|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.37e-93 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 282.10 E-value: 1.37e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 1 MFFNPSKLLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMI 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 81 KNNMNNFIdasfdwLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSYSLNTNYLMCIIVFCI 160
Cdd:MTH00160 81 NLMLFNNI------SSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 161 TIGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKF 240
Cdd:MTH00160 155 IIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKF 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 241 SIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKILNLKNYYA 320
Cdd:MTH00160 235 LLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI 314
|
330
....*....|..
gi 332712902 321 VLISNFISLSGL 332
Cdd:MTH00160 315 LNFLSFISLFGL 326
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
9.00e-31 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 117.80 E-value: 9.00e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 24 SNSWLGAWMGLEINLLSFIPLMMDTNNSM-STEASLKYFLTQALASALLLFS-VLIYMIKN-----NMNNFIDASFDWLT 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPrSSEAGMKYFLLTLLGSSILLFGiSLMYNYTGtlsfdELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 97 VIINTCLLL-----KSGAAPFHFWFPNVMEGLNWMNNLILL-TFQKLAPLTLLSYSLN--------TNYLMCIIVFCITI 162
Cdd:pfam00361 81 LLLLFLLILvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLylpsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 163 GSIGGLNQTSLRKMMAYSSINHLGWIFSAMLM----SESLWIFYFIMYCL---LTFIIVSNFNL--FKLYYLNQLFSMIN 233
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLfsaGLFLCAGSVIYrrVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 332712902 234 NSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-294 |
3.51e-28 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 114.06 E-value: 3.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLmmGSFITISSNSWLGAWMGLEINLLSFIPL-MMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYMIKNNMN 85
Cdd:COG1007 107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGIsLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 86 ------NFIDASFDWLTVIINTCLLL-----KSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAP----LTLLSYSLN-- 148
Cdd:COG1007 185 lagiaaALAAGGANSPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaalLRLLVEAFPgl 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 149 ----TNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWIFSAML----MSESLWIFYFIMYCLLT---FIIVS-- 215
Cdd:COG1007 265 aadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAagtpLGVSAALFYLLAYLFMNlgaFAVILll 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 216 ---NFNLFKLYYLNQLFSMINNSAIVkFSIFtnLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYI 292
Cdd:COG1007 345 srkGGEAEEIEDLAGLARRSPLLALA-MTIF--LLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421
|
..
gi 332712902 293 RI 294
Cdd:COG1007 422 RV 423
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
11-294 |
7.53e-25 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 104.64 E-value: 7.53e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 11 FITLMM----GSFITISSNSWLGAWMGLEINLLSFIPLM-MDTNNSMSTEASLKYFLTQALASALLLF-SVLIY------ 78
Cdd:TIGR01770 104 FYILLLfallGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFgISLIYgftgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 79 -----MIKNNMNNFIDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLA---PLTLLSYSL--- 147
Cdd:TIGR01770 184 nfedlLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 148 ----NTNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWI----FSAMLMSESLWIFYFIMYCLLT------FII 213
Cdd:TIGR01770 264 fseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYIliglLAGTLEGIKAVLFYIFIYALMSlgafgvLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 214 VSNFNLFKLYYLNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIR 293
Cdd:TIGR01770 344 LRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
.
gi 332712902 294 I 294
Cdd:TIGR01770 424 V 424
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-332 |
1.37e-93 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 282.10 E-value: 1.37e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 1 MFFNPSKLLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMI 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 81 KNNMNNFIdasfdwLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSYSLNTNYLMCIIVFCI 160
Cdd:MTH00160 81 NLMLFNNI------SSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 161 TIGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKF 240
Cdd:MTH00160 155 IIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKF 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 241 SIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKILNLKNYYA 320
Cdd:MTH00160 235 LLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI 314
|
330
....*....|..
