqANPLVSPVHIRPEWYFLFAYAILRSIPNKLGGVVALLASILI*FFLPYL 308
Cdd:TIGR01156 59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFI 114
|
|
| |
