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Conserved domains on  [gi|311223462|gb|ADP76802|]
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cytochrome b, partial (mitochondrion) [Tupaia glis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 11-109 2.15e-77

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 232.22  E-value: 2.15e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00100  45 ILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVM 124

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00100 125 ATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 11-109 2.15e-77

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 232.22  E-value: 2.15e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00100  45 ILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVM 124

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00100 125 ATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 11-109 1.56e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 147.90  E-value: 1.56e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSY--LYLETWNIGVILLFA 88
Cdd:cd00284   37 ILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLL 116

                         90       100
                 ....*....|....*....|.
gi 311223462  89 TMATAFMGYVLPWGQMSFWGA 109
Cdd:cd00284  117 TMATAFMGYVLPWGQMSYWGA 137
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-109 8.12e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 143.78  E-value: 8.12e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSY-----LyleTWNIGVIL 85
Cdd:COG1290   54 ILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLL 130

                         90       100
                 ....*....|....*....|....
gi 311223462  86 LFATMATAFMGYVLPWGQMSFWGA 109
Cdd:COG1290  131 LLLTMAEAFTGYSLPWDQLSYWGA 154
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-109 3.53e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 136.74  E-value: 3.53e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462   11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYL--ETWNIGVILLFA 88
Cdd:pfam00033  28 ILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPreLTWVIGVILLVL 107

                          90       100
                  ....*....|....*....|.
gi 311223462   89 TMATAFMGYVLPWGQMSFWGA 109
Cdd:pfam00033 108 TMSTAFIGYVLPWGQMSYWGA 128
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 11-109 2.15e-77

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 232.22  E-value: 2.15e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00100  45 ILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVM 124

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00100 125 ATAFMGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 11-109 1.33e-69

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 212.45  E-value: 1.33e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00119  46 ILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLM 125

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00119 126 ATAFVGYVLPWGQMSFWGA 144
CYTB MTH00156
cytochrome b; Provisional
 11-109 3.25e-67

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 205.79  E-value: 3.25e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00156  35 IITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVM 114

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00156 115 ATAFLGYVLPWGQMSFWGA 133
CYTB MTH00074
cytochrome b; Provisional
 11-109 3.45e-67

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 206.46  E-value: 3.45e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00074  46 IITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVM 125

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00074 126 ATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 11-109 4.81e-67

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 206.04  E-value: 4.81e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00131  45 ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVM 124

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00131 125 MTAFVGYVLPWGQMSFWGA 143
CYTB MTH00191
cytochrome b; Provisional
 11-109 4.99e-66

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 202.84  E-value: 4.99e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00191  42 ILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSM 121

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00191 122 ATAFLGYVLPWGQMSFWGA 140
CYTB MTH00145
cytochrome b; Provisional
 11-109 2.03e-61

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 191.66  E-value: 2.03e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00145  46 ILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSM 125

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00145 126 GTAFLGYVLPWGQMSFWGA 144
CYTB MTH00034
cytochrome b; Validated
 11-109 4.99e-61

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 190.69  E-value: 4.99e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00034  45 IITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTM 124

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00034 125 LTAFVGYVLPWGQMSFWAA 143
CYTB MTH00016
cytochrome b; Validated
 11-109 2.39e-59

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 186.04  E-value: 2.39e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00016  46 ILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTM 125

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00016 126 ATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 11-109 7.59e-52

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 166.80  E-value: 7.59e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00022  44 IITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTM 123

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00022 124 ATAFMGYVLPWGQMSFWGA 142
CYTB MTH00224
cytochrome b; Provisional
 11-109 8.96e-50

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 161.63  E-value: 8.96e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00224  46 VLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTM 125

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00224 126 ATAFLGYVLPWGQMSFWGA 144
CYTB MTH00053
cytochrome b; Provisional
 11-109 3.81e-49

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 159.87  E-value: 3.81e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00053  46 IITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMI 125

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00053 126 LTAFIGYVLPWGQMSFWAA 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 11-109 1.56e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 147.90  E-value: 1.56e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSY--LYLETWNIGVILLFA 88
Cdd:cd00284   37 ILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLL 116

                         90       100
                 ....*....|....*....|.
gi 311223462  89 TMATAFMGYVLPWGQMSFWGA 109
Cdd:cd00284  117 TMATAFMGYVLPWGQMSYWGA 137
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-109 8.12e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 143.78  E-value: 8.12e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSY-----LyleTWNIGVIL 85
Cdd:COG1290   54 ILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLL 130

                         90       100
                 ....*....|....*....|....
gi 311223462  86 LFATMATAFMGYVLPWGQMSFWGA 109
Cdd:COG1290  131 LLLTMAEAFTGYSLPWDQLSYWGA 154
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-109 3.53e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 136.74  E-value: 3.53e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462   11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYL--ETWNIGVILLFA 88
Cdd:pfam00033  28 ILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPreLTWVIGVILLVL 107

                          90       100
                  ....*....|....*....|.
gi 311223462   89 TMATAFMGYVLPWGQMSFWGA 109
Cdd:pfam00033 108 TMSTAFIGYVLPWGQMSYWGA 128
CYTB MTH00033
cytochrome b; Provisional
 11-109 7.43e-40

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 135.84  E-value: 7.43e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00033  42 ILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMM 121

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00033 122 LTAFIGYVLPWGQMSFWAA 140
CYTB MTH00086
cytochrome b; Provisional
 11-109 9.94e-34

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 119.27  E-value: 9.94e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00086  34 ILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVM 113

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00086 114 MEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 11-109 6.04e-26

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 98.52  E-value: 6.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLETWNIGVILLFATM 90
Cdd:MTH00046  36 VLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVM 115

                         90
                 ....*....|....*....
gi 311223462  91 ATAFMGYVLPWGQMSFWGA 109
Cdd:MTH00046 116 VEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 11-107 4.88e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.22  E-value: 4.88e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLE--TWNIGVILLFA 88
Cdd:PRK03735  56 ILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFV 135

                         90
                 ....*....|....*....
gi 311223462  89 TMATAFMGYVLPWGQMSFW 107
Cdd:PRK03735 136 TVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 11-107 4.34e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 70.13  E-value: 4.34e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311223462  11 IITGLFLAMHYTADTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFMCLFLHVGRGLYYGSYLYLE--TWNIGVILLFA 88
Cdd:CHL00070  48 VATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVL 127

                         90
                 ....*....|....*....
gi 311223462  89 TMATAFMGYVLPWGQMSFW 107
Cdd:CHL00070 128 TVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
54-109 6.83e-13

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 61.10  E-value: 6.83e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 311223462   54 SMFFMCLFLHVGRGLYYGSYLYLE--TWNIGVILLFATMATAFMGYVLPWGQMSFWGA 109
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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