gi 332712902 321 VLISNFISLSGL 332
Cdd:MTH00160 315 LNFLSFISLFGL 326
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-311 |
5.87e-77 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 239.75 E-value: 5.87e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNMNNF 87
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 88 IDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL---SYSLNTNYLMCIIVFCITIGS 164
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAILSILIGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 165 IGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFSIFT 244
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 332712902 245 NLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSAL-----MNYNEMSWNFK 311
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmfpsTNNMKMKWQFE 318
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-300 |
7.64e-75 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 234.33 E-value: 7.64e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 6 SKLLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNMN 85
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 86 NFIDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL---SYSLNTNYLMCIIVFCITI 162
Cdd:MTH00112 85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlmtSNSLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 163 GSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFSI 242
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 332712902 243 FTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSAL 300
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-330 |
5.60e-68 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 216.71 E-value: 5.60e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 10 FFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNMNNFID 89
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 90 ASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL---SYSLNTNYLMCIIVFCITIGSIG 166
Cdd:MTH00070 89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqiSHLLNSNLLIIMGLLSTLIGGWG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 167 GLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLT---FIIVSNFNLFKLYYLNQlfSMINNSAIVKFSIF 243
Cdd:MTH00070 169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTssmFLMLMNLNSTNINKLSS--SWSKNPTLTSMMML 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 244 TnLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKILNLKNYYAVLI 323
Cdd:MTH00070 247 T-LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLL 325
|
....*..
gi 332712902 324 SNFISLS 330
Cdd:MTH00070 326 SLTIILS 332
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
9-300 |
4.58e-64 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 206.58 E-value: 4.58e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 9 LFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNMNNFI 88
Cdd:MTH00135 8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 89 DASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSYSLNTNYLMCII--VFCITIGSIG 166
Cdd:MTH00135 88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITlgLTSTLVGGWG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 167 GLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFSIFTNL 246
Cdd:MTH00135 168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLIL 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 332712902 247 LSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSAL 300
Cdd:MTH00135 248 LSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTL 301
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
8-330 |
3.30e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 196.73 E-value: 3.30e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNMNNF 87
Cdd:MTH00200 7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 88 IDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL---SYSLNTNYLMCIIVFCITIGS 164
Cdd:MTH00200 87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLiqlAPALNSNILLLLGLLSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 165 IGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFSIFT 244
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 245 NLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKILNLKNYYAVLIS 324
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326
|
....*.
gi 332712902 325 NFISLS 330
Cdd:MTH00200 327 LLLLLS 332
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
8-330 |
1.65e-56 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 187.06 E-value: 1.65e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNMNNF 87
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 88 IDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSY---SLNTNYLMCIIVFCITIGS 164
Cdd:MTH00041 87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISisnLLNSNILILCGILSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 165 IGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFSIFT 244
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 245 NLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMS---WNFKILNLKNYYAV 321
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislFSWRNSGNITVYGV 326
|
....*....
gi 332712902 322 LISNFISLS 330
Cdd:MTH00041 327 ILSILSSIS 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
3-315 |
9.80e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 176.62 E-value: 9.80e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 3 FNPSKLLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKN 82
Cdd:MTH00144 2 SSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 83 NMnnfidasfDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSYSLNTNYLMCIIVFCI-- 160
Cdd:MTH00144 82 FS--------WFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISvl 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 161 --TIGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMiNNSAIV 238
Cdd:MTH00144 154 saLVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKT 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332712902 239 KFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSAL-MNYNEMSWNFKILNL 315
Cdd:MTH00144 233 GLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLsSSKSKKSNSSKVLNS 310
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-332 |
4.07e-52 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 175.35 E-value: 4.07e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 5 PSKLLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMIKNNM 84
Cdd:MTH00011 6 PTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 85 NNFIDASFdwltviINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSYSLN---TNYLMCIIVFCIT 161
Cdd:MTH00011 86 LKNITALM------LLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTShniLPMMTSMAAMSAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 162 IGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFS 241
Cdd:MTH00011 160 AGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 242 IFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKILNLKNyyAV 321
Cdd:MTH00011 240 LFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKT--KI 317
|
330
....*....|.
gi 332712902 322 LISNFISLSGL 332
Cdd:MTH00011 318 LISMCTLSLGL 328
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-329 |
9.33e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 155.60 E-value: 9.33e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 9 LFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSVLIYMiknnMNNFI 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF----SNLYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 89 DASFDWLTVIintCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLSY-SLNTNYLMCIIVFCITIGSIGG 167
Cdd:MTH00197 78 SLLSVVLVIL---GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFnSSSFMGLLICSVLSSLIGGIGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 168 LNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFNLFKLYYLNQLFSMINNSAIVKFSIFTNLL 247
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 248 SLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKILNLKNYYAVLISNFI 327
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMML 314
|
..
