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Conserved domains on  [gi|332688422|gb|AEE89424|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Mammuthus columbi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.47e-147

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 419.64  E-value: 1.47e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 332688422 321 KHTMMLPTLITLSNMLLPLTPMISMLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.47e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 419.64  E-value: 1.47e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 332688422 321 KHTMMLPTLITLSNMLLPLTPMISMLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-245 3.30e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 3.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   7 SLILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWS 85
Cdd:COG1007  106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  86 IMKMTNPVASNVALMALMT------------KLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTN--- 150
Cdd:COG1007  185 LAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFpgl 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 151 ----TNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILA-- 220
Cdd:COG1007  265 aadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILll 344

                        250       260
                 ....*....|....*....|....*...
gi 332688422 221 ---NTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:COG1007  345 srkGGEAEEIEDLAGLARRSPLLALAMT 372
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 4.62e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 4.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   23 SSHWLTAWMGLEMNMLTMIP-ILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNPVASNVA--- 98
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   99 --------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILL-TWQKLAPL-----SLLYQMATYTNTNLIYLSGLLSILI 164
Cdd:pfam00361  81 llllflliLVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  165 GGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTL-----MWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIrdyggLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 332688422  236 KTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMI 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 2.41e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.61  E-value: 2.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   14 LAGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   93 VASNVA------------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQM-------ATYTNTNL 153
Cdd:TIGR01770 192 LSNGMLnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  154 IYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTL----TLLNLAIYILLTLSIFMILANTLTT---- 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYkdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332688422  226 --SMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLI 297
Cdd:TIGR01770 352 ieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.47e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 419.64  E-value: 1.47e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 332688422 321 KHTMMLPTLITLSNMLLPLTPMISMLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 1.04e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 333.70  E-value: 1.04e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATyTNTNLIYLSGLL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*.
gi 332688422 321 KHTMMLPTLITLSNMLLPLTPMISML 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.06e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 303.38  E-value: 1.06e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 332688422 321 KHtMMLPTLITLSNMLLPLTPMISML 346
Cdd:MTH00070 321 TN-NLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 6.61e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 301.36  E-value: 6.61e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 332688422 321 KHTmMLPTLITLSNMLLPLTPMI 343
Cdd:MTH00112 321 KNT-LTATLTTLSTLLLPLSPMI 342
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-306 1.87e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 238.68  E-value: 1.87e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILP 306
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 9.37e-74

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 231.78  E-value: 9.37e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 332688422 321 KHTMMlPTLITLSNMLLPLTPMISML 346
Cdd:MTH00200 321 SNLLV-GLLLLLSILGLPLTPQLLFL 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-346 3.18e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 165.38  E-value: 3.18e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  81 sgqwsIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQmatYTNTNLIYLSGLL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY---LINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSsltILPSTNNMKMTWQFTNT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS---LMLNYNKNKWNLKKKKN 309

                        330       340
                 ....*....|....*....|....*.
gi 332688422 321 KHTMMLPTLITLSNMLLPLTPMISML 346
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-315 3.57e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 149.27  E-value: 3.57e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   4 LALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQ 83
Cdd:MTH00144   4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  84 WSIMKMtnpvasnvALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNT-NLIYLSGLLSI 162
Cdd:MTH00144  84 WFSMSL--------LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 163 LIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTlMWNKTPAMTI 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGL 234

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 332688422 243 MLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTW 315
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-298 1.46e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 144.92  E-value: 1.46e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   6 LSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTInlmysgQWS 85
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  86 IMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLLSILIG 165
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 166 GWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 332688422 246 TTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIY 298
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-336 1.28e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 123.63  E-value: 1.28e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   7 SLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTinLMYSGQWSI 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLYLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  87 MKMTNPVasnvaLMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLyqMATYTNTNLIYLSGLLSILIGG 166
Cdd:MTH00197  79 LLSVVLV-----ILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 167 WGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLMT 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 247 TLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYysslTILPSTNNMKMtwqFTNTKHTMML 326
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY----KSLILSNWMIN---FLMKINLLYS 304

