|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-271 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 533.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQP 271
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
17-271 |
3.55e-96 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 287.84 E-value: 3.55e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 17 NSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIY 96
Cdd:COG1290 25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 97 LHIGRGIYYGSylYKE----TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVD 172
Cdd:COG1290 105 LHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 173 NATLTRFFAFH-FILPFLISGVSMIHLIFLHETGSNNPTG----LNSNIDKITFHPYFSYKDLLGFIllLSMLMLLALFL 247
Cdd:COG1290 183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFF--VFLGVFALLAF 260
|
250 260
....*....|....*....|....
gi 336126518 248 PNLLSDPENFTPANPLLTPPHIKP 271
Cdd:COG1290 261 FFPINPPPNYGPANPLATPAHIQP 284
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-207 |
1.66e-95 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 279.25 E-value: 1.66e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 10 PIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 90 FFFICIYLHIGRGIYYGSY--LYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 336126518 168 GFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-205 |
9.52e-88 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 258.85 E-value: 9.52e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 19 FIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 99 IGRGIYYG--SYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVDNATL 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 336126518 177 TRFFAFHFILPFLISGVSMIHLIFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-271 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 533.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQP 271
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-271 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 520.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKP 271
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
6-271 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 516.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 6 RKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHA 85
Cdd:MTH00131 5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 86 NGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWI 165
Cdd:MTH00131 85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 166 WGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLAL 245
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244
|
250 260
....*....|....*....|....*.
gi 336126518 246 FLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00131 245 FSPNLLGDPDNFTPANPLVTPPHIKP 270
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-271 |
1.47e-177 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 493.77 E-value: 1.47e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPItRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00100 1 MTNI-RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWII 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00100 80 RYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00100 240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKP 270
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
6-271 |
7.36e-176 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 489.04 E-value: 7.36e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 6 RKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHA 85
Cdd:MTH00191 2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 86 NGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWI 165
Cdd:MTH00191 82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 166 WGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLAL 245
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241
|
250 260
....*....|....*....|....*.
gi 336126518 246 FLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKP 267
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-271 |
1.86e-172 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 480.05 E-value: 1.86e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 12 MKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFF 91
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 92 FICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSV 171
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 172 DNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLALFLPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260
....*....|....*....|
gi 336126518 252 SDPENFTPANPLLTPPHIKP 271
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQP 260
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
6-271 |
9.86e-164 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 458.79 E-value: 9.86e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 6 RKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHA 85
Cdd:MTH00034 5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 86 NGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWI 165
Cdd:MTH00034 85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 166 WGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLAL 245
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244
|
250 260
....*....|....*....|....*.
gi 336126518 246 FLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQP 270
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-271 |
2.21e-163 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 457.83 E-value: 2.21e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00145 1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00145 81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQP 271
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-271 |
3.33e-157 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 442.19 E-value: 3.33e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00016 1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKP 271
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-271 |
2.97e-134 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 384.27 E-value: 2.97e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00224 1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00224 81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKP 271
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
6-271 |
2.18e-131 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 376.73 E-value: 2.18e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 6 RKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHA 85
Cdd:MTH00022 4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 86 NGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWI 165
Cdd:MTH00022 84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 166 WGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLAL 245
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243
|
250 260
....*....|....*....|....*.
gi 336126518 246 FLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQP 269
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-271 |
2.15e-130 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 374.43 E-value: 2.15e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 1 MLPITRKSHPIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLM 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 81 RNIHANGASFFFICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNN 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 161 LVQWIWGGFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSML 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
250 260 270
....*....|....*....|....*....|.
gi 336126518 241 MLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKP 271
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
17-271 |
2.57e-97 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 290.30 E-value: 2.57e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 17 NSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIY 96
Cdd:MTH00033 13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 97 LHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVDNATL 176
Cdd:MTH00033 93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 177 TRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLALF--LPNLLSDP 254
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIETLLQDP 252
|
250
....*....|....*..
gi 336126518 255 ENFTPANPLLTPPHIKP 271
Cdd:MTH00033 253 ENFIQANPLVTPVHIQP 269
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
17-271 |
3.55e-96 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 287.84 E-value: 3.55e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 17 NSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIY 96
Cdd:COG1290 25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 97 LHIGRGIYYGSylYKE----TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVD 172
Cdd:COG1290 105 LHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 173 NATLTRFFAFH-FILPFLISGVSMIHLIFLHETGSNNPTG----LNSNIDKITFHPYFSYKDLLGFIllLSMLMLLALFL 247
Cdd:COG1290 183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFF--VFLGVFALLAF 260
|
250 260
....*....|....*....|....
gi 336126518 248 PNLLSDPENFTPANPLLTPPHIKP 271
Cdd:COG1290 261 FFPINPPPNYGPANPLATPAHIQP 284
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-207 |
1.66e-95 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 279.25 E-value: 1.66e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 10 PIMKIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 90 FFFICIYLHIGRGIYYGSY--LYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 336126518 168 GFSVDNATLTRFFAFHFILPFLISGVSMIHLIFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
13-271 |
1.31e-91 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 274.89 E-value: 1.31e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 13 KIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFF 92
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 93 ICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVD 172
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 173 NATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFIlLLSMLMLLALFLPNLLS 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLG 239
|
250
....*....|....*....
gi 336126518 253 DPENFTPANPLLTPPHIKP 271
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVP 258
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-205 |
9.52e-88 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 258.85 E-value: 9.52e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 19 FIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 99 IGRGIYYG--SYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVDNATL 176
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 336126518 177 TRFFAFHFILPFLISGVSMIHLIFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
13-271 |
2.93e-70 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 220.24 E-value: 2.93e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 13 KIINNSFIDLPTPSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFF 92
Cdd:MTH00046 3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 93 ICIYLHIGRGIYYGSYLYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVD 172
Cdd:MTH00046 83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 173 NATLTRFFAFHFILPFLISGVSMIHLIFLHETGSNNPTGLNSNI-DKITFHPYFSYKDLLGFILLLSMLMLLALFLPNLL 251
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242
|
250 260
....*....|....*....|
gi 336126518 252 SDPENFTPANPLLTPPHIKP 271
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKP 262
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
89-234 |
6.18e-48 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 157.02 E-value: 6.18e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 89 SFFFICIYLHIGRGIYYGSYLYKE--TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIW 166
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 336126518 167 GGFSVDNATLTRFFAFHF-ILPFLISGVSMIHLIFLHETGSNNPTGLNSNIDKITFHPYFSYKDLLGFI 234
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFL 149
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
34-209 |
5.09e-37 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 130.60 E-value: 5.09e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 34 YGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGIYYGSYLYKE- 112
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 113 -TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVDNATLTRFFAFH-FILPFLI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170
....*....|....*....
gi 336126518 191 SGVSMIHLIFLHETGSNNP 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
25-209 |
2.86e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 115.20 E-value: 2.86e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 25 PSNLSSLWNYGSLLGICLIMQIITGLFLAMHFTADTSMAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGIY 104
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 336126518 105 YGSYLYKE--TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNNLVQWIWGGFSVDNATLTRFFAF 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*...
gi 336126518 183 H-FILPFLISGVSMIHLIFLHETGSNNP 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
208-271 |
2.47e-11 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 60.35 E-value: 2.47e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 336126518 208 NPTGLNSNIDKITFHPYFSYKDLLGFILLLSMLMLLALFLPNLLSDPENFTPANPLLTPPHIKP 271
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILP 64
|
|
| |