gi 332712902 328 SL 329
Cdd:MTH00197 315 PL 316
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-282 |
9.00e-31 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 117.80 E-value: 9.00e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 24 SNSWLGAWMGLEINLLSFIPLMMDTNNSM-STEASLKYFLTQALASALLLFS-VLIYMIKN-----NMNNFIDASFDWLT 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPrSSEAGMKYFLLTLLGSSILLFGiSLMYNYTGtlsfdELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 97 VIINTCLLL-----KSGAAPFHFWFPNVMEGLNWMNNLILL-TFQKLAPLTLLSYSLN--------TNYLMCIIVFCITI 162
Cdd:pfam00361 81 LLLLFLLILvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLylpsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 163 GSIGGLNQTSLRKMMAYSSINHLGWIFSAMLM----SESLWIFYFIMYCL---LTFIIVSNFNL--FKLYYLNQLFSMIN 233
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLfsaGLFLCAGSVIYrrVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 332712902 234 NSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-294 |
3.20e-28 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 112.43 E-value: 3.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 16 MGSFITISSNSWLGAWMGLEINLLS-FIPLMMDTNNSMSTEASLKYFLTQALASALLLFSV-------------LIYMIK 81
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 82 NNMNNFIDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL-SYSLNTNYLMCIIVFCI 160
Cdd:MTH00196 84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILvSIGLNVNILLIGGLFSL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 161 TIGSIGGLNQTSLRKMMAYSSINHLGWIFSAM-------LMSESLWIFYFIMYCLLTFIIVSNFNlFKLYYLNQLFSMIN 233
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsfesIQASLVYLFIYIIMSICVFSIILALN-VYKNLIIEFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 332712902 234 NSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRI 294
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-294 |
3.51e-28 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 114.06 E-value: 3.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLmmGSFITISSNSWLGAWMGLEINLLSFIPL-MMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYMIKNNMN 85
Cdd:COG1007 107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGIsLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 86 ------NFIDASFDWLTVIINTCLLL-----KSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAP----LTLLSYSLN-- 148
Cdd:COG1007 185 lagiaaALAAGGANSPLLLLGLVLVLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaalLRLLVEAFPgl 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 149 ----TNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWIFSAML----MSESLWIFYFIMYCLLT---FIIVS-- 215
Cdd:COG1007 265 aadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAagtpLGVSAALFYLLAYLFMNlgaFAVILll 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 216 ---NFNLFKLYYLNQLFSMINNSAIVkFSIFtnLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYI 292
Cdd:COG1007 345 srkGGEAEEIEDLAGLARRSPLLALA-MTIF--LLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421
|
..
gi 332712902 293 RI 294
Cdd:COG1007 422 RV 423
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
11-294 |
6.87e-27 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 110.30 E-value: 6.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 11 FITLMM----GSFITISSNSWLGAWMGLEI-NLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYMIKNNM 84
Cdd:PRK05777 105 FYLLVLfallGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMsLLYGATGSL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 85 N-----NFIDASFDWLTVIINTCLLL------KSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL---------- 143
Cdd:PRK05777 185 SfagiaKALADGSGNSLLLLFGLVFLlvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgg 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 144 SYSLNTNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWI----FYFIMYCLLT---FIIVS- 215
Cdd:PRK05777 265 LSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTlgaFGVISl 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 216 ----NFNLFKLYYLNQLFSMINNSAIVkFSIFtnLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFY 291
Cdd:PRK05777 345 lrrkGGEAESISDFAGLSKRSPLLAAV-MTIF--MLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421
|
...