                        330
                 ....*....|
gi 332688422 327 PTLITLSNML 336
Cdd:MTH00197 305 GLFILLMMML 314
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-311 1.46e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 105.50  E-value: 1.46e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  16 GTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALT-------------INLMYS 81
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINLVLN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  82 GQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATytNTNLIYLSGLLS 161
Cdd:MTH00196  85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 162 ILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNP----TLTLLNLAIYILLTLSIFMILA--NTLTTSMSSLTLMWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILalNVYKNLIIEFSGLSR 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332688422 236 KTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRL---IYYSSLTILPSTNNM 311
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIvkiLFFQANSFLLISTKI 321
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-219 4.77e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.54  E-value: 4.77e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   8 LILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSI 86
Cdd:MTH00199 102 LILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  87 MKMTNPVASNVA----LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIylSGLLSI 162
Cdd:MTH00199 181 QGINSILTGDVGkiliTISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLI--CAVLSI 258

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332688422 163 LIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNP----TLTLLNLAIYILLTLSIFMIL 219
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSII 319
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-245 3.30e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 3.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   7 SLILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWS 85
Cdd:COG1007  106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  86 IMKMTNPVASNVALMALMT------------KLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTN--- 150
Cdd:COG1007  185 LAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFpgl 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 151 ----TNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILA-- 220
Cdd:COG1007  265 aadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILll 344

                        250       260
                 ....*....|....*....|....*...
gi 332688422 221 ---NTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:COG1007  345 srkGGEAEEIEDLAGLARRSPLLALAMT 372
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 4.62e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 4.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   23 SSHWLTAWMGLEMNMLTMIP-ILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNPVASNVA--- 98
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   99 --------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILL-TWQKLAPL-----SLLYQMATYTNTNLIYLSGLLSILI 164
Cdd:pfam00361  81 llllflliLVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  165 GGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTL-----MWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIrdyggLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 332688422  236 KTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMI 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 2.41e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.61  E-value: 2.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   14 LAGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   93 VASNVA------------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQM-------ATYTNTNL 153
Cdd:TIGR01770 192 LSNGMLnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  154 IYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTL----TLLNLAIYILLTLSIFMILANTLTT---- 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYkdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332688422  226 --SMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLI 297
Cdd:TIGR01770 352 ieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-219 7.43e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 75.24  E-value: 7.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   7 SLILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWS 85
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  86 IMKMTNPVASNVA------------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATY----- 148
Cdd:PRK05777 186 FAGIAKALADGSGnsllllfglvflLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVafggl 265

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 332688422 149 --TNTNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTL----TLLNLAIYILLTLSIFMIL 219
Cdd:PRK05777 266 seDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGVI 342
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 6-192 3.59e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.11  E-value: 3.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   6 LSLILTTLLAGTLItMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRST---------EAATKYFMTQATASMMLMMALTI 76
Cdd:MTH00198 191 FALVLIVGLGGLLL-IESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCAL 269

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  77 NLMYSGQ--------WSIMKMTNPVASNVAL------MALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLL 142
Cdd:MTH00198 270 YFGFTGNegmlgtilSATLETTNIELRQGSLgylfitVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL 349

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 332688422 143 yqmatytnTNLIYLSGLL------SILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:MTH00198 350 --------TSLVITSKLLlsvaiiSLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 4.72e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 51.87  E-value: 4.72e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 332688422  291 YFYMRLIYYSSLTILPSTNNMKMTWQFTNTKHTMMLPTLITLSNMLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-301 6.36e-09

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 57.08  E-value: 6.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  13 LLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSI------ 86
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMadlaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  87 MKMTNPVASNVA----LMALMTKLGSAPFHFWVPE-----------VTQGVELTSGM--ILLTWQKLAPLSLLYQMATyt 149
Cdd:COG0651  196 LAELDPGLLLAAfallLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-- 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 150 ntnLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYI--------LLTLSIFMILAN 221
Cdd:COG0651  274 ---LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhalakaLLFLAAGAIERA 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 222 TLTTSMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSS 301
Cdd:COG0651  351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-298 2.65e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 2.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  50 PRSTEAATKYFMTQATASMMLMMAL--------TIN-----LMYSGQWSIMKMT---NPVASNVALMALMT-----KLGS 108
Cdd:PRK12667 160 GDAVEAAIKYALIGAVGTTLYFLALaflyatfgTLNmadlsAKIRGLSFPLTGGlagNPPLALGVALALALwaftiKAAI 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 109 APFHFWVPEV-----------TQGVELTSG---------MILLTWQKLAPLSLLYQmatytntNLIYLSGLLSILIGGWG 168
Cdd:PRK12667 240 FPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS-------PILIILGAVSAIIGALM 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 169 GLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYI--------LLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:PRK12667 313 MVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksLLFLASGVFIHAAGTRDIDELAGLGRKMPIA 392