gi 332712902 292 IRI 294
Cdd:PRK05777 422 LRV 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
12-294 |
4.59e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 105.10 E-value: 4.59e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 12 ITLMMGSFITISSNSWLGAWMGLEINLLS-FIPLMMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYMIKNNM----N 85
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCaLLYGLTGETsiqgI 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 86 NFIdASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLL-SYSLNTNYLMCIIVFCITIGS 164
Cdd:MTH00199 184 NSI-LTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILvQIGPVTNVVLICAVLSIIYGA 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 165 IGGLNQTSLRKMMAYSSINHLGWI--------FSAMLMSESLWIFYFIMYCLLTFIIVSnFNLFKlYYLNQLFSMINNSA 236
Cdd:MTH00199 263 IGALNQTKIKRLLAYSGIGHMGFIlfgvaigsFESIQASLIYMIIYVIMSICSFSIILS-LKLTK-GLIVEVSGLSRKNP 340
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 332712902 237 IVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRI 294
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
11-294 |
7.53e-25 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 104.64 E-value: 7.53e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 11 FITLMM----GSFITISSNSWLGAWMGLEINLLSFIPLM-MDTNNSMSTEASLKYFLTQALASALLLF-SVLIY------ 78
Cdd:TIGR01770 104 FYILLLfallGIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFgISLIYgftgsl 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 79 -----MIKNNMNNFIDASFDWLTVIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLA---PLTLLSYSL--- 147
Cdd:TIGR01770 184 nfedlLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfg 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 148 ----NTNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWI----FSAMLMSESLWIFYFIMYCLLT------FII 213
Cdd:TIGR01770 264 fseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYIliglLAGTLEGIKAVLFYIFIYALMSlgafgvLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 214 VSNFNLFKLYYLNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIR 293
Cdd:TIGR01770 344 LRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
.
gi 332712902 294 I 294
Cdd:TIGR01770 424 V 424
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
6-294 |
5.68e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 75.67 E-value: 5.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 6 SKLLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNN---------SMSTEASLKYFLTQALASALLLFSVL 76
Cdd:MTH00198 189 SGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQpgshfpspgNTPPESGLKYWILGAMSSGFYLFGCA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 77 IYM----IKNNMNNFIDASFDWLTV----------IINTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTL 142
Cdd:MTH00198 269 LYFgftgNEGMLGTILSATLETTNIelrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYIL 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 143 L-SYSLNTNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWIFSAM-------LMSESLWIFYFIMYCLLTFIIV 214
Cdd:MTH00198 349 LtSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 215 SNFNLFKLYY------------------LNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNL--- 273
Cdd:MTH00198 429 CTLEEFGTRTptsrqrdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFsss 508
|
330 340
....*....|....*....|....*
gi 332712902 274 --IWLMV--FMVTFTLITLYFYIRI 294
Cdd:MTH00198 509 lsIYYLValFAIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
8-296 |
1.04e-13 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 71.33 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLMMGSFITissNSWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYM------- 79
Cdd:COG0651 113 FLLLLAGMNGAFLT---GDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVgLLYGatgtlnm 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 80 --IKNNMNNFIDASFDWLTVIINTCLLLKSGAAPFHFWFPN-----------VMEGLnwMNNL----ILLTFQKLAPLTL 142
Cdd:COG0651 190 adLAARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGL--LTKVgvyaILRVLTLLFGADP 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 143 LSYSlnTNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWIFSAM-LMSESLW---IFYFIMYCL---LTFIIVS 215
Cdd:COG0651 268 ALFL--GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLagaLFHLLNHALakaLLFLAAG 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 216 N-FNLFKLYYLNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRI 294
Cdd:COG0651 346 AiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
..
gi 332712902 295 YY 296
Cdd:COG0651 426 FG 427
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-296 |
1.05e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 62.59 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 34 LEINLLSFIPLMMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYMIKNNMNNFI-------DASFDWLTVIINTCLLL 105
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVgLLYGVTGTLNMADlagalaeNPTVVTAFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 106 KSGAAPFHFWFPNVME-----------------GLNWMNNLILLTFqklaPLTLLSYSLNTNYLMCIIVFCITIGSIGGL 168
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPaappvvtallsglvtkvAVYALIRIYFTVF----GGDFRFALGLGWLLAVLALLSMLVGSLAAL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 169 NQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCL--------LTFIIVSNFNLFKLYYLNQLFSMINNSAIVKF 240
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 332712902 241 SIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYY 296
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
53-309 |
1.20e-10 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 62.38 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 53 STEASLKYFLTQALASALLLFSV-LIYMIKNNMNNFIDASfdwLTVIINTCLLL-------------KSGAAPFHFWFPN 118
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSsLLYGLSGGSTQLSAIA---LALITSPSLGLalalvfviagiafKISAVPFHQWTPD 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 119 VMEGLNWMNNLILLTFQKLAPLTLLSYSLNTNY----------LMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWI 188
Cdd:PRK02504 236 VYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFpsfdeqwkllFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFV 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 189 -----------FSAMlmseslwIFYFIMYcllTFIIVSNFNLFKLYYLNQLFSMINNSA-------IVKFSIFTNLLSLG 250
Cdd:PRK02504 316 miglvagteagYASM-------VFYLLAY---LFMNLGAFACVILFSLRTGTDQISDYAglyqkdpLLTLGLSLCLLSLG 385
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332712902 251 GLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIY----------YSSALMNYNEMSWN 309
Cdd:PRK02504 386 GIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIkmmvvkepqeMSDVVKNYPEINWN 454
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
55-297 |
6.34e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 57.03 E-value: 6.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 55 EASLKYFLTQALASALLLFSV-LIYMIKNNMNNFIDASFDWLTVIIN---------TCLLLKSGAAPFHFWFPN----VM 120
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIaLLYGQYGTLNMAYLAVKMSENPTVVakialalfiAGLAMKSGAVPVHMWLPDaypaAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 121 EGLNWMnnLILLTFQKLAPL-----TLLSYSLNTNYLMCIIVF--CIT--IGSIGGLNQTSLRKMMAYSSINHLGWI--- 188
Cdd:PRK08376 252 SSISAM--LLVIKQAGLYALarvlfSIYGPAINLATVGWVIIIlgCLTmfVGVAMAVVQKDVKRLLAYHSVSQIGYMllg 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 189 ---------------FSAMLMSESLW-IFYFIMYCLLTFIIVSnfnlfKLYY------LNQLFSMINNSAIVKFSIFTNL 246
Cdd:PRK08376 330 lgvglaalgdpamasYGEIALAGGIYhIVNHALYKALLFLTAG-----AVIYetgtrnLNELGGLARTMPKTTIAFLIGA 404
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 332712902 247 LSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTfTLITLYFYIRIYYS 297
Cdd:PRK08376 405 AAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIG-SVLTLASFVKVFHT 454
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
4-323 |
7.43e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 53.67 E-value: 7.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 4 NPSKLLFF-ITLMMGSFITISSNsWLGAWMGLEINLLSFIPLMMDTNNSMSTEASLKYFLTqALASALLLFSVLIYMIKN 82
Cdd:PRK06589 115 SSRFLFFFnLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFLPAVILIYT 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 83 NMNNFIDASFDWL-------TVIINTCLLLKSGAAPFHFWFPNVM-----------------EGLNWMNNLILLTFQKLA 138
Cdd:PRK06589 193 KTGNLDFVSGGLFsknqsiiLLLMFIYGIAKTAIFPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFGLSY 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 139 PLTLLSYSlntNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWI--FSAMLMSESLWIFYFIMYC------LLT 210
Cdd:PRK06589 273 LQRIFAEF---NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAllSAFILTPKALGAAILHLVShsfakiCLF 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 211 FIIVSNFNLFKLYYLNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFM----VTFTLI 286
Cdd:PRK06589 350 YSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVmlvvIASSIL 429
|
330 340 350
....*....|....*....|....*....|....*..
gi 332712902 287 TLYFYIRIYYSSALMNYNEMSWNFKILNLKNYYAVLI 323
Cdd:PRK06589 430 SALYLLKILSSIYKPSLSENSFITKSLPYLMQISVIT 466
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
8-294 |
3.31e-06 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 48.46 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 8 LLFFITLMMGSFITISSNSWLGAWMGLEINLLSFIPLMMDTNNSM-STEASLKYFLTQALASALLL--FSVL-------- 76
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVrSNEATMKYLLMGGASSSILVygFSWLyglsggei 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 77 -IYMIKNNM--NNFIDASFDWLTVI-INTCLLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPL--------TLLS 144
Cdd:CHL00049 194 eLQEIVNGLinTQMYNSPGISIALIfITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASalatrifdIPFY 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 145 YSLNTNYLMCIIVFCIT--IGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESlWIFYFIMYCLLTFIIVSNFNLFKL 222
Cdd:CHL00049 274 FSSNEWHLLLEILAILSmiLGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDS-NDGYASMITYMLFYIFMNLGTFAC 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 223 YYLNQLFSMINN----------SAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLiWLMVFMVTFT-LITLYFY 291
Cdd:CHL00049 353 IVLFGLRTGTDNirdyaglytkDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGL-YFLVSIGLLTsVISIYYY 431
|
...