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 332688422 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIY 298
Cdd:PRK12667 393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-245 3.10e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.54  E-value: 3.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  55 AATKYFMTQATASMMLMMALTINLMYSGQWS-----IMKMTNPVASNVALMALM-----TKLGSAPFHFWVPEV-TQGve 123
Cdd:COG1008  162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaeLAAAPLPLTAQLLLFLAFfiafaVKVPMFPFHTWLPDAhVEA-- 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 124 LTSGMILLTwqklaplSLLYQMATY---------------TNTNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMG 188
Cdd:COG1008  240 PTAGSVLLA-------GVLLKMGGYgllrfalplfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 332688422 189 WMLI-ILPFNPT------LTLLNLAIYI-LLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:COG1008  313 FVLLgIFALNPLglqgavLQMVSHGLITaALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFL 377
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-194 8.02e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.45  E-value: 8.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  48 TNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKM-------TNPVASNVALMAL----MTKLGSAPFHFWVP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptiLSSPLLTLILLLLllgaFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 117 E-----------------VTQGVELtsgmilltwqkLAPLSLLYQMATYTNTNLIYLsGLLSILIGGWGGLNQTQLRKIL 179
Cdd:COG1009  236 DamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVWLTVVAII-GAITALFAALIALAQTDIKRVL 303

                        170
                 ....*....|....*
gi 332688422 180 AYSSISHMGWMLIIL 194
Cdd:COG1009  304 AYSTVSQLGYMFLAL 318
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-199 2.19e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.09  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   55 AATKYFMTQATASMmLMMALTINLMYSGQWSI---MKMTNPVASNVA-------LMALMTKLGSAPFHFWVPEV-TQGVE 123
Cdd:TIGR01972 157 AAMKFFLYTLAGSL-LMLLAILGLYFLGGGTFdllELLNLPLPFGVQtwlflafFIAFAVKVPLFPLHTWLPDAhVEAPT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  124 LTSGMILLTWQKLAP-------LSLLYQMATYTNTNLIYLsGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI-ILP 195
Cdd:TIGR01972 236 AGSVILAGVLLKMGTygflrfnLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLgIFS 314


                  ....
gi 332688422  196 FNPT 199
Cdd:TIGR01972 315 FNEL 318
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-285 2.80e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 45.76  E-value: 2.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422   2 NPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLT---MIPILMKTtnprSTEAATKYFMTQATASMMLMMALTINL 78
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKKE----SRKASLKYFVLSAIGAYAMLYAIFLIY 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  79 MYSGQWSI----MKMTNPVASNVALMALM-------TKLGSAPFHFWVPEV-------------TQGVELTSGMILLTWQ 134
Cdd:PRK08668 172 AKTGTFDFadisQGLINDTSTGFALIVFLfllafgvAKAGIFPLHVWAPDAyseapqsfsavlsGQLSKLGAYGFLLVLY 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 135 KLAPLSLLYQMATYTNTNL----IYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTL-------L 203
Cdd:PRK08668 252 VLPGTKLFSEFGTYRGVPLfnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvF 331

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 204 NLAIY-ILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNsiiMPLTM 282
Cdd:PRK08668 332 NHALFkGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKG---MPITA 408


                 ...
gi 332688422 283 AIM 285
Cdd:PRK08668 409 FMA 411
PRK12650 PRK12650
DUF4040 family protein;
100-242 6.90e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 6.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 100 MALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTN-----LIYLSGLLSILIGGWGGLNQTQ 174
Cdd:PRK12650 216 VAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQKTD 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 175 LRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILA----NTLTTSMSSLTLMWNKTP----AMTI 242
Cdd:PRK12650 296 LKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHALFKSSLFMLIGvvdhQAGTRDIRRLGSLWRRMPftfvSVTI 375
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
49-217 2.97e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 42.35  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  49 NPRSTEAATKYFMTQATASMMLMMALTinLMY---SGQWSIMKMTNPVASNVALMALMT----------KLGSAPFHFWV 115
Cdd:PRK02504 156 DPRSNEAALKYLLIGAASSAIFLYGSS--LLYglsGGSTQLSAIALALITSPSLGLALAlvfviagiafKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 116 PEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTN-------LIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSfdeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190
                 ....*....|....*....|....*....|...
gi 332688422 189 WMLIILPFNP----TLTLLNLAIYILLTLSIFM 217
Cdd:PRK02504 314 FVMIGLVAGTeagyASMVFYLLAYLFMNLGAFA 346
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-210 6.91e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 41.40  E-value: 6.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  93 VASNVALMALMTKLGSAPFHFWVPE-----------------VTQGVELTSGMILLTWQKLAPLSLLYQMAtytntnLIY 155
Cdd:PRK08375 203 TAFGFVLLALALKAAVFPLHTWLPRaypaappvvtallsglvTKVAVYALIRIYFTVFGGDFRFALGLGWL------LAV 276