gi 332712902 292 IRI 294
Cdd:CHL00049 432 LKI 434
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
103-313 |
7.51e-06 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 46.79 E-value: 7.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 103 LLLKSGAAPFHFWFPNVMEGLNWMNNLILLTFQKLAPLTLLsYSLNTNYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSI 182
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSST 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 183 NHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSNFnlfklyylnqlfsmiNNSAIVKFSIFTNLLSLGGLPPFLGFVPKW 262
Cdd:MTH00091 146 ESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKF---------------NNVNKLNFVSWETLLVFMNLPFSVTFFVKI 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 332712902 263 MVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYSSALMNYNEMSWNFKIL 313
Cdd:MTH00091 211 FSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFF 261
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
156-295 |
1.97e-05 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 46.10 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 156 IVFCIT--IGSIGGLNQTSLRKMMAYSSINHLGWIFSAM-LMSE---SLWIFY----FIMYCLLTFIIVSNFNLFKLYYL 225
Cdd:PRK12663 277 TMAAITmvIGALGALAYKDIRRIAGYQVISSIGFILLGLaLGTPagiNGAIFYlvhdMVVKTALFLIAGSLVRLTGYRSL 356
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 226 NQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIY 295
Cdd:PRK12663 357 QYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIF 426
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
150-295 |
5.22e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 41.88 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 150 NYLMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGW-IFSAMLMSE---SLWIFYFIMYclltfiIVSNFNLFKLY-- 223
Cdd:PRK12665 274 TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYmVFGIALSTVaglSGAIYYVAHH------ITVQTTLFLVVgl 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 224 --------YLNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNN--LIWLMVFMVTFT-LITLYFYI 292
Cdd:PRK12665 348 ierqagssSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGtwLAWALVAGGVVTsLLTLYAVA 427
|
...
gi 332712902 293 RIY 295
Cdd:PRK12665 428 RVW 430
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
97-188 |
2.94e-03 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 39.64 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 97 VIINTCLLLKSGAAPFHFWFPNVMEGLNWMNNL------------ILLTFQklaplTLLSYSLNTNYLMcIIVFCIT--I 162
Cdd:PRK12650 212 VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFlhaaavvkagiyLLLRFS-----PVFHDVAVWNWLL-IIVGMITalM 285
|
90 100
....*....|....*....|....*.
gi 332712902 163 GSIGGLNQTSLRKMMAYSSINHLGWI 188
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWI 311
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
152-297 |
5.19e-03 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 38.47 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 152 LMCIIVFCITIGSIGGLNQTSLRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCLLTFIIVSN--------FNLFKLY 223
Cdd:PRK06277 269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSAlflgagivSYRTKTS 348
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 332712902 224 YLNQLFSMINNSAIVKFSIFTNLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYYS 297
Cdd:PRK06277 349 NLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYL 422
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
44-296 |
9.45e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 37.67 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 44 LMMDTNNSMSTEASLKYFLTQALASALLLFSV-LIYM---------IKNNMNNFIDASFDWLTVI-INTCLLLKSGAAPF 112
Cdd:PRK08668 136 MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIfLIYAktgtfdfadISQGLINDTSTGFALIVFLfLLAFGVAKAGIFPL 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 113 HFWFPNVME------------GLNWMNNLILLTFQKLAPLTLLSYSLNT----NYLMCIIVF----CITIGSIGGLNQTS 172
Cdd:PRK08668 216 HVWAPDAYSeapqsfsavlsgQLSKLGAYGFLLVLYVLPGTKLFSEFGTyrgvPLFNYILAWlgniSIIVGTLMAILQED 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332712902 173 LRKMMAYSSINHLGWIFSAMLMSESLWIFYFIMYCL-------LTFIIVSNFNL-FKLYYLNQLFSMINNSAIVKFSIFT 244
Cdd:PRK08668 296 IKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnhalfkgLFFLIFAAVIYrTGTTKISEMGGLIEKMPFTFAMYLV 375
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 332712902 245 NLLSLGGLPPFLGFVPKWMVIQTLTKNNLIWLMVFMVTFTLITLYFYIRIYY 296
Cdd:PRK08668 376 AIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
|
|
| |