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 332688422 156 LsGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYIL 210
Cdd:PRK08375 277 L-ALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-297 1.22e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 40.37  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  51 RSTEAATKYFMTQATASMMLmmALTINLMY--SGQ----WSI------MKMTNPVASNVALMALMT----KLGSAPFHFW 114
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSIL--VYGFSWLYglSGGeielQEIvnglinTQMYNSPGISIALIFITVgigfKLSLAPFHQW 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 115 VPEVTQGVELTSGMILLTWQKLAPLSLLYQMAT----YTNT---NLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHM 187
Cdd:CHL00049 237 TPDVYEGSPTPVVAFLSVTSKVAASALATRIFDipfyFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQI 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 188 GWMLI-ILPFNP----TLTLLNLAIYILLTLSIFMILA----NTLTTSMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLS 258
Cdd:CHL00049 317 GYVIIgIIVGDSndgyASMITYMLFYIFMNLGTFACIVlfglRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 332688422 259 GFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLI 297
Cdd:CHL00049 397 GFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 4.02e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.86  E-value: 4.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  55 AATKYFMTQATASMM-----LMMAL-----TINLMYSGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFilvagLALALsgdtfTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPdahgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 332688422 121 GVELTSGMILLTWQKLAPLSLLYQMAT----YTNTNLIYLsGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPdahvYFAPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-211 4.33e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.88  E-value: 4.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 100 MALMTKLGSAPFHFWVPE-----------VTQGVELT---SGMILLTWqklaplSLLYQMATYTNTnLIYLSGLLSILIG 165
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKlggYGFIRFSW------PLLPEASEYFSP-LIQTLSLLAIIYG 286

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 332688422 166 GWGGLNQTQLRKILAYSSISHMGWMLIILpFNPTLTLLNLAIYILL 211
Cdd:MTH00217 287 SLTTCRQVDLKRIIAYSSVAHMGLVTLGI-FSHTIQGLVAAIFLML 331
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-298 4.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 38.92  E-value: 4.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  54 EAATKYFMTQATASMMLMMAltINLMYsGQWSIMKM-------------TNPVASNVALMALMTKLGSAPFHFWVPEV-T 119
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLG--IALLY-GQYGTLNMaylavkmsenptvVAKIALALFIAGLAMKSGAVPVHMWLPDAyP 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 120 QGVELTSGMILLTWQ----KLAPLSL-LYQMATYTNTN--LIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:PRK08376 249 AAPSSISAMLLVIKQaglyALARVLFsIYGPAINLATVgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLL 328

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422 193 ILPF------NPTLT-------------LLNLAIY-ILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLMTTLLSLG 252
Cdd:PRK08376 329 GLGVglaalgDPAMAsygeialaggiyhIVNHALYkALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIV 408

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 332688422 253 GLPPLSGFTPKWLMIHELTKNNSIIMPLTMaIMTLLNMYFYMRLIY 298
Cdd:PRK08376 409 GLPPFNGFASKWLIYESSALFNPILGVIAM-IGSVLTLASFVKVFH 453
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 99-227 6.03e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 6.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332688422  99 LMALMTKLGSAPFHFWVPEV-----TQGVELTSGmILLTWQKLAPLSLLYQMATYTNTNL---IYLSGLLSILIGGWGGL 170
Cdd:MTH00226 237 FLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAG-ILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATC 315

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 332688422 171 NQTQLRKILAYSSISHMGWMliilpfnpTLTLLNLAIyILLTLSIFMILANTLTTSM 227
Cdd:MTH00226 316 RQIDVKRLVAYSSVAHMGLV--------SITLVTHDI-IGLTGSIFIMLAHGIVSSL 363
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 158-192 6.04e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 38.26  E-value: 6.04e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 332688422 158 GLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:PRK05846 284 GVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTL 318
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